Wall clock time and date at job start Tue Mar 31 2020 17:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 N 1.46900 * 109.47627 * 240.00065 * 2 1 3 5 5 C 1.48527 * 111.00367 * 178.84926 * 4 2 1 6 6 C 1.54945 * 103.22550 * 159.71998 * 5 4 2 7 7 C 1.54589 * 102.92014 * 322.58558 * 6 5 4 8 8 H 1.09004 * 110.31084 * 263.03896 * 7 6 5 9 9 N 1.46504 * 110.39159 * 140.91667 * 7 6 5 10 10 C 1.46499 * 119.99724 * 304.23526 * 9 7 6 11 11 S 1.65599 * 120.00092 * 124.23271 * 9 7 6 12 12 O 1.42105 * 106.40411 * 203.54156 * 11 9 7 13 13 O 1.42101 * 106.40107 * 336.46096 * 11 9 7 14 14 N 1.65603 * 107.21831 * 90.00043 * 11 9 7 15 15 C 1.46499 * 120.00100 * 269.99976 * 14 11 9 16 16 C 1.46501 * 119.99904 * 90.00094 * 14 11 9 17 17 H 1.09005 * 109.46978 * 359.97438 * 16 14 11 18 18 C 1.53006 * 109.47149 * 240.00353 * 16 14 11 19 19 C 1.50701 * 109.47142 * 119.99725 * 16 14 11 20 20 H 1.08001 * 119.99846 * 0.02562 * 19 16 14 21 21 C 1.37876 * 119.99678 * 179.97438 * 19 16 14 22 22 N 1.31512 * 120.00409 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99807 * 180.02562 * 21 19 16 24 24 H 1.48508 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47107 * 120.00103 * 23 21 19 26 26 H 1.48496 * 109.47597 * 240.00579 * 23 21 19 27 27 C 1.47902 * 110.99777 * 296.24907 * 4 2 1 28 28 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47641 * 299.99742 * 1 2 3 30 30 H 1.09001 * 109.47776 * 60.00408 * 1 2 3 31 31 H 1.09001 * 109.47776 * 119.99592 * 2 1 3 32 32 H 1.08996 * 109.46839 * 54.28632 * 3 2 1 33 33 H 1.09006 * 109.46976 * 174.28676 * 3 2 1 34 34 H 1.09000 * 109.46977 * 294.28635 * 3 2 1 35 35 H 1.08996 * 110.67117 * 278.15394 * 5 4 2 36 36 H 1.08996 * 110.66948 * 41.28712 * 5 4 2 37 37 H 1.09005 * 110.71965 * 204.22494 * 6 5 4 38 38 H 1.08997 * 110.87342 * 81.01740 * 6 5 4 39 39 H 1.09000 * 109.47052 * 90.00338 * 10 9 7 40 40 H 1.09003 * 109.47106 * 209.99438 * 10 9 7 41 41 H 1.08989 * 109.47404 * 329.99613 * 10 9 7 42 42 H 1.09005 * 109.46617 * 90.00147 * 15 14 11 43 43 H 1.08998 * 109.47103 * 209.99680 * 15 14 11 44 44 H 1.09001 * 109.46843 * 330.00383 * 15 14 11 45 45 H 1.09000 * 109.46821 * 59.99660 * 18 16 14 46 46 H 1.08997 * 109.46938 * 180.02562 * 18 16 14 47 47 H 1.08999 * 109.46408 * 299.99740 * 18 16 14 48 48 H 0.96995 * 120.00199 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.91849 * 333.50577 * 27 4 2 50 50 H 1.08997 * 109.91946 * 94.60082 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.5042 -0.6882 -1.2477 6 6 3.8308 -1.8541 -2.2146 7 6 2.7589 -2.9094 -1.8580 8 1 3.1672 -3.6438 -1.1637 9 7 2.2724 -3.5727 -3.0704 10 6 1.7201 -2.7768 -4.1693 11 16 2.3470 -5.2220 -3.1985 12 8 2.3496 -5.5169 -4.5886 13 8 3.3728 -5.6474 -2.3119 14 7 0.9276 -5.8252 -2.5952 15 6 0.8192 -6.1583 -1.1727 16 6 -0.2196 -6.0257 -3.4840 17 1 0.0483 -5.7240 -4.4966 18 6 -1.3974 -5.1802 -2.9952 19 6 -0.6100 -7.4813 -3.4797 20 1 -0.0590 -8.1864 -2.8750 21 6 -1.6713 -7.9126 -4.2469 22 7 -2.3426 -7.0539 -4.9828 23 14 -2.1557 -9.7167 -4.2411 24 1 -1.2496 -10.4696 -3.3369 25 1 -3.5553 -9.8519 -3.7634 26 1 -2.0476 -10.2628 -5.6177 27 6 1.6206 -2.1166 -1.1893 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5954 1.9850 0.8344 33 1 3.1251 1.4443 0.1023 34 1 1.7625 1.9260 -0.9367 35 1 3.8735 0.2568 -1.6460 36 1 3.9218 -0.8797 -0.2593 37 1 4.8319 -2.2421 -2.0265 38 1 3.7301 -1.5374 -3.2527 39 1 2.5196 -2.5048 -4.8585 40 1 0.9675 -3.3612 -4.6986 41 1 1.2624 -1.8724 -3.7687 42 1 0.4708 -5.2853 -0.6207 43 1 0.1102 -6.9761 -1.0441 44 1 1.7958 -6.4612 -0.7950 45 1 -1.1149 -4.1275 -2.9984 46 1 -2.2510 -5.3298 -3.6562 47 1 -1.6653 -5.4815 -1.9825 48 1 -3.0890 -7.3574 -5.5229 49 1 1.4845 -2.4568 -0.1627 50 1 0.6946 -2.2468 -1.7492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452106313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:14 Heat of formation + Delta-G solvation = -64.132338 kcal Electronic energy + Delta-G solvation = -29530.048127 eV Core-core repulsion = 25719.401931 eV Total energy + Delta-G solvation = -3810.646197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.66065 -36.72556 -36.18103 -36.10675 -35.20546 -33.18481 -32.57034 -29.45876 -29.10835 -28.69546 -27.04859 -25.59827 -25.45206 -25.16348 -22.37381 -20.81418 -20.47727 -20.15660 -18.40914 -17.48748 -16.89801 -16.64487 -16.22911 -15.67287 -15.46294 -14.88800 -14.55285 -14.22041 -13.82695 -13.47725 -13.44930 -13.30675 -13.12714 -12.90555 -12.68375 -12.39070 -12.28518 -12.20253 -12.03267 -11.99800 -11.79353 -11.70195 -11.39989 -11.35654 -11.34603 -11.21274 -11.13224 -10.99406 -10.96136 -10.91380 -10.83286 -10.71498 -10.41538 -10.21582 -10.05610 -9.27355 -8.81307 -8.55013 -8.45197 -7.95160 -6.07527 -4.13882 1.17771 3.27564 3.35839 3.39116 3.43338 3.78699 4.06350 4.39917 4.52835 4.53879 4.73910 4.83448 4.93102 5.06779 5.13623 5.15584 5.21265 5.24247 5.32697 5.44611 5.48846 5.60936 5.64915 5.70863 5.71361 5.74432 5.77579 5.82334 5.93580 5.99424 6.03511 6.09281 6.12827 6.14751 6.26662 6.39604 6.64657 6.74351 6.77030 6.84679 6.87358 6.94145 7.04523 7.47988 7.63424 7.79476 8.05205 8.27870 8.88280 9.51828 10.98121 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.003756 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.421311 B = 7453.791608 C = 8191.063320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 C -0.144 4.144 4 N -0.509 5.509 5 C 0.037 3.963 6 C -0.133 4.133 7 C 0.142 3.858 8 H 0.102 0.898 9 N -1.004 6.004 10 C 0.096 3.904 11 S 2.775 3.225 12 O -0.970 6.970 13 O -0.997 6.997 14 N -0.989 5.989 15 C 0.098 3.902 16 C 0.268 3.732 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.520 4.520 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.889 5.889 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.024 3.976 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.010 0.990 46 H 0.091 0.909 47 H 0.031 0.969 48 H 0.262 0.738 49 H 0.049 0.951 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 15.641 9.659 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 C -0.201 4.201 4 N -0.235 5.235 5 C -0.091 4.091 6 C -0.173 4.173 7 C 0.034 3.966 8 H 0.120 0.880 9 N -0.841 5.841 10 C -0.050 4.050 11 S 2.786 3.214 12 O -0.954 6.954 13 O -0.981 6.981 14 N -0.831 5.831 15 C -0.049 4.049 16 C 0.165 3.835 17 H 0.075 0.925 18 C -0.205 4.205 19 C -0.560 4.560 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.029 0.971 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.791 15.419 8.712 19.348 hybrid contribution -0.440 -1.137 0.904 1.518 sum 7.351 14.282 9.616 18.721 Atomic orbital electron populations 1.21836 0.94055 1.02342 1.02034 1.21817 0.96117 0.95193 0.91015 1.21845 1.00672 0.95303 1.02327 1.64856 1.08843 1.12298 1.37482 1.23187 0.88466 0.99196 0.98240 1.22876 0.98581 0.94830 1.00992 1.21647 0.93329 0.95328 0.86336 0.87961 1.58172 1.76352 1.25947 1.23644 1.21386 0.98374 0.97084 0.88122 1.02113 0.73461 0.72439 0.73391 1.93599 1.86846 1.82828 1.32130 1.93503 1.56447 1.80668 1.67506 1.57729 1.31404 1.77139 1.16822 1.21276 1.02168 1.00702 0.80744 1.18728 0.80745 0.95980 0.88019 0.92472 1.22095 1.02295 0.95162 1.00909 1.21374 1.14568 0.92898 1.27130 0.91915 1.24900 0.96054 0.97867 0.95029 1.69863 1.20921 1.33799 1.28204 0.86456 0.78175 0.84886 0.77974 1.19751 1.21007 1.20884 1.23329 0.99800 0.87471 0.99906 0.92429 0.92462 0.91711 0.94181 0.92358 0.92874 0.91676 0.89901 0.93725 0.90578 0.89639 0.93124 0.90761 0.90546 0.94647 0.89858 0.92105 0.97080 0.89011 0.94950 0.92760 0.93230 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.16 37.15 0.34 -0.97 16 2 C 0.07 0.61 2.37 -67.71 -0.16 0.45 16 3 C -0.14 -1.09 8.87 37.16 0.33 -0.76 16 4 N -0.51 -5.30 5.11 -222.51 -1.14 -6.43 16 5 C 0.04 0.35 5.39 -1.90 -0.01 0.34 16 6 C -0.13 -1.44 6.65 -24.87 -0.17 -1.60 16 7 C 0.14 1.83 3.39 -66.58 -0.23 1.60 16 8 H 0.10 1.38 6.94 -51.93 -0.36 1.02 16 9 N -1.00 -15.48 3.14 -113.16 -0.36 -15.84 16 10 C 0.10 1.36 8.89 59.85 0.53 1.89 16 11 S 2.78 55.10 6.06 -107.50 -0.65 54.45 16 12 O -0.97 -22.82 15.78 -57.17 -0.90 -23.72 16 13 O -1.00 -20.59 15.31 -57.17 -0.88 -21.46 16 14 N -0.99 -20.43 3.12 -115.85 -0.36 -20.79 16 15 C 0.10 1.73 9.65 59.85 0.58 2.31 16 16 C 0.27 6.48 2.62 -69.08 -0.18 6.30 16 17 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 18 C -0.15 -3.24 8.97 37.16 0.33 -2.90 16 19 C -0.52 -13.93 7.99 -34.44 -0.28 -14.20 16 20 H 0.06 1.68 7.33 -52.49 -0.38 1.29 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -24.55 11.32 55.43 0.63 -23.93 16 23 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 C 0.02 0.29 4.66 -2.76 -0.01 0.27 16 28 H 0.06 0.57 7.28 -51.93 -0.38 0.19 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.37 7.98 -51.93 -0.41 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.38 7.22 -51.93 -0.38 0.00 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.69 7.78 -51.93 -0.40 0.29 16 36 H 0.04 0.39 8.01 -51.93 -0.42 -0.02 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.94 6.85 -51.93 -0.36 0.59 16 39 H 0.05 0.66 7.88 -51.93 -0.41 0.25 16 40 H 0.07 1.18 7.79 -51.93 -0.40 0.78 16 41 H 0.08 0.96 6.97 -51.94 -0.36 0.59 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.55 7.02 -51.93 -0.36 1.19 16 44 H 0.06 1.02 7.02 -51.93 -0.36 0.65 16 45 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 47 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 48 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.05 0.55 7.64 -51.93 -0.40 0.16 16 50 H 0.09 1.22 7.12 -51.93 -0.37 0.85 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -30.80 391.42 -10.72 -41.52 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.93 Total: -0.10 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 0.99 Total: -5.64 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -1.23 Total: -66.98 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.78 Total: -45.19 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 55.10 SS G_CDS: -0.65 Total: 54.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.80 -10.72 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.614 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds