Wall clock time and date at job start Tue Mar 31 2020 17:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46852 * 2 1 4 4 C 1.46499 * 119.99593 * 274.99619 * 3 2 1 5 5 C 1.50703 * 109.47149 * 274.99987 * 4 3 2 6 6 H 1.07999 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99956 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99597 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99942 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46845 * 90.00122 * 9 7 5 11 11 H 1.48499 * 109.47135 * 209.99745 * 9 7 5 12 12 H 1.48494 * 109.47526 * 330.00095 * 9 7 5 13 13 S 1.65598 * 120.00335 * 94.99773 * 3 2 1 14 14 O 1.42095 * 106.40077 * 336.45762 * 13 3 2 15 15 O 1.42100 * 106.40255 * 203.53907 * 13 3 2 16 16 N 1.65601 * 107.21757 * 89.99631 * 13 3 2 17 17 C 1.46495 * 120.00274 * 270.00323 * 16 13 3 18 18 C 1.46507 * 119.99601 * 89.99972 * 16 13 3 19 19 H 1.08989 * 110.27532 * 2.09097 * 18 16 13 20 20 C 1.54597 * 110.38875 * 124.23830 * 18 16 13 21 21 C 1.54939 * 102.92371 * 140.91711 * 20 18 16 22 22 N 1.48534 * 103.22234 * 322.57898 * 21 20 18 23 23 C 1.46900 * 110.99828 * 159.71804 * 22 21 20 24 24 C 1.53004 * 109.47380 * 178.83510 * 23 22 21 25 25 C 1.53002 * 109.46860 * 58.83752 * 23 22 21 26 26 C 1.47911 * 105.81979 * 39.20974 * 22 21 20 27 27 H 1.08996 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47033 * 300.00185 * 1 2 3 29 29 H 1.09001 * 109.46935 * 60.00624 * 1 2 3 30 30 H 1.08994 * 109.46911 * 239.99339 * 2 1 3 31 31 H 1.09001 * 109.46935 * 119.99376 * 2 1 3 32 32 H 1.08997 * 109.47684 * 35.00387 * 4 3 2 33 33 H 1.09007 * 109.47333 * 155.00399 * 4 3 2 34 34 H 0.97003 * 119.99683 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46847 * 269.99922 * 17 16 13 36 36 H 1.08998 * 109.47346 * 29.99683 * 17 16 13 37 37 H 1.08999 * 109.47285 * 150.00367 * 17 16 13 38 38 H 1.09006 * 110.71973 * 259.27192 * 20 18 16 39 39 H 1.08999 * 110.72959 * 22.37447 * 20 18 16 40 40 H 1.08999 * 110.66616 * 204.14953 * 21 20 18 41 41 H 1.08995 * 110.66945 * 81.01182 * 21 20 18 42 42 H 1.08997 * 109.47610 * 298.83843 * 23 22 21 43 43 H 1.08997 * 109.47021 * 300.00693 * 24 23 22 44 44 H 1.08998 * 109.46732 * 60.00524 * 24 23 22 45 45 H 1.08996 * 109.47307 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.46921 * 174.28334 * 25 23 22 47 47 H 1.08999 * 109.47355 * 294.28653 * 25 23 22 48 48 H 1.09003 * 109.46841 * 54.28794 * 25 23 22 49 49 H 1.08999 * 109.91254 * 94.01886 * 26 22 21 50 50 H 1.09000 * 109.91494 * 215.11487 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1721 1.1111 -1.3839 7 6 3.8526 2.3604 -3.0849 8 7 5.0188 2.0809 -3.6247 9 14 2.6808 3.5320 -3.9474 10 1 2.9453 4.9206 -3.4923 11 1 2.8853 3.4448 -5.4156 12 1 1.2805 3.1619 -3.6198 13 16 2.4121 2.1203 1.4286 14 8 1.6868 1.4417 2.4447 15 8 2.3056 3.5187 1.1997 16 7 4.0143 1.8138 1.7138 17 6 4.4089 0.6240 2.4718 18 6 5.0372 2.7326 1.2078 19 1 4.5693 3.5773 0.7022 20 6 5.9345 3.2295 2.3645 21 6 7.3452 3.2510 1.7241 22 7 7.3397 2.0503 0.8497 23 6 8.3748 2.1499 -0.1879 24 6 8.3576 0.8850 -1.0486 25 6 9.7467 2.2983 0.4731 26 6 5.9896 1.9959 0.2479 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.3618 1.8097 -1.9454 33 1 2.0922 3.1803 -1.0758 34 1 5.2706 2.4833 -4.4706 35 1 4.4545 0.8680 3.5332 36 1 3.6771 -0.1678 2.3122 37 1 5.3889 0.2865 2.1342 38 1 5.6387 4.2302 2.6796 39 1 5.8999 2.5361 3.2048 40 1 8.1165 3.1659 2.4895 41 1 7.4859 4.1562 1.1335 42 1 8.1779 3.0191 -0.8154 43 1 8.5545 0.0158 -0.4211 44 1 7.3803 0.7794 -1.5195 45 1 9.1260 0.9588 -1.8182 46 1 10.5232 2.2702 -0.2914 47 1 9.7934 3.2493 1.0037 48 1 9.9008 1.4810 1.1777 49 1 5.9955 2.4920 -0.7226 50 1 5.6760 0.9584 0.1326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452100789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:29 Heat of formation + Delta-G solvation = -86.634898 kcal Electronic energy + Delta-G solvation = -30251.902642 eV Core-core repulsion = 26440.280661 eV Total energy + Delta-G solvation = -3811.621981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46433 -38.39993 -37.74067 -37.11026 -36.90562 -34.60014 -34.06101 -31.79301 -30.16869 -29.60160 -28.86650 -27.77674 -26.57125 -24.57386 -23.31693 -22.94427 -21.50165 -20.93544 -19.78877 -18.99394 -18.73351 -18.42919 -17.63711 -17.02874 -16.51240 -16.23375 -15.90681 -15.49615 -15.13913 -15.00119 -14.66910 -14.58325 -14.26908 -14.07033 -14.04464 -13.74993 -13.67418 -13.54277 -13.53033 -13.22611 -13.12703 -12.99407 -12.88245 -12.80483 -12.78407 -12.61003 -12.53696 -12.28224 -12.15996 -12.09708 -12.02903 -11.82174 -11.70415 -11.66488 -11.59209 -11.40963 -10.70145 -9.99044 -9.69834 -9.32449 -8.20427 -6.21302 -0.34423 1.34101 1.39573 1.44458 1.90969 2.36973 2.51109 3.07356 3.13196 3.33532 3.62397 3.76033 3.89952 4.06974 4.11659 4.21633 4.23939 4.39633 4.43438 4.44991 4.49403 4.52828 4.66276 4.72778 4.79522 4.80403 4.86468 4.92712 4.94879 4.98462 5.00198 5.01333 5.02534 5.05372 5.09361 5.15183 5.28177 5.32176 5.37552 5.42179 5.43233 5.47387 5.54244 5.64464 5.91951 6.01648 6.21951 6.39715 6.84092 7.40929 8.91919 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.006583 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.132949 B = 4252.204073 C = 6009.199901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.992 5.992 4 C 0.221 3.779 5 C -0.526 4.526 6 H 0.071 0.929 7 C 0.035 3.965 8 N -0.920 5.920 9 Si 0.905 3.095 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.250 1.250 13 S 2.791 3.209 14 O -0.996 6.996 15 O -1.014 7.014 16 N -0.992 5.992 17 C 0.093 3.907 18 C 0.146 3.854 19 H 0.075 0.925 20 C -0.126 4.126 21 C 0.039 3.961 22 N -0.508 5.508 23 C 0.068 3.932 24 C -0.134 4.134 25 C -0.131 4.131 26 C 0.055 3.945 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.039 0.961 42 H 0.017 0.983 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.031 0.969 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -2.716 10.624 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.832 5.832 4 C 0.096 3.904 5 C -0.565 4.565 6 H 0.089 0.911 7 C -0.165 4.165 8 N -0.560 5.560 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.174 1.174 13 S 2.801 3.199 14 O -0.980 6.980 15 O -0.998 6.998 16 N -0.832 5.832 17 C -0.052 4.052 18 C 0.038 3.962 19 H 0.093 0.907 20 C -0.166 4.166 21 C -0.089 4.089 22 N -0.233 5.233 23 C -0.041 4.041 24 C -0.192 4.192 25 C -0.189 4.189 26 C -0.074 4.074 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.049 0.951 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.698 -2.684 11.311 12.199 hybrid contribution -0.472 1.248 -2.052 2.448 sum 3.227 -1.436 9.258 9.909 Atomic orbital electron populations 1.22199 0.95476 1.03399 1.01566 1.21277 0.94828 0.81078 1.03263 1.57568 1.79290 1.24104 1.22240 1.19322 0.97159 0.91597 0.82343 1.21646 1.01417 1.27755 1.05698 0.91073 1.25362 0.95951 0.97396 0.97759 1.69979 1.21737 1.45090 1.19200 0.86362 0.81781 0.80479 0.78322 1.20489 1.21001 1.17390 1.01448 0.73188 0.72546 0.72670 1.93526 1.71163 1.76172 1.57186 1.93500 1.86686 1.33183 1.86445 1.57676 1.23555 1.34547 1.67430 1.21566 1.02676 0.85163 0.95802 1.21620 0.88935 0.90703 0.94921 0.90697 1.22893 0.93613 1.02383 0.97684 1.23255 0.97609 0.91400 0.96660 1.64938 1.02248 1.37806 1.18329 1.21803 0.93423 0.96749 0.92123 1.21700 1.01016 0.97581 0.98871 1.21764 0.93739 1.02454 1.00921 1.22900 0.88503 1.00573 0.95447 0.89088 0.93351 0.92855 0.90196 0.89907 0.94107 0.95585 0.92911 0.91133 0.91188 0.89632 0.89967 0.88459 0.87402 0.94290 0.96447 0.91556 0.95038 0.91998 0.91524 0.92025 0.91215 0.95062 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 10.24 71.98 0.74 -3.99 16 2 C 0.12 3.88 6.06 86.38 0.52 4.41 16 3 N -0.99 -38.78 2.82 -519.83 -1.47 -40.25 16 4 C 0.22 9.98 4.50 85.63 0.39 10.37 16 5 C -0.53 -26.53 9.47 25.60 0.24 -26.29 16 6 H 0.07 3.78 6.39 -2.91 -0.02 3.77 16 7 C 0.04 1.88 5.47 84.66 0.46 2.34 16 8 N -0.92 -51.57 13.96 21.45 0.30 -51.27 16 9 Si 0.90 41.85 27.47 68.60 1.88 43.74 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 13 S 2.79 108.33 6.02 -56.49 -0.34 107.99 16 14 O -1.00 -38.51 16.18 -128.00 -2.07 -40.58 16 15 O -1.01 -45.82 15.26 -128.00 -1.95 -47.77 16 16 N -0.99 -33.20 3.14 -511.94 -1.61 -34.81 16 17 C 0.09 2.43 8.89 127.77 1.14 3.57 16 18 C 0.15 5.06 3.39 45.87 0.16 5.22 16 19 H 0.07 3.06 6.94 -2.39 -0.02 3.04 16 20 C -0.13 -3.33 6.65 31.80 0.21 -3.12 16 21 C 0.04 0.97 5.39 86.65 0.47 1.44 16 22 N -0.51 -15.15 5.11 -857.84 -4.38 -19.54 16 23 C 0.07 2.01 2.37 44.92 0.11 2.11 16 24 C -0.13 -4.23 9.16 71.98 0.66 -3.57 16 25 C -0.13 -2.82 8.87 71.98 0.64 -2.19 16 26 C 0.06 2.04 3.45 86.44 0.30 2.34 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 31 H 0.08 2.34 7.26 -2.39 -0.02 2.33 16 32 H 0.04 1.80 7.17 -2.39 -0.02 1.78 16 33 H 0.03 1.26 6.34 -2.38 -0.02 1.24 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.07 1.57 7.88 -2.38 -0.02 1.55 16 36 H 0.07 1.73 7.44 -2.39 -0.02 1.71 16 37 H 0.09 2.17 6.97 -2.39 -0.02 2.15 16 38 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.10 2.26 6.85 -2.39 -0.02 2.24 16 40 H 0.11 2.12 7.78 -2.39 -0.02 2.10 16 41 H 0.04 1.02 8.01 -2.39 -0.02 1.00 16 42 H 0.02 0.60 7.98 -2.39 -0.02 0.58 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.03 1.24 7.28 -2.39 -0.02 1.22 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.19 7.22 -2.39 -0.02 1.17 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.03 1.44 7.43 -2.39 -0.02 1.42 16 50 H 0.07 2.83 6.49 -2.39 -0.02 2.81 16 Total: -1.00 -62.67 391.64 -2.78 -65.44 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.84 Total: 24.41 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 6.02 Total: -7.37 kcal Atomic # 7 Polarization: -138.70 SS G_CDS: -7.16 Total: -145.86 kcal Atomic # 8 Polarization: -84.32 SS G_CDS: -4.03 Total: -88.35 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.74 kcal Atomic # 16 Polarization: 108.33 SS G_CDS: -0.34 Total: 107.99 kcal Total: -62.67 -2.78 -65.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452100789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.191 kcal (2) G-P(sol) polarization free energy of solvation -62.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds