Wall clock time and date at job start Tue Mar 31 2020 17:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46971 * 2 1 4 4 C 1.46496 * 120.00086 * 85.00477 * 3 2 1 5 5 C 1.50702 * 109.46870 * 274.99951 * 4 3 2 6 6 H 1.07996 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99794 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99943 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47089 * 270.00257 * 9 7 5 11 11 H 1.48500 * 109.46833 * 29.99954 * 9 7 5 12 12 H 1.48495 * 109.46973 * 150.00085 * 9 7 5 13 13 S 1.65597 * 120.00190 * 264.99841 * 3 2 1 14 14 O 1.42106 * 106.40404 * 23.54422 * 13 3 2 15 15 O 1.42101 * 106.40289 * 156.46032 * 13 3 2 16 16 N 1.65594 * 107.22318 * 270.00031 * 13 3 2 17 17 C 1.46508 * 119.99637 * 89.99707 * 16 13 3 18 18 C 1.46495 * 120.00250 * 270.00304 * 16 13 3 19 19 H 1.08991 * 110.27547 * 359.29196 * 18 16 13 20 20 C 1.54599 * 110.30736 * 237.20362 * 18 16 13 21 21 C 1.55100 * 102.84655 * 219.18582 * 20 18 16 22 22 N 1.48527 * 103.28448 * 37.30670 * 21 20 18 23 23 C 1.46897 * 111.00204 * 200.33178 * 22 21 20 24 24 C 1.53000 * 109.47252 * 179.71902 * 23 22 21 25 25 C 1.53006 * 109.47293 * 299.72122 * 23 22 21 26 26 C 1.47901 * 105.82329 * 320.84822 * 22 21 20 27 27 H 1.08999 * 109.47058 * 59.99815 * 1 2 3 28 28 H 1.09000 * 109.46703 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46976 * 299.99625 * 1 2 3 30 30 H 1.09003 * 109.46976 * 240.00375 * 2 1 3 31 31 H 1.09001 * 109.47522 * 120.00423 * 2 1 3 32 32 H 1.08995 * 109.47419 * 154.99576 * 4 3 2 33 33 H 1.09004 * 109.47363 * 34.99267 * 4 3 2 34 34 H 0.96992 * 120.00152 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46969 * 90.00638 * 17 16 13 36 36 H 1.08997 * 109.46927 * 210.00238 * 17 16 13 37 37 H 1.08996 * 109.47533 * 330.00579 * 17 16 13 38 38 H 1.08997 * 110.72807 * 337.49096 * 20 18 16 39 39 H 1.09004 * 110.71816 * 100.76772 * 20 18 16 40 40 H 1.09007 * 110.59141 * 278.87431 * 21 20 18 41 41 H 1.09000 * 110.82868 * 155.85461 * 21 20 18 42 42 H 1.09001 * 109.47170 * 59.72030 * 23 22 21 43 43 H 1.08994 * 109.47179 * 60.00289 * 24 23 22 44 44 H 1.09007 * 109.46694 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47236 * 299.99841 * 24 23 22 46 46 H 1.08997 * 109.46782 * 65.67425 * 25 23 22 47 47 H 1.08997 * 109.47082 * 185.67227 * 25 23 22 48 48 H 1.09000 * 109.46511 * 305.67892 * 25 23 22 49 49 H 1.09002 * 109.91573 * 265.97967 * 26 22 21 50 50 H 1.08999 * 109.92028 * 144.68176 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 0.8360 2.7287 1.6356 6 1 -0.0225 2.5947 0.9944 7 6 0.7225 3.4671 2.7945 8 7 -0.4313 4.0087 3.1187 9 14 2.2073 3.6983 3.9041 10 1 2.2547 2.6004 4.9028 11 1 3.4456 3.6760 3.0848 12 1 2.1020 5.0023 4.6066 13 16 2.4122 2.1202 -1.4286 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1998 16 7 4.0143 1.8138 -1.7137 17 6 4.4089 0.6238 -2.4718 18 6 5.0372 2.7325 -1.2078 19 1 4.5702 3.5646 -0.6811 20 6 5.9105 3.2563 -2.3710 21 6 7.3328 3.2760 -1.7526 22 7 7.3499 2.0618 -0.8974 23 6 8.4009 2.1527 0.1249 24 6 8.3829 0.8899 0.9886 25 6 9.7647 2.2854 -0.5560 26 6 6.0102 1.9879 -0.2751 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.9080 2.8917 1.1513 33 1 2.4690 1.4182 2.0481 34 1 -0.5114 4.5279 3.9341 35 1 4.4545 0.8678 -3.5332 36 1 5.3888 0.2864 -2.1342 37 1 3.6771 -0.1679 -2.3122 38 1 5.8693 2.5755 -3.2213 39 1 5.6015 4.2597 -2.6638 40 1 7.4765 4.1730 -1.1502 41 1 8.0943 3.2100 -2.5297 42 1 8.2221 3.0252 0.7533 43 1 8.5617 0.0174 0.3603 44 1 9.1625 0.9576 1.7474 45 1 7.4114 0.7954 1.4738 46 1 9.8133 3.2344 -1.0899 47 1 10.5517 2.2515 0.1973 48 1 9.9003 1.4648 -1.2606 49 1 6.0281 2.4687 0.7030 50 1 5.7045 0.9465 -0.1744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452100787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:26 Heat of formation + Delta-G solvation = -88.395694 kcal Electronic energy + Delta-G solvation = -29582.239282 eV Core-core repulsion = 25770.540947 eV Total energy + Delta-G solvation = -3811.698335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.56425 -38.38975 -37.79035 -37.18874 -36.86040 -34.61018 -34.11115 -31.74854 -30.26629 -29.67608 -29.10727 -27.81063 -26.64820 -24.33672 -23.42955 -23.12774 -21.62686 -21.01596 -19.89266 -19.10095 -18.78811 -18.34749 -17.66249 -17.08056 -16.50070 -16.36830 -15.84886 -15.39312 -15.21508 -15.01794 -14.74413 -14.56229 -14.49384 -14.19474 -14.08765 -13.94380 -13.75027 -13.51755 -13.24393 -13.19249 -13.08981 -13.05739 -12.90099 -12.87736 -12.81490 -12.71509 -12.63105 -12.31661 -12.16001 -12.11796 -11.97171 -11.86349 -11.75518 -11.70936 -11.62451 -11.47974 -10.75682 -10.07368 -9.78838 -9.39719 -8.26521 -6.30654 -0.43259 1.33708 1.37936 1.46428 1.97467 2.34980 2.51708 2.97480 3.06505 3.30701 3.54528 3.63070 3.86754 3.99237 4.07728 4.14691 4.16856 4.30663 4.38406 4.42549 4.46511 4.47913 4.61154 4.66689 4.72016 4.76378 4.83283 4.85224 4.86448 4.93181 4.97523 4.98457 5.02383 5.03304 5.04728 5.05915 5.13831 5.23057 5.35838 5.39157 5.42245 5.49843 5.52795 5.60718 5.87947 5.90612 6.13856 6.34214 6.73073 7.31233 8.90793 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.005002 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.794133 B = 5596.623879 C = 6941.574062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 N -0.994 5.994 4 C 0.238 3.762 5 C -0.533 4.533 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.938 3.062 10 H -0.255 1.255 11 H -0.242 1.242 12 H -0.287 1.287 13 S 2.785 3.215 14 O -1.003 7.003 15 O -1.010 7.010 16 N -0.994 5.994 17 C 0.090 3.910 18 C 0.129 3.871 19 H 0.080 0.920 20 C -0.129 4.129 21 C 0.041 3.959 22 N -0.507 5.507 23 C 0.061 3.939 24 C -0.142 4.142 25 C -0.137 4.137 26 C 0.031 3.969 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.266 0.734 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.505 -9.020 -7.921 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 N -0.834 5.834 4 C 0.113 3.887 5 C -0.572 4.572 6 H 0.053 0.947 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.761 3.239 10 H -0.179 1.179 11 H -0.165 1.165 12 H -0.213 1.213 13 S 2.796 3.204 14 O -0.987 6.987 15 O -0.993 6.993 16 N -0.834 5.834 17 C -0.055 4.055 18 C 0.022 3.978 19 H 0.098 0.902 20 C -0.169 4.169 21 C -0.087 4.087 22 N -0.233 5.233 23 C -0.048 4.048 24 C -0.200 4.200 25 C -0.195 4.195 26 C -0.099 4.099 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.063 0.937 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.952 -8.922 -8.655 25.227 hybrid contribution -0.521 1.285 1.486 2.032 sum 21.431 -7.637 -7.169 23.854 Atomic orbital electron populations 1.22229 0.97457 1.02315 1.01052 1.21314 0.94013 0.80681 1.03795 1.57584 1.79250 1.24114 1.22448 1.19173 0.95200 0.91568 0.82740 1.21732 0.96704 1.31777 1.07037 0.94716 1.25871 0.99021 0.94627 0.99437 1.70070 1.26883 1.36040 1.25986 0.85857 0.80336 0.78341 0.79396 1.17899 1.16498 1.21260 1.01656 0.73520 0.72507 0.72739 1.93510 1.71281 1.76269 1.57647 1.93549 1.86335 1.33323 1.86130 1.57835 1.23142 1.34841 1.67620 1.21643 1.03160 0.84888 0.95775 1.21866 0.89049 0.90986 0.95900 0.90166 1.22909 0.94007 1.02085 0.97888 1.23253 0.96920 0.91427 0.97115 1.64923 1.01881 1.37146 1.19307 1.21933 0.92742 0.97724 0.92362 1.21822 1.01734 0.97266 0.99144 1.21786 0.94468 1.02261 1.00963 1.23200 0.89170 1.01889 0.95644 0.95079 0.89405 0.93619 0.88950 0.88562 0.95272 0.92931 0.92539 0.91906 0.88233 0.90879 0.88833 0.90511 0.93605 0.87881 0.94843 0.91589 0.91260 0.93541 0.92503 0.91292 0.91666 0.93719 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.25 9.83 71.98 0.71 -5.55 16 2 C 0.13 4.08 6.09 86.38 0.53 4.60 16 3 N -0.99 -39.12 2.85 -519.85 -1.48 -40.61 16 4 C 0.24 10.78 4.19 85.63 0.36 11.14 16 5 C -0.53 -30.63 8.97 25.60 0.23 -30.40 16 6 H 0.03 2.26 7.13 -2.91 -0.02 2.24 16 7 C 0.01 0.46 5.47 84.66 0.46 0.92 16 8 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 9 Si 0.94 42.63 27.47 68.60 1.88 44.51 16 10 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 S 2.79 109.63 5.96 -56.49 -0.34 109.29 16 14 O -1.00 -41.52 16.18 -128.00 -2.07 -43.59 16 15 O -1.01 -49.06 15.69 -128.00 -2.01 -51.07 16 16 N -0.99 -27.86 3.15 -511.92 -1.61 -29.47 16 17 C 0.09 1.84 8.94 127.77 1.14 2.98 16 18 C 0.13 3.40 3.38 45.87 0.16 3.56 16 19 H 0.08 2.57 6.96 -2.39 -0.02 2.55 16 20 C -0.13 -2.67 6.66 31.86 0.21 -2.46 16 21 C 0.04 0.69 5.46 86.71 0.47 1.17 16 22 N -0.51 -9.27 5.11 -857.51 -4.38 -13.65 16 23 C 0.06 0.99 2.36 44.92 0.11 1.09 16 24 C -0.14 -2.15 9.13 71.98 0.66 -1.49 16 25 C -0.14 -1.70 8.91 71.98 0.64 -1.06 16 26 C 0.03 0.68 4.61 86.45 0.40 1.08 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.04 1.99 6.59 -2.39 -0.02 1.97 16 30 H 0.09 2.41 7.26 -2.39 -0.02 2.39 16 31 H 0.10 2.61 8.00 -2.39 -0.02 2.60 16 32 H 0.03 1.33 6.67 -2.39 -0.02 1.32 16 33 H 0.05 2.14 7.43 -2.38 -0.02 2.12 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.06 1.19 7.88 -2.39 -0.02 1.17 16 36 H 0.10 1.65 6.87 -2.39 -0.02 1.63 16 37 H 0.07 1.42 7.44 -2.39 -0.02 1.41 16 38 H 0.09 1.76 6.91 -2.39 -0.02 1.74 16 39 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.05 0.80 8.00 -2.38 -0.02 0.78 16 41 H 0.10 1.39 7.78 -2.39 -0.02 1.38 16 42 H 0.03 0.61 7.99 -2.39 -0.02 0.59 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.05 0.80 7.20 -2.39 -0.02 0.78 16 46 H 0.06 0.67 7.24 -2.39 -0.02 0.65 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.04 1.07 7.60 -2.39 -0.02 1.05 16 50 H 0.10 2.03 7.01 -2.39 -0.02 2.02 16 Total: -1.00 -75.79 392.41 -2.80 -78.59 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.84 Total: 20.19 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 6.07 Total: -14.40 kcal Atomic # 7 Polarization: -136.34 SS G_CDS: -7.18 Total: -143.52 kcal Atomic # 8 Polarization: -90.58 SS G_CDS: -4.08 Total: -94.66 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal Atomic # 16 Polarization: 109.63 SS G_CDS: -0.34 Total: 109.29 kcal Total: -75.79 -2.80 -78.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452100787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.810 kcal (2) G-P(sol) polarization free energy of solvation -75.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds