Wall clock time and date at job start Tue Mar 31 2020 17:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46819 * 2 1 4 4 C 1.50694 * 109.47458 * 119.99452 * 2 1 3 5 5 H 1.08003 * 119.99911 * 114.77454 * 4 2 1 6 6 C 1.37882 * 120.00217 * 294.78146 * 4 2 1 7 7 N 1.31508 * 120.00002 * 155.71756 * 6 4 2 8 8 Si 1.86798 * 119.99704 * 335.98534 * 6 4 2 9 9 H 1.48497 * 109.47163 * 179.72544 * 8 6 4 10 10 H 1.48494 * 109.47395 * 299.73299 * 8 6 4 11 11 H 1.48509 * 109.46965 * 59.73082 * 8 6 4 12 12 N 1.46501 * 109.47665 * 239.99943 * 2 1 3 13 13 C 1.46496 * 119.99541 * 300.00042 * 12 2 1 14 14 S 1.65598 * 120.00294 * 119.99422 * 12 2 1 15 15 O 1.42100 * 106.40335 * 203.54606 * 14 12 2 16 16 O 1.42099 * 106.40262 * 336.46404 * 14 12 2 17 17 N 1.65593 * 107.21700 * 90.00230 * 14 12 2 18 18 C 1.46511 * 119.99908 * 65.00021 * 17 14 12 19 19 C 1.53004 * 109.46977 * 164.99975 * 18 17 14 20 20 N 1.46895 * 109.46717 * 180.02562 * 19 18 17 21 21 C 1.47843 * 111.00363 * 295.05865 * 20 19 18 22 22 C 1.54906 * 104.79599 * 213.63803 * 21 20 19 23 23 C 1.55135 * 101.65492 * 37.07290 * 22 21 20 24 24 C 1.47449 * 110.99638 * 174.21528 * 20 19 18 25 25 C 1.52997 * 109.88792 * 242.66406 * 24 20 19 26 26 C 1.52990 * 109.88921 * 3.85419 * 24 20 19 27 27 H 1.08997 * 109.46995 * 52.95269 * 1 2 3 28 28 H 1.09000 * 109.46770 * 172.95187 * 1 2 3 29 29 H 1.08996 * 109.47112 * 292.95117 * 1 2 3 30 30 H 0.96994 * 120.00499 * 355.17611 * 7 6 4 31 31 H 1.09008 * 109.47379 * 89.99634 * 13 12 2 32 32 H 1.09001 * 109.46947 * 209.99497 * 13 12 2 33 33 H 1.08998 * 109.47684 * 329.99814 * 13 12 2 34 34 H 0.96999 * 120.00373 * 244.99813 * 17 14 12 35 35 H 1.08999 * 109.47232 * 284.99886 * 18 17 14 36 36 H 1.08998 * 109.46892 * 45.00332 * 18 17 14 37 37 H 1.08999 * 109.47066 * 300.00012 * 19 18 17 38 38 H 1.08991 * 109.46955 * 60.00007 * 19 18 17 39 39 H 1.08998 * 110.37063 * 332.47089 * 21 20 19 40 40 H 1.08998 * 110.37204 * 94.80903 * 21 20 19 41 41 H 1.09000 * 110.99407 * 278.97211 * 22 21 20 42 42 H 1.09006 * 111.01724 * 155.17459 * 22 21 20 43 43 H 1.08998 * 110.70767 * 205.96451 * 23 22 21 44 44 H 1.09001 * 110.85982 * 82.79355 * 23 22 21 45 45 H 1.08996 * 109.47265 * 60.00183 * 25 24 20 46 46 H 1.09000 * 109.47172 * 180.02562 * 25 24 20 47 47 H 1.09000 * 109.47022 * 299.99926 * 25 24 20 48 48 H 1.09003 * 109.47606 * 55.90663 * 26 24 20 49 49 H 1.09007 * 109.47420 * 175.90728 * 26 24 20 50 50 H 1.09008 * 109.47280 * 295.90460 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.5820 -1.6349 1.1337 6 6 1.7904 -0.1797 2.4799 7 7 1.7789 -0.9632 3.5360 8 14 1.4714 1.6508 2.6714 9 1 1.2346 1.9649 4.1033 10 1 2.6502 2.4122 2.1860 11 1 0.2755 2.0306 1.8771 12 7 2.0185 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 16 2.9705 0.1142 -2.2862 15 8 2.8228 -0.5646 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5437 -0.1041 -1.8180 18 6 5.1358 -1.4440 -1.8414 19 6 6.6579 -1.3309 -1.7334 20 7 7.2515 -2.6744 -1.7575 21 6 6.8484 -3.4533 -0.5673 22 6 8.0728 -4.3459 -0.2454 23 6 9.2512 -3.3939 -0.5797 24 6 8.7237 -2.6008 -1.7940 25 6 9.2441 -3.2260 -3.0898 26 6 9.1745 -1.1420 -1.6985 27 1 -0.3633 0.6191 -0.8202 28 1 -0.3633 -1.0199 -0.1261 29 1 -0.3633 0.4007 0.9463 30 1 1.8709 -1.9228 3.4291 31 1 0.7377 -2.1444 -1.9992 32 1 2.4631 -2.5818 -1.9862 33 1 1.5296 -2.5969 -0.4707 34 1 5.0733 0.6552 -1.5282 35 1 4.7541 -2.0246 -1.0016 36 1 4.8738 -1.9407 -2.7756 37 1 7.0396 -0.7503 -2.5732 38 1 6.9199 -0.8342 -0.7993 39 1 6.6346 -2.7865 0.2680 40 1 5.9785 -4.0697 -0.7941 41 1 8.0910 -5.2290 -0.8839 42 1 8.0851 -4.6276 0.8076 43 1 10.1417 -3.9623 -0.8480 44 1 9.4594 -2.7257 0.2560 45 1 8.8359 -2.6852 -3.9436 46 1 10.3324 -3.1685 -3.1095 47 1 8.9349 -4.2700 -3.1393 48 1 8.7555 -0.6902 -0.7994 49 1 10.2628 -1.1002 -1.6528 50 1 8.8265 -0.5960 -2.5755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452080137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:26 Heat of formation + Delta-G solvation = -95.117064 kcal Electronic energy + Delta-G solvation = -28971.556490 eV Core-core repulsion = 25159.566695 eV Total energy + Delta-G solvation = -3811.989795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89942 -38.43020 -38.05878 -36.98079 -36.73659 -34.61888 -33.38211 -33.03935 -31.57823 -28.52709 -27.97925 -27.25734 -26.63482 -26.13087 -23.75122 -22.48582 -21.91752 -20.53880 -19.61607 -19.49703 -18.74225 -18.44945 -17.49805 -16.87207 -16.68207 -16.36068 -16.02754 -15.60984 -15.41072 -15.23555 -14.97385 -14.61536 -14.52681 -14.23907 -13.95803 -13.84452 -13.63747 -13.52211 -13.48294 -13.29941 -13.23924 -13.16648 -13.01898 -13.01034 -12.61364 -12.46849 -12.37051 -12.27111 -12.08754 -12.05202 -11.89492 -11.86634 -11.66974 -11.52562 -11.43775 -11.23567 -10.55929 -10.37401 -9.84205 -9.32999 -8.67221 -6.29007 -0.37952 1.50014 1.52336 1.70389 1.88216 2.48194 2.51165 2.92143 3.02450 3.35546 3.60783 3.69476 3.85730 3.93098 4.01173 4.04867 4.25149 4.29254 4.42657 4.44471 4.46168 4.56248 4.61382 4.62648 4.70151 4.74255 4.77809 4.81625 4.85347 4.90166 4.91206 4.97801 4.99775 5.04634 5.06673 5.08730 5.18606 5.21665 5.29762 5.30163 5.50867 5.51878 5.71300 5.99084 6.01431 6.06751 6.12100 6.14255 6.68674 7.41076 8.65865 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.003982 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.361383 B = 7030.163769 C = 8053.934687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.039 0.961 4 C -0.604 4.604 5 H 0.043 0.957 6 C 0.003 3.997 7 N -0.923 5.923 8 Si 1.049 2.951 9 H -0.285 1.285 10 H -0.269 1.269 11 H -0.250 1.250 12 N -0.992 5.992 13 C 0.102 3.898 14 S 2.800 3.200 15 O -1.002 7.002 16 O -1.010 7.010 17 N -1.119 6.119 18 C 0.125 3.875 19 C 0.050 3.950 20 N -0.525 5.525 21 C 0.033 3.967 22 C -0.125 4.125 23 C -0.130 4.130 24 C 0.088 3.912 25 C -0.122 4.122 26 C -0.164 4.164 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.259 0.741 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.421 0.579 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.562 -4.360 -10.483 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.643 4.643 5 H 0.061 0.939 6 C -0.199 4.199 7 N -0.558 5.558 8 Si 0.871 3.129 9 H -0.211 1.211 10 H -0.194 1.194 11 H -0.174 1.174 12 N -0.833 5.833 13 C -0.043 4.043 14 S 2.808 3.192 15 O -0.986 6.986 16 O -0.994 6.994 17 N -0.881 5.881 18 C -0.002 4.002 19 C -0.079 4.079 20 N -0.250 5.250 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.168 4.168 24 C -0.001 4.001 25 C -0.180 4.180 26 C -0.222 4.222 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.697 -3.112 -10.660 17.633 hybrid contribution 0.647 -0.908 0.543 1.240 sum 14.343 -4.020 -10.117 18.007 Atomic orbital electron populations 1.22328 0.97192 1.01334 1.00394 1.18766 0.92283 0.92178 0.82667 0.94307 1.22203 1.39678 1.10562 0.91870 0.93850 1.26576 0.93053 1.08155 0.92164 1.70958 1.46009 1.05675 1.33120 0.84005 0.79222 0.72947 0.76694 1.21093 1.19429 1.17443 1.57458 1.65369 1.22336 1.38145 1.21357 1.00685 0.80533 1.01755 1.01164 0.72895 0.72116 0.73008 1.93540 1.86404 1.76299 1.42319 1.93540 1.84502 1.34111 1.87253 1.55649 1.31158 1.16130 1.85153 1.21201 0.95007 0.82068 1.01922 1.22435 0.92176 0.91417 1.01881 1.63560 1.08120 1.13586 1.39705 1.23137 0.99244 0.96260 0.90833 1.22667 0.93423 0.98161 1.02015 1.22883 0.98875 0.98039 0.97016 1.21895 0.86005 0.95557 0.96653 1.21709 1.00356 1.00631 0.95291 1.22384 1.02501 0.95404 1.01930 0.93560 0.92482 0.92868 0.93203 0.92229 0.91048 0.91424 0.74449 0.92742 0.90137 0.88697 0.93747 0.94683 0.90582 0.90038 0.90390 0.89100 0.91615 0.93015 0.91039 0.92585 0.93030 0.90685 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.42 9.03 71.98 0.65 -5.77 16 2 C 0.25 11.18 2.22 44.24 0.10 11.28 16 3 H 0.04 1.84 5.50 -2.38 -0.01 1.83 16 4 C -0.60 -31.16 8.29 25.60 0.21 -30.94 16 5 H 0.04 2.39 7.39 -2.91 -0.02 2.37 16 6 C 0.00 0.14 5.17 84.66 0.44 0.58 16 7 N -0.92 -53.84 13.70 21.45 0.29 -53.54 16 8 Si 1.05 47.97 26.47 68.60 1.82 49.79 16 9 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.25 -10.46 6.18 99.48 0.62 -9.84 16 12 N -0.99 -39.09 3.12 -520.44 -1.62 -40.71 16 13 C 0.10 3.51 9.14 127.77 1.17 4.68 16 14 S 2.80 103.98 6.09 -56.49 -0.34 103.64 16 15 O -1.00 -38.94 16.68 -128.00 -2.14 -41.08 16 16 O -1.01 -42.80 16.70 -128.00 -2.14 -44.94 16 17 N -1.12 -34.02 6.05 -187.47 -1.14 -35.15 16 18 C 0.12 3.45 6.23 86.38 0.54 3.99 16 19 C 0.05 1.16 3.81 86.31 0.33 1.49 16 20 N -0.52 -11.39 4.82 -836.53 -4.03 -15.42 16 21 C 0.03 0.74 5.57 86.77 0.48 1.22 16 22 C -0.12 -2.17 7.08 31.98 0.23 -1.95 16 23 C -0.13 -2.03 6.01 31.78 0.19 -1.84 16 24 C 0.09 1.53 1.15 3.87 0.00 1.53 16 25 C -0.12 -1.86 8.71 71.98 0.63 -1.23 16 26 C -0.16 -2.62 7.15 71.98 0.51 -2.10 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.27 7.44 -2.39 -0.02 2.25 16 29 H 0.05 2.29 5.51 -2.39 -0.01 2.28 16 30 H 0.26 15.17 8.73 -92.71 -0.81 14.36 16 31 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 33 H 0.07 2.49 6.92 -2.39 -0.02 2.47 16 34 H 0.42 11.23 8.65 -96.75 -0.84 10.39 16 35 H 0.05 1.64 7.35 -2.39 -0.02 1.62 16 36 H 0.08 2.25 7.75 -2.39 -0.02 2.23 16 37 H 0.09 1.97 6.43 -2.39 -0.02 1.95 16 38 H 0.04 1.04 6.60 -2.39 -0.02 1.03 16 39 H 0.03 0.90 7.70 -2.39 -0.02 0.88 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.09 1.13 7.83 -2.39 -0.02 1.11 16 44 H 0.07 1.07 7.85 -2.39 -0.02 1.05 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.05 0.92 6.63 -2.39 -0.02 0.90 16 49 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 50 H 0.06 1.03 6.68 -2.38 -0.02 1.01 16 Total: -1.00 -64.72 389.63 -3.87 -68.58 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.05 Total: 27.92 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 5.48 Total: -19.08 kcal Atomic # 7 Polarization: -138.33 SS G_CDS: -6.50 Total: -144.83 kcal Atomic # 8 Polarization: -81.74 SS G_CDS: -4.27 Total: -86.02 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.82 Total: 49.79 kcal Atomic # 16 Polarization: 103.98 SS G_CDS: -0.34 Total: 103.64 kcal Total: -64.72 -3.87 -68.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452080137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.532 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds