Wall clock time and date at job start Tue Mar 31 2020 17:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46852 * 2 1 4 4 C 1.46499 * 119.99593 * 274.99619 * 3 2 1 5 5 C 1.50703 * 109.47149 * 274.99987 * 4 3 2 6 6 H 1.07999 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99956 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99597 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99942 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46845 * 90.00122 * 9 7 5 11 11 H 1.48499 * 109.47135 * 209.99745 * 9 7 5 12 12 H 1.48494 * 109.47526 * 330.00095 * 9 7 5 13 13 S 1.65598 * 120.00335 * 94.99773 * 3 2 1 14 14 O 1.42095 * 106.40077 * 336.45762 * 13 3 2 15 15 O 1.42100 * 106.40255 * 203.53907 * 13 3 2 16 16 N 1.65601 * 107.21757 * 89.99631 * 13 3 2 17 17 C 1.46495 * 120.00274 * 270.00323 * 16 13 3 18 18 C 1.46507 * 119.99601 * 89.99972 * 16 13 3 19 19 H 1.08989 * 110.27532 * 2.09097 * 18 16 13 20 20 C 1.54597 * 110.38875 * 124.23830 * 18 16 13 21 21 C 1.54939 * 102.92371 * 140.91711 * 20 18 16 22 22 N 1.48534 * 103.22234 * 322.57898 * 21 20 18 23 23 C 1.46900 * 110.99828 * 159.71804 * 22 21 20 24 24 C 1.53004 * 109.47380 * 178.83510 * 23 22 21 25 25 C 1.53002 * 109.46860 * 58.83752 * 23 22 21 26 26 C 1.47911 * 105.81979 * 39.20974 * 22 21 20 27 27 H 1.08996 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47033 * 300.00185 * 1 2 3 29 29 H 1.09001 * 109.46935 * 60.00624 * 1 2 3 30 30 H 1.08994 * 109.46911 * 239.99339 * 2 1 3 31 31 H 1.09001 * 109.46935 * 119.99376 * 2 1 3 32 32 H 1.08997 * 109.47684 * 35.00387 * 4 3 2 33 33 H 1.09007 * 109.47333 * 155.00399 * 4 3 2 34 34 H 0.97003 * 119.99683 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46847 * 269.99922 * 17 16 13 36 36 H 1.08998 * 109.47346 * 29.99683 * 17 16 13 37 37 H 1.08999 * 109.47285 * 150.00367 * 17 16 13 38 38 H 1.09006 * 110.71973 * 259.27192 * 20 18 16 39 39 H 1.08999 * 110.72959 * 22.37447 * 20 18 16 40 40 H 1.08999 * 110.66616 * 204.14953 * 21 20 18 41 41 H 1.08995 * 110.66945 * 81.01182 * 21 20 18 42 42 H 1.08997 * 109.47610 * 298.83843 * 23 22 21 43 43 H 1.08997 * 109.47021 * 300.00693 * 24 23 22 44 44 H 1.08998 * 109.46732 * 60.00524 * 24 23 22 45 45 H 1.08996 * 109.47307 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.46921 * 174.28334 * 25 23 22 47 47 H 1.08999 * 109.47355 * 294.28653 * 25 23 22 48 48 H 1.09003 * 109.46841 * 54.28794 * 25 23 22 49 49 H 1.08999 * 109.91254 * 94.01886 * 26 22 21 50 50 H 1.09000 * 109.91494 * 215.11487 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1721 1.1111 -1.3839 7 6 3.8526 2.3604 -3.0849 8 7 5.0188 2.0809 -3.6247 9 14 2.6808 3.5320 -3.9474 10 1 2.9453 4.9206 -3.4923 11 1 2.8853 3.4448 -5.4156 12 1 1.2805 3.1619 -3.6198 13 16 2.4121 2.1203 1.4286 14 8 1.6868 1.4417 2.4447 15 8 2.3056 3.5187 1.1997 16 7 4.0143 1.8138 1.7138 17 6 4.4089 0.6240 2.4718 18 6 5.0372 2.7326 1.2078 19 1 4.5693 3.5773 0.7022 20 6 5.9345 3.2295 2.3645 21 6 7.3452 3.2510 1.7241 22 7 7.3397 2.0503 0.8497 23 6 8.3748 2.1499 -0.1879 24 6 8.3576 0.8850 -1.0486 25 6 9.7467 2.2983 0.4731 26 6 5.9896 1.9959 0.2479 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.3618 1.8097 -1.9454 33 1 2.0922 3.1803 -1.0758 34 1 5.2706 2.4833 -4.4706 35 1 4.4545 0.8680 3.5332 36 1 3.6771 -0.1678 2.3122 37 1 5.3889 0.2865 2.1342 38 1 5.6387 4.2302 2.6796 39 1 5.8999 2.5361 3.2048 40 1 8.1165 3.1659 2.4895 41 1 7.4859 4.1562 1.1335 42 1 8.1779 3.0191 -0.8154 43 1 8.5545 0.0158 -0.4211 44 1 7.3803 0.7794 -1.5195 45 1 9.1260 0.9588 -1.8182 46 1 10.5232 2.2702 -0.2914 47 1 9.7934 3.2493 1.0037 48 1 9.9008 1.4810 1.1777 49 1 5.9955 2.4920 -0.7226 50 1 5.6760 0.9584 0.1326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452100789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:30 Heat of formation + Delta-G solvation = -66.864338 kcal Electronic energy + Delta-G solvation = -30251.045326 eV Core-core repulsion = 26440.280661 eV Total energy + Delta-G solvation = -3810.764665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.17554 -36.78243 -36.16346 -35.81337 -35.27652 -32.83257 -32.67358 -30.24340 -28.95822 -28.31447 -27.13453 -26.59737 -25.31200 -22.93480 -21.98270 -21.46524 -20.18147 -19.64610 -18.31247 -17.33963 -17.01622 -16.79231 -16.21376 -15.60285 -15.13525 -14.72632 -14.21274 -14.10802 -13.81381 -13.72295 -13.34352 -13.01173 -12.84730 -12.67628 -12.52899 -12.41463 -12.24343 -12.02182 -11.95282 -11.87342 -11.83570 -11.64045 -11.50651 -11.40594 -11.24566 -11.14991 -11.00807 -10.90213 -10.83106 -10.59239 -10.50000 -10.44476 -10.39448 -10.27565 -10.16146 -9.55080 -8.70098 -8.58643 -8.10070 -7.99929 -6.18739 -4.17736 1.19959 3.23080 3.29851 3.34602 3.41362 4.04527 4.31132 4.34085 4.85470 4.90994 5.02491 5.14017 5.22868 5.28789 5.37555 5.41805 5.46195 5.64589 5.67334 5.72159 5.74629 5.78229 5.81699 5.91913 5.95293 6.00915 6.04180 6.07726 6.17558 6.18327 6.20472 6.21901 6.24114 6.30970 6.49626 6.52581 6.58288 6.68550 6.75464 6.79123 6.84654 7.02760 7.13975 7.30914 7.42280 7.49987 7.54658 8.39269 8.85996 9.43088 10.92258 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.006583 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.132949 B = 4252.204073 C = 6009.199901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.130 3.870 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.539 4.539 6 H 0.088 0.912 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.863 3.137 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.784 3.216 14 O -0.994 6.994 15 O -0.983 6.983 16 N -0.996 5.996 17 C 0.099 3.901 18 C 0.149 3.851 19 H 0.105 0.895 20 C -0.134 4.134 21 C 0.037 3.963 22 N -0.515 5.515 23 C 0.070 3.930 24 C -0.142 4.142 25 C -0.142 4.142 26 C 0.036 3.964 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -2.128 8.729 9.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.578 4.578 6 H 0.106 0.894 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.690 3.310 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.190 1.190 13 S 2.794 3.206 14 O -0.978 6.978 15 O -0.967 6.967 16 N -0.834 5.834 17 C -0.047 4.047 18 C 0.041 3.959 19 H 0.123 0.877 20 C -0.174 4.174 21 C -0.091 4.091 22 N -0.240 5.240 23 C -0.038 4.038 24 C -0.200 4.200 25 C -0.199 4.199 26 C -0.093 4.093 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.314 -2.076 9.398 10.179 hybrid contribution -0.385 1.131 -1.501 1.919 sum 2.929 -0.944 7.896 8.474 Atomic orbital electron populations 1.22218 0.96984 1.01550 1.02222 1.21011 0.93503 0.82637 1.02480 1.57583 1.78745 1.22978 1.23423 1.19583 0.98384 0.91979 0.81124 1.21528 1.00927 1.29084 1.06282 0.89395 1.24785 0.94867 0.95938 0.96788 1.69865 1.20306 1.43696 1.18817 0.87052 0.82447 0.82337 0.79178 1.19956 1.21194 1.18962 1.01799 0.72687 0.73288 0.72823 1.93538 1.70642 1.76350 1.57302 1.93544 1.85992 1.31090 1.86068 1.57851 1.24651 1.33544 1.67310 1.21320 1.02188 0.86169 0.95013 1.21666 0.88923 0.91592 0.93673 0.87680 1.22883 0.94418 1.01480 0.98619 1.23137 0.97023 0.92401 0.96561 1.64898 1.03761 1.36753 1.18615 1.21746 0.91626 0.98250 0.92204 1.21794 1.03206 0.96542 0.98460 1.21847 0.96027 1.01468 1.00603 1.23287 0.86463 1.02341 0.97189 0.92149 0.92628 0.92312 0.89933 0.91710 0.94707 0.94250 0.92653 0.93326 0.91955 0.90206 0.91072 0.90198 0.90478 0.93897 0.93962 0.92791 0.90785 0.93025 0.92658 0.93252 0.92114 0.90449 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.16 6.06 -4.04 -0.02 2.14 16 3 N -0.99 -19.33 2.82 -115.66 -0.33 -19.66 16 4 C 0.21 4.76 4.50 -5.19 -0.02 4.74 16 5 C -0.54 -13.19 9.47 -34.44 -0.33 -13.52 16 6 H 0.09 2.23 6.39 -52.49 -0.34 1.90 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -23.91 13.96 55.43 0.77 -23.14 16 9 Si 0.86 20.11 27.47 -169.99 -4.67 15.44 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 13 S 2.78 54.40 6.02 -107.50 -0.65 53.75 16 14 O -0.99 -19.90 16.18 -57.17 -0.93 -20.82 16 15 O -0.98 -21.91 15.26 -57.17 -0.87 -22.79 16 16 N -1.00 -16.89 3.14 -113.16 -0.36 -17.25 16 17 C 0.10 1.39 8.89 59.84 0.53 1.93 16 18 C 0.15 2.56 3.39 -66.57 -0.23 2.33 16 19 H 0.11 2.04 6.94 -51.94 -0.36 1.68 16 20 C -0.13 -1.89 6.65 -24.87 -0.17 -2.06 16 21 C 0.04 0.50 5.39 -1.90 -0.01 0.49 16 22 N -0.51 -7.82 5.11 -222.49 -1.14 -8.96 16 23 C 0.07 1.05 2.37 -67.71 -0.16 0.89 16 24 C -0.14 -2.20 9.16 37.16 0.34 -1.86 16 25 C -0.14 -1.70 8.87 37.16 0.33 -1.37 16 26 C 0.04 0.64 3.45 -2.75 -0.01 0.63 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.38 8.11 -51.93 -0.42 0.95 16 31 H 0.06 0.97 7.26 -51.93 -0.38 0.60 16 32 H 0.03 0.77 7.17 -51.93 -0.37 0.40 16 33 H 0.04 0.93 6.34 -51.92 -0.33 0.60 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.05 0.62 7.88 -51.93 -0.41 0.21 16 36 H 0.06 0.83 7.44 -51.93 -0.39 0.45 16 37 H 0.08 1.08 6.97 -51.93 -0.36 0.72 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.06 6.85 -51.93 -0.36 0.70 16 40 H 0.08 0.91 7.78 -51.93 -0.40 0.51 16 41 H 0.04 0.59 8.01 -51.93 -0.42 0.17 16 42 H 0.04 0.70 7.98 -51.93 -0.41 0.29 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.39 7.28 -51.93 -0.38 1.01 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.65 7.43 -51.93 -0.39 1.26 16 50 H 0.09 1.68 6.49 -51.93 -0.34 1.34 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -28.28 391.64 -10.69 -38.97 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.97 Total: 4.43 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 0.54 Total: -5.89 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.05 Total: -69.00 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.80 Total: -43.61 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Atomic # 16 Polarization: 54.40 SS G_CDS: -0.65 Total: 53.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.28 -10.69 -38.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452100789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.894 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds