Wall clock time and date at job start Tue Mar 31 2020 17:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46971 * 2 1 4 4 C 1.46496 * 120.00086 * 85.00477 * 3 2 1 5 5 C 1.50702 * 109.46870 * 274.99951 * 4 3 2 6 6 H 1.07996 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99794 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99943 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47089 * 270.00257 * 9 7 5 11 11 H 1.48500 * 109.46833 * 29.99954 * 9 7 5 12 12 H 1.48495 * 109.46973 * 150.00085 * 9 7 5 13 13 S 1.65597 * 120.00190 * 264.99841 * 3 2 1 14 14 O 1.42106 * 106.40404 * 23.54422 * 13 3 2 15 15 O 1.42101 * 106.40289 * 156.46032 * 13 3 2 16 16 N 1.65594 * 107.22318 * 270.00031 * 13 3 2 17 17 C 1.46508 * 119.99637 * 89.99707 * 16 13 3 18 18 C 1.46495 * 120.00250 * 270.00304 * 16 13 3 19 19 H 1.08991 * 110.27547 * 359.29196 * 18 16 13 20 20 C 1.54599 * 110.30736 * 237.20362 * 18 16 13 21 21 C 1.55100 * 102.84655 * 219.18582 * 20 18 16 22 22 N 1.48527 * 103.28448 * 37.30670 * 21 20 18 23 23 C 1.46897 * 111.00204 * 200.33178 * 22 21 20 24 24 C 1.53000 * 109.47252 * 179.71902 * 23 22 21 25 25 C 1.53006 * 109.47293 * 299.72122 * 23 22 21 26 26 C 1.47901 * 105.82329 * 320.84822 * 22 21 20 27 27 H 1.08999 * 109.47058 * 59.99815 * 1 2 3 28 28 H 1.09000 * 109.46703 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46976 * 299.99625 * 1 2 3 30 30 H 1.09003 * 109.46976 * 240.00375 * 2 1 3 31 31 H 1.09001 * 109.47522 * 120.00423 * 2 1 3 32 32 H 1.08995 * 109.47419 * 154.99576 * 4 3 2 33 33 H 1.09004 * 109.47363 * 34.99267 * 4 3 2 34 34 H 0.96992 * 120.00152 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46969 * 90.00638 * 17 16 13 36 36 H 1.08997 * 109.46927 * 210.00238 * 17 16 13 37 37 H 1.08996 * 109.47533 * 330.00579 * 17 16 13 38 38 H 1.08997 * 110.72807 * 337.49096 * 20 18 16 39 39 H 1.09004 * 110.71816 * 100.76772 * 20 18 16 40 40 H 1.09007 * 110.59141 * 278.87431 * 21 20 18 41 41 H 1.09000 * 110.82868 * 155.85461 * 21 20 18 42 42 H 1.09001 * 109.47170 * 59.72030 * 23 22 21 43 43 H 1.08994 * 109.47179 * 60.00289 * 24 23 22 44 44 H 1.09007 * 109.46694 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47236 * 299.99841 * 24 23 22 46 46 H 1.08997 * 109.46782 * 65.67425 * 25 23 22 47 47 H 1.08997 * 109.47082 * 185.67227 * 25 23 22 48 48 H 1.09000 * 109.46511 * 305.67892 * 25 23 22 49 49 H 1.09002 * 109.91573 * 265.97967 * 26 22 21 50 50 H 1.08999 * 109.92028 * 144.68176 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 0.8360 2.7287 1.6356 6 1 -0.0225 2.5947 0.9944 7 6 0.7225 3.4671 2.7945 8 7 -0.4313 4.0087 3.1187 9 14 2.2073 3.6983 3.9041 10 1 2.2547 2.6004 4.9028 11 1 3.4456 3.6760 3.0848 12 1 2.1020 5.0023 4.6066 13 16 2.4122 2.1202 -1.4286 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1998 16 7 4.0143 1.8138 -1.7137 17 6 4.4089 0.6238 -2.4718 18 6 5.0372 2.7325 -1.2078 19 1 4.5702 3.5646 -0.6811 20 6 5.9105 3.2563 -2.3710 21 6 7.3328 3.2760 -1.7526 22 7 7.3499 2.0618 -0.8974 23 6 8.4009 2.1527 0.1249 24 6 8.3829 0.8899 0.9886 25 6 9.7647 2.2854 -0.5560 26 6 6.0102 1.9879 -0.2751 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.9080 2.8917 1.1513 33 1 2.4690 1.4182 2.0481 34 1 -0.5114 4.5279 3.9341 35 1 4.4545 0.8678 -3.5332 36 1 5.3888 0.2864 -2.1342 37 1 3.6771 -0.1679 -2.3122 38 1 5.8693 2.5755 -3.2213 39 1 5.6015 4.2597 -2.6638 40 1 7.4765 4.1730 -1.1502 41 1 8.0943 3.2100 -2.5297 42 1 8.2221 3.0252 0.7533 43 1 8.5617 0.0174 0.3603 44 1 9.1625 0.9576 1.7474 45 1 7.4114 0.7954 1.4738 46 1 9.8133 3.2344 -1.0899 47 1 10.5517 2.2515 0.1973 48 1 9.9003 1.4648 -1.2606 49 1 6.0281 2.4687 0.7030 50 1 5.7045 0.9465 -0.1744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452100787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:26 Heat of formation + Delta-G solvation = -63.387009 kcal Electronic energy + Delta-G solvation = -29581.154824 eV Core-core repulsion = 25770.540947 eV Total energy + Delta-G solvation = -3810.613877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.66961 -36.74367 -36.22097 -36.16791 -35.19748 -33.23638 -32.52030 -30.08898 -29.45079 -28.77052 -27.23454 -27.07593 -25.65739 -22.54220 -22.38668 -21.71979 -20.59242 -20.19885 -18.57654 -17.34858 -17.17198 -16.64615 -16.59623 -15.77171 -15.49090 -14.95363 -14.54803 -14.22611 -13.97665 -13.71943 -13.38030 -13.32721 -13.22478 -12.90131 -12.84028 -12.56210 -12.45917 -12.34272 -12.23327 -12.10182 -12.05713 -11.78004 -11.52389 -11.42828 -11.37497 -11.34726 -11.13265 -11.09384 -11.01651 -10.98492 -10.98312 -10.73559 -10.49470 -10.21095 -10.19798 -9.45376 -8.92333 -8.60043 -8.57229 -8.13792 -6.08735 -4.07210 1.08907 3.22892 3.29584 3.30011 3.38086 3.77726 4.00065 4.36407 4.52507 4.52940 4.71252 4.79462 4.91254 5.04578 5.08860 5.14893 5.19730 5.20502 5.32193 5.38091 5.44707 5.48823 5.57243 5.60908 5.61562 5.69608 5.71027 5.75306 5.80778 5.86736 5.89583 5.97751 5.98542 6.00695 6.09759 6.11220 6.26342 6.37644 6.60428 6.65714 6.74687 6.77582 6.92181 7.01290 7.13820 7.43014 7.57830 8.49031 8.97446 9.50482 11.04655 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.005002 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.794133 B = 5596.623879 C = 6941.574062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.136 3.864 3 N -0.988 5.988 4 C 0.229 3.771 5 C -0.528 4.528 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.266 1.266 12 H -0.284 1.284 13 S 2.777 3.223 14 O -0.987 6.987 15 O -0.961 6.961 16 N -1.006 6.006 17 C 0.096 3.904 18 C 0.138 3.862 19 H 0.108 0.892 20 C -0.132 4.132 21 C 0.036 3.964 22 N -0.510 5.510 23 C 0.065 3.935 24 C -0.145 4.145 25 C -0.143 4.143 26 C 0.024 3.976 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.657 -7.145 -7.793 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.829 5.829 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.191 1.191 12 H -0.209 1.209 13 S 2.786 3.214 14 O -0.971 6.971 15 O -0.945 6.945 16 N -0.844 5.844 17 C -0.049 4.049 18 C 0.031 3.969 19 H 0.126 0.874 20 C -0.172 4.172 21 C -0.092 4.092 22 N -0.235 5.235 23 C -0.043 4.043 24 C -0.203 4.203 25 C -0.200 4.200 26 C -0.105 4.105 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.103 -7.014 -8.501 21.194 hybrid contribution 0.733 0.735 1.560 1.873 sum 18.836 -6.279 -6.942 21.033 Atomic orbital electron populations 1.22264 0.95943 1.00903 1.04119 1.20993 0.95207 0.81826 1.01009 1.57636 1.78488 1.23133 1.23640 1.19407 0.98183 0.90967 0.80845 1.21426 0.95789 1.31676 1.07797 0.90024 1.24867 0.95593 0.94998 0.97471 1.69889 1.23987 1.34447 1.24985 0.86947 0.83940 0.78064 0.81301 1.20109 1.19091 1.20943 1.02199 0.72492 0.73669 0.73006 1.93544 1.69942 1.76341 1.57268 1.93617 1.85107 1.30207 1.85577 1.58265 1.25046 1.33553 1.67541 1.21359 1.01901 0.86145 0.95528 1.21730 0.89102 0.91584 0.94500 0.87424 1.22901 0.93688 1.02086 0.98501 1.23226 0.97518 0.91607 0.96836 1.64862 1.02591 1.36914 1.19178 1.21832 0.92274 0.97775 0.92458 1.21842 1.01927 0.97504 0.98985 1.21829 0.95366 1.02083 1.00764 1.23307 0.88612 1.02138 0.96483 0.92761 0.93067 0.89872 0.92078 0.91162 0.95310 0.95472 0.92571 0.92969 0.90445 0.91568 0.89781 0.90326 0.93565 0.89852 0.93992 0.91818 0.92392 0.92463 0.92823 0.92350 0.91745 0.92875 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.83 37.16 0.37 -2.77 16 2 C 0.14 2.29 6.09 -4.04 -0.02 2.27 16 3 N -0.99 -19.66 2.85 -115.67 -0.33 -19.99 16 4 C 0.23 5.25 4.19 -5.19 -0.02 5.23 16 5 C -0.53 -14.66 8.97 -34.44 -0.31 -14.96 16 6 H 0.08 2.49 7.13 -52.49 -0.37 2.11 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 9 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 S 2.78 54.54 5.96 -107.50 -0.64 53.90 16 14 O -0.99 -20.49 16.18 -57.17 -0.93 -21.41 16 15 O -0.96 -22.57 15.69 -57.17 -0.90 -23.47 16 16 N -1.01 -14.87 3.15 -113.16 -0.36 -15.22 16 17 C 0.10 1.13 8.94 59.85 0.53 1.67 16 18 C 0.14 1.91 3.38 -66.57 -0.23 1.68 16 19 H 0.11 1.71 6.96 -51.93 -0.36 1.35 16 20 C -0.13 -1.49 6.66 -24.78 -0.17 -1.65 16 21 C 0.04 0.36 5.46 -1.81 -0.01 0.35 16 22 N -0.51 -5.39 5.11 -222.39 -1.14 -6.53 16 23 C 0.07 0.62 2.36 -67.71 -0.16 0.46 16 24 C -0.14 -1.30 9.13 37.16 0.34 -0.96 16 25 C -0.14 -1.11 8.91 37.16 0.33 -0.78 16 26 C 0.02 0.29 4.61 -2.75 -0.01 0.28 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.74 6.59 -51.93 -0.34 1.39 16 30 H 0.06 0.88 7.26 -51.93 -0.38 0.51 16 31 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 32 H 0.03 0.67 6.67 -51.93 -0.35 0.32 16 33 H 0.03 0.59 7.43 -51.93 -0.39 0.20 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.05 0.57 7.88 -51.93 -0.41 0.16 16 36 H 0.08 0.79 6.87 -51.93 -0.36 0.44 16 37 H 0.07 0.75 7.44 -51.93 -0.39 0.36 16 38 H 0.08 0.91 6.91 -51.93 -0.36 0.55 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.45 8.00 -51.93 -0.42 0.04 16 41 H 0.08 0.71 7.78 -51.93 -0.40 0.31 16 42 H 0.04 0.43 7.99 -51.93 -0.42 0.01 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.56 7.20 -51.93 -0.37 0.19 16 46 H 0.05 0.40 7.24 -51.93 -0.38 0.03 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.68 7.60 -51.93 -0.39 0.29 16 50 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -33.11 392.41 -10.71 -43.82 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.98 Total: 0.49 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 0.55 Total: -7.21 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -1.05 Total: -68.14 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.82 Total: -44.88 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: 54.54 SS G_CDS: -0.64 Total: 53.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.11 -10.71 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452100787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.571 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds