Wall clock time and date at job start Tue Mar 31 2020 17:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46819 * 2 1 4 4 C 1.50694 * 109.47458 * 119.99452 * 2 1 3 5 5 H 1.08003 * 119.99911 * 114.77454 * 4 2 1 6 6 C 1.37882 * 120.00217 * 294.78146 * 4 2 1 7 7 N 1.31508 * 120.00002 * 155.71756 * 6 4 2 8 8 Si 1.86798 * 119.99704 * 335.98534 * 6 4 2 9 9 H 1.48497 * 109.47163 * 179.72544 * 8 6 4 10 10 H 1.48494 * 109.47395 * 299.73299 * 8 6 4 11 11 H 1.48509 * 109.46965 * 59.73082 * 8 6 4 12 12 N 1.46501 * 109.47665 * 239.99943 * 2 1 3 13 13 C 1.46496 * 119.99541 * 300.00042 * 12 2 1 14 14 S 1.65598 * 120.00294 * 119.99422 * 12 2 1 15 15 O 1.42100 * 106.40335 * 203.54606 * 14 12 2 16 16 O 1.42099 * 106.40262 * 336.46404 * 14 12 2 17 17 N 1.65593 * 107.21700 * 90.00230 * 14 12 2 18 18 C 1.46511 * 119.99908 * 65.00021 * 17 14 12 19 19 C 1.53004 * 109.46977 * 164.99975 * 18 17 14 20 20 N 1.46895 * 109.46717 * 180.02562 * 19 18 17 21 21 C 1.47843 * 111.00363 * 295.05865 * 20 19 18 22 22 C 1.54906 * 104.79599 * 213.63803 * 21 20 19 23 23 C 1.55135 * 101.65492 * 37.07290 * 22 21 20 24 24 C 1.47449 * 110.99638 * 174.21528 * 20 19 18 25 25 C 1.52997 * 109.88792 * 242.66406 * 24 20 19 26 26 C 1.52990 * 109.88921 * 3.85419 * 24 20 19 27 27 H 1.08997 * 109.46995 * 52.95269 * 1 2 3 28 28 H 1.09000 * 109.46770 * 172.95187 * 1 2 3 29 29 H 1.08996 * 109.47112 * 292.95117 * 1 2 3 30 30 H 0.96994 * 120.00499 * 355.17611 * 7 6 4 31 31 H 1.09008 * 109.47379 * 89.99634 * 13 12 2 32 32 H 1.09001 * 109.46947 * 209.99497 * 13 12 2 33 33 H 1.08998 * 109.47684 * 329.99814 * 13 12 2 34 34 H 0.96999 * 120.00373 * 244.99813 * 17 14 12 35 35 H 1.08999 * 109.47232 * 284.99886 * 18 17 14 36 36 H 1.08998 * 109.46892 * 45.00332 * 18 17 14 37 37 H 1.08999 * 109.47066 * 300.00012 * 19 18 17 38 38 H 1.08991 * 109.46955 * 60.00007 * 19 18 17 39 39 H 1.08998 * 110.37063 * 332.47089 * 21 20 19 40 40 H 1.08998 * 110.37204 * 94.80903 * 21 20 19 41 41 H 1.09000 * 110.99407 * 278.97211 * 22 21 20 42 42 H 1.09006 * 111.01724 * 155.17459 * 22 21 20 43 43 H 1.08998 * 110.70767 * 205.96451 * 23 22 21 44 44 H 1.09001 * 110.85982 * 82.79355 * 23 22 21 45 45 H 1.08996 * 109.47265 * 60.00183 * 25 24 20 46 46 H 1.09000 * 109.47172 * 180.02562 * 25 24 20 47 47 H 1.09000 * 109.47022 * 299.99926 * 25 24 20 48 48 H 1.09003 * 109.47606 * 55.90663 * 26 24 20 49 49 H 1.09007 * 109.47420 * 175.90728 * 26 24 20 50 50 H 1.09008 * 109.47280 * 295.90460 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.5820 -1.6349 1.1337 6 6 1.7904 -0.1797 2.4799 7 7 1.7789 -0.9632 3.5360 8 14 1.4714 1.6508 2.6714 9 1 1.2346 1.9649 4.1033 10 1 2.6502 2.4122 2.1860 11 1 0.2755 2.0306 1.8771 12 7 2.0185 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 16 2.9705 0.1142 -2.2862 15 8 2.8228 -0.5646 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5437 -0.1041 -1.8180 18 6 5.1358 -1.4440 -1.8414 19 6 6.6579 -1.3309 -1.7334 20 7 7.2515 -2.6744 -1.7575 21 6 6.8484 -3.4533 -0.5673 22 6 8.0728 -4.3459 -0.2454 23 6 9.2512 -3.3939 -0.5797 24 6 8.7237 -2.6008 -1.7940 25 6 9.2441 -3.2260 -3.0898 26 6 9.1745 -1.1420 -1.6985 27 1 -0.3633 0.6191 -0.8202 28 1 -0.3633 -1.0199 -0.1261 29 1 -0.3633 0.4007 0.9463 30 1 1.8709 -1.9228 3.4291 31 1 0.7377 -2.1444 -1.9992 32 1 2.4631 -2.5818 -1.9862 33 1 1.5296 -2.5969 -0.4707 34 1 5.0733 0.6552 -1.5282 35 1 4.7541 -2.0246 -1.0016 36 1 4.8738 -1.9407 -2.7756 37 1 7.0396 -0.7503 -2.5732 38 1 6.9199 -0.8342 -0.7993 39 1 6.6346 -2.7865 0.2680 40 1 5.9785 -4.0697 -0.7941 41 1 8.0910 -5.2290 -0.8839 42 1 8.0851 -4.6276 0.8076 43 1 10.1417 -3.9623 -0.8480 44 1 9.4594 -2.7257 0.2560 45 1 8.8359 -2.6852 -3.9436 46 1 10.3324 -3.1685 -3.1095 47 1 8.9349 -4.2700 -3.1393 48 1 8.7555 -0.6902 -0.7994 49 1 10.2628 -1.1002 -1.6528 50 1 8.8265 -0.5960 -2.5755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452080137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:26 Heat of formation + Delta-G solvation = -71.953183 kcal Electronic energy + Delta-G solvation = -28970.552029 eV Core-core repulsion = 25159.566695 eV Total energy + Delta-G solvation = -3810.985334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.07423 -36.81184 -36.35106 -35.54920 -35.35582 -32.63125 -32.59780 -32.08228 -29.79856 -27.74385 -26.99869 -25.69568 -25.34328 -24.68755 -22.76001 -21.06816 -20.66962 -19.21104 -18.53940 -17.57876 -17.18536 -16.90324 -16.29459 -15.83558 -15.65373 -15.17538 -14.74354 -14.30950 -13.90501 -13.77036 -13.68184 -13.39363 -13.26368 -13.05072 -12.95747 -12.52782 -12.33383 -12.10125 -11.99833 -11.91914 -11.85342 -11.75645 -11.64925 -11.58668 -11.50869 -11.32286 -11.20996 -11.12588 -10.96361 -10.79212 -10.75066 -10.69694 -10.46704 -10.08459 -9.82478 -9.32447 -9.18432 -8.44109 -8.43576 -8.06268 -6.55681 -4.17101 1.15242 3.31358 3.37127 3.43215 3.57766 3.79801 4.06950 4.36024 4.42676 4.49357 4.65920 4.85019 4.95533 5.04188 5.05927 5.08995 5.09950 5.21277 5.34878 5.45263 5.46890 5.47743 5.53013 5.61776 5.65809 5.73478 5.81236 5.82850 5.84213 5.90110 5.99647 6.03973 6.07344 6.13732 6.20106 6.21260 6.40456 6.48788 6.58121 6.67872 6.90428 6.94733 6.99241 7.20410 7.31864 7.52186 7.95643 8.28035 8.81216 9.47525 10.79228 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.003982 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.361383 B = 7030.163769 C = 8053.934687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.046 0.954 4 C -0.617 4.617 5 H 0.065 0.935 6 C 0.044 3.956 7 N -0.891 5.891 8 Si 1.023 2.977 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.985 5.985 13 C 0.106 3.894 14 S 2.785 3.215 15 O -0.994 6.994 16 O -0.985 6.985 17 N -1.127 6.127 18 C 0.125 3.875 19 C 0.044 3.956 20 N -0.518 5.518 21 C 0.037 3.963 22 C -0.129 4.129 23 C -0.133 4.133 24 C 0.094 3.906 25 C -0.126 4.126 26 C -0.166 4.166 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.270 0.730 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.501 -4.690 -9.210 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.655 4.655 5 H 0.083 0.917 6 C -0.163 4.163 7 N -0.524 5.524 8 Si 0.850 3.150 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.827 5.827 13 C -0.040 4.040 14 S 2.793 3.207 15 O -0.977 6.977 16 O -0.969 6.969 17 N -0.886 5.886 18 C -0.002 4.002 19 C -0.086 4.086 20 N -0.243 5.243 21 C -0.091 4.091 22 C -0.167 4.167 23 C -0.172 4.172 24 C 0.005 3.995 25 C -0.184 4.184 26 C -0.224 4.224 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.244 0.756 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.635 -3.433 -9.364 16.097 hybrid contribution 0.911 -0.712 0.210 1.175 sum 13.546 -4.145 -9.153 16.866 Atomic orbital electron populations 1.22380 0.98409 1.00429 1.00024 1.18938 0.91334 0.92734 0.82739 0.93641 1.22113 1.41056 1.11623 0.90740 0.91658 1.25580 0.93183 1.05530 0.92050 1.70859 1.43119 1.06169 1.32211 0.84346 0.77899 0.76336 0.76438 1.20826 1.20593 1.19904 1.57487 1.64647 1.21443 1.39092 1.21226 0.99123 0.81740 1.01935 1.01720 0.72576 0.73006 0.73359 1.93553 1.85966 1.76257 1.41940 1.93579 1.83766 1.32585 1.86969 1.55927 1.32228 1.15019 1.85443 1.21129 0.93434 0.83201 1.02468 1.22516 0.93842 0.90700 1.01514 1.63543 1.06728 1.14174 1.39875 1.23145 0.98369 0.96218 0.91340 1.22678 0.94226 0.98203 1.01569 1.22884 0.98592 0.98226 0.97480 1.21742 0.87242 0.94790 0.95764 1.21733 0.99297 1.01124 0.96218 1.22410 1.01552 0.96045 1.02420 0.95444 0.93176 0.92120 0.92009 0.93762 0.92978 0.90121 0.75607 0.91612 0.90113 0.89819 0.93541 0.92893 0.89854 0.90730 0.90819 0.90807 0.91369 0.92368 0.92804 0.92250 0.92110 0.92171 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.03 37.16 0.34 -3.00 16 2 C 0.25 5.72 2.22 -69.08 -0.15 5.57 16 3 H 0.05 1.11 5.50 -51.92 -0.29 0.82 16 4 C -0.62 -15.84 8.29 -34.44 -0.29 -16.13 16 5 H 0.07 1.76 7.39 -52.48 -0.39 1.37 16 6 C 0.04 1.20 5.17 -17.82 -0.09 1.10 16 7 N -0.89 -25.56 13.70 55.43 0.76 -24.80 16 8 Si 1.02 24.20 26.47 -169.99 -4.50 19.70 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.09 6.18 56.52 0.35 -5.74 16 12 N -0.98 -19.89 3.12 -115.85 -0.36 -20.25 16 13 C 0.11 1.87 9.14 59.84 0.55 2.42 16 14 S 2.79 53.39 6.09 -107.50 -0.66 52.74 16 15 O -0.99 -20.09 16.68 -57.17 -0.95 -21.04 16 16 O -0.98 -21.50 16.70 -57.17 -0.95 -22.45 16 17 N -1.13 -17.67 6.05 -10.61 -0.06 -17.73 16 18 C 0.12 1.76 6.23 -4.03 -0.03 1.74 16 19 C 0.04 0.52 3.81 -3.82 -0.01 0.51 16 20 N -0.52 -5.87 4.82 -215.76 -1.04 -6.91 16 21 C 0.04 0.41 5.57 -2.30 -0.01 0.40 16 22 C -0.13 -1.19 7.08 -24.60 -0.17 -1.37 16 23 C -0.13 -1.17 6.01 -24.91 -0.15 -1.32 16 24 C 0.09 0.90 1.15 -130.61 -0.15 0.75 16 25 C -0.13 -1.10 8.71 37.16 0.32 -0.77 16 26 C -0.17 -1.48 7.15 37.15 0.27 -1.21 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 29 H 0.06 1.36 5.51 -51.93 -0.29 1.07 16 30 H 0.27 7.67 8.73 -40.82 -0.36 7.32 16 31 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16 33 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 34 H 0.41 5.71 8.65 -34.47 -0.30 5.41 16 35 H 0.07 0.98 7.35 -51.93 -0.38 0.60 16 36 H 0.08 1.17 7.75 -51.93 -0.40 0.76 16 37 H 0.08 0.93 6.43 -51.93 -0.33 0.60 16 38 H 0.05 0.56 6.60 -51.93 -0.34 0.22 16 39 H 0.05 0.66 7.70 -51.93 -0.40 0.26 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 44 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.58 6.63 -51.93 -0.34 0.23 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.58 6.68 -51.92 -0.35 0.23 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -30.92 389.63 -10.27 -41.18 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.78 Total: 5.00 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 0.41 Total: -11.31 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -0.71 Total: -69.69 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.91 Total: -43.50 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -4.50 Total: 19.70 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.66 Total: 52.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.92 -10.27 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452080137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.770 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds