Wall clock time and date at job start Tue Mar 31 2020 17:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 N 1.46900 * 109.47627 * 240.00065 * 2 1 3 5 5 C 1.48527 * 111.00367 * 178.84926 * 4 2 1 6 6 C 1.54945 * 103.22550 * 159.71998 * 5 4 2 7 7 C 1.54589 * 102.92014 * 322.58558 * 6 5 4 8 8 H 1.09004 * 110.31084 * 263.03896 * 7 6 5 9 9 N 1.46504 * 110.39159 * 140.91667 * 7 6 5 10 10 C 1.46499 * 119.99724 * 304.23526 * 9 7 6 11 11 S 1.65599 * 120.00092 * 124.23271 * 9 7 6 12 12 O 1.42105 * 106.40411 * 203.54156 * 11 9 7 13 13 O 1.42101 * 106.40107 * 336.46096 * 11 9 7 14 14 N 1.65603 * 107.21831 * 90.00043 * 11 9 7 15 15 C 1.46499 * 120.00100 * 269.99976 * 14 11 9 16 16 C 1.46501 * 119.99904 * 90.00094 * 14 11 9 17 17 H 1.09005 * 109.46978 * 359.97438 * 16 14 11 18 18 C 1.53006 * 109.47149 * 240.00353 * 16 14 11 19 19 C 1.50701 * 109.47142 * 119.99725 * 16 14 11 20 20 H 1.08001 * 119.99846 * 0.02562 * 19 16 14 21 21 C 1.37876 * 119.99678 * 179.97438 * 19 16 14 22 22 N 1.31512 * 120.00409 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99807 * 180.02562 * 21 19 16 24 24 H 1.48508 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47107 * 120.00103 * 23 21 19 26 26 H 1.48496 * 109.47597 * 240.00579 * 23 21 19 27 27 C 1.47902 * 110.99777 * 296.24907 * 4 2 1 28 28 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47641 * 299.99742 * 1 2 3 30 30 H 1.09001 * 109.47776 * 60.00408 * 1 2 3 31 31 H 1.09001 * 109.47776 * 119.99592 * 2 1 3 32 32 H 1.08996 * 109.46839 * 54.28632 * 3 2 1 33 33 H 1.09006 * 109.46976 * 174.28676 * 3 2 1 34 34 H 1.09000 * 109.46977 * 294.28635 * 3 2 1 35 35 H 1.08996 * 110.67117 * 278.15394 * 5 4 2 36 36 H 1.08996 * 110.66948 * 41.28712 * 5 4 2 37 37 H 1.09005 * 110.71965 * 204.22494 * 6 5 4 38 38 H 1.08997 * 110.87342 * 81.01740 * 6 5 4 39 39 H 1.09000 * 109.47052 * 90.00338 * 10 9 7 40 40 H 1.09003 * 109.47106 * 209.99438 * 10 9 7 41 41 H 1.08989 * 109.47404 * 329.99613 * 10 9 7 42 42 H 1.09005 * 109.46617 * 90.00147 * 15 14 11 43 43 H 1.08998 * 109.47103 * 209.99680 * 15 14 11 44 44 H 1.09001 * 109.46843 * 330.00383 * 15 14 11 45 45 H 1.09000 * 109.46821 * 59.99660 * 18 16 14 46 46 H 1.08997 * 109.46938 * 180.02562 * 18 16 14 47 47 H 1.08999 * 109.46408 * 299.99740 * 18 16 14 48 48 H 0.96995 * 120.00199 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.91849 * 333.50577 * 27 4 2 50 50 H 1.08997 * 109.91946 * 94.60082 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.5042 -0.6882 -1.2477 6 6 3.8308 -1.8541 -2.2146 7 6 2.7589 -2.9094 -1.8580 8 1 3.1672 -3.6438 -1.1637 9 7 2.2724 -3.5727 -3.0704 10 6 1.7201 -2.7768 -4.1693 11 16 2.3470 -5.2220 -3.1985 12 8 2.3496 -5.5169 -4.5886 13 8 3.3728 -5.6474 -2.3119 14 7 0.9276 -5.8252 -2.5952 15 6 0.8192 -6.1583 -1.1727 16 6 -0.2196 -6.0257 -3.4840 17 1 0.0483 -5.7240 -4.4966 18 6 -1.3974 -5.1802 -2.9952 19 6 -0.6100 -7.4813 -3.4797 20 1 -0.0590 -8.1864 -2.8750 21 6 -1.6713 -7.9126 -4.2469 22 7 -2.3426 -7.0539 -4.9828 23 14 -2.1557 -9.7167 -4.2411 24 1 -1.2496 -10.4696 -3.3369 25 1 -3.5553 -9.8519 -3.7634 26 1 -2.0476 -10.2628 -5.6177 27 6 1.6206 -2.1166 -1.1893 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5954 1.9850 0.8344 33 1 3.1251 1.4443 0.1023 34 1 1.7625 1.9260 -0.9367 35 1 3.8735 0.2568 -1.6460 36 1 3.9218 -0.8797 -0.2593 37 1 4.8319 -2.2421 -2.0265 38 1 3.7301 -1.5374 -3.2527 39 1 2.5196 -2.5048 -4.8585 40 1 0.9675 -3.3612 -4.6986 41 1 1.2624 -1.8724 -3.7687 42 1 0.4708 -5.2853 -0.6207 43 1 0.1102 -6.9761 -1.0441 44 1 1.7958 -6.4612 -0.7950 45 1 -1.1149 -4.1275 -2.9984 46 1 -2.2510 -5.3298 -3.6562 47 1 -1.6653 -5.4815 -1.9825 48 1 -3.0890 -7.3574 -5.5229 49 1 1.4845 -2.4568 -0.1627 50 1 0.6946 -2.2468 -1.7492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452106313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:13 Heat of formation + Delta-G solvation = -85.639180 kcal Electronic energy + Delta-G solvation = -29530.980734 eV Core-core repulsion = 25719.401931 eV Total energy + Delta-G solvation = -3811.578803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53664 -38.40217 -37.87778 -37.16549 -36.88998 -34.52185 -34.08764 -30.92446 -30.24154 -29.64325 -27.81779 -27.23972 -27.01962 -26.62997 -23.20021 -22.53592 -21.53911 -20.97888 -19.79667 -19.00055 -18.62948 -18.10481 -17.58903 -17.03951 -16.62872 -16.33329 -15.72601 -15.31097 -15.13184 -14.94234 -14.88136 -14.43149 -14.25726 -14.08909 -13.80316 -13.76190 -13.59414 -13.43994 -13.21727 -13.16064 -13.05681 -13.01647 -12.89267 -12.82578 -12.71188 -12.64206 -12.61208 -12.30963 -12.14071 -12.11341 -12.08283 -11.90420 -11.84670 -11.68696 -11.60202 -11.16844 -10.50917 -10.02916 -9.64140 -9.32969 -8.11857 -6.25202 -0.37987 1.40774 1.43827 1.54033 1.98216 2.41856 2.54223 3.01335 3.16411 3.34020 3.58483 3.66252 3.98804 4.03252 4.16033 4.17861 4.20139 4.34736 4.41496 4.48327 4.62094 4.69311 4.72384 4.74148 4.78543 4.86522 4.87320 4.97518 4.97769 5.00793 5.02583 5.03377 5.06096 5.07679 5.15217 5.16402 5.22413 5.27007 5.37664 5.43913 5.56912 5.61389 5.80852 5.88923 5.96376 6.15245 6.19378 6.30414 6.82294 7.43535 8.92366 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.003756 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.421311 B = 7453.791608 C = 8191.063320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 C -0.139 4.139 4 N -0.516 5.516 5 C 0.043 3.957 6 C -0.131 4.131 7 C 0.133 3.867 8 H 0.098 0.902 9 N -0.994 5.994 10 C 0.096 3.904 11 S 2.788 3.212 12 O -1.013 7.013 13 O -1.007 7.007 14 N -0.997 5.997 15 C 0.094 3.906 16 C 0.275 3.725 17 H 0.024 0.976 18 C -0.130 4.130 19 C -0.539 4.539 20 H 0.056 0.944 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.954 3.046 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.284 1.284 27 C 0.031 3.969 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.264 0.736 49 H 0.056 0.944 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 17.061 11.305 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.196 4.196 4 N -0.242 5.242 5 C -0.085 4.085 6 C -0.171 4.171 7 C 0.026 3.974 8 H 0.116 0.884 9 N -0.834 5.834 10 C -0.049 4.049 11 S 2.799 3.201 12 O -0.997 6.997 13 O -0.991 6.991 14 N -0.838 5.838 15 C -0.051 4.051 16 C 0.171 3.829 17 H 0.042 0.958 18 C -0.189 4.189 19 C -0.579 4.579 20 H 0.074 0.926 21 C -0.181 4.181 22 N -0.551 5.551 23 Si 0.780 3.220 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.210 1.210 27 C -0.099 4.099 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.295 16.836 10.383 21.449 hybrid contribution -0.534 -1.500 0.424 1.647 sum 7.760 15.336 10.807 20.303 Atomic orbital electron populations 1.21822 0.94210 1.01667 1.02366 1.21892 0.96023 0.95961 0.90456 1.21804 1.01138 0.94175 1.02510 1.64869 1.09617 1.11254 1.38451 1.23203 0.87761 0.99124 0.98363 1.22894 0.98171 0.94646 1.01406 1.21916 0.94614 0.95722 0.85145 0.88413 1.57804 1.76344 1.24232 1.24995 1.21463 0.98420 0.97010 0.87961 1.01505 0.73059 0.73391 0.72179 1.93539 1.87307 1.84145 1.34706 1.93478 1.56644 1.81563 1.67411 1.57622 1.30397 1.78174 1.17599 1.21433 1.02590 1.01702 0.79407 1.18385 0.82226 0.94994 0.87313 0.95848 1.21863 1.00408 0.96278 1.00377 1.21685 1.14705 0.94324 1.27170 0.92600 1.25616 0.96161 1.01543 0.94806 1.69974 1.21217 1.35296 1.28611 0.85567 0.78204 0.80480 0.77732 1.19491 1.19953 1.21011 1.23186 0.98559 0.88341 0.99793 0.93576 0.91102 0.92432 0.93971 0.91241 0.92187 0.92252 0.88471 0.92740 0.89813 0.89766 0.91799 0.92952 0.88501 0.91678 0.91005 0.91162 0.94737 0.91617 0.94194 0.92635 0.92587 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.16 71.98 0.66 -1.64 16 2 C 0.06 1.01 2.37 44.91 0.11 1.12 16 3 C -0.14 -1.71 8.87 71.98 0.64 -1.07 16 4 N -0.52 -9.46 5.11 -857.88 -4.38 -13.85 16 5 C 0.04 0.68 5.39 86.65 0.47 1.15 16 6 C -0.13 -2.54 6.65 31.80 0.21 -2.33 16 7 C 0.13 3.21 3.39 45.87 0.16 3.37 16 8 H 0.10 2.47 6.94 -2.39 -0.02 2.46 16 9 N -0.99 -29.94 3.14 -511.94 -1.61 -31.55 16 10 C 0.10 2.68 8.89 127.77 1.14 3.82 16 11 S 2.79 111.30 6.06 -56.49 -0.34 110.96 16 12 O -1.01 -49.08 15.78 -128.00 -2.02 -51.09 16 13 O -1.01 -41.19 15.31 -128.00 -1.96 -43.15 16 14 N -1.00 -41.30 3.12 -520.42 -1.62 -42.93 16 15 C 0.09 3.26 9.65 127.77 1.23 4.49 16 16 C 0.28 13.55 2.62 44.25 0.12 13.67 16 17 H 0.02 1.32 6.91 -2.38 -0.02 1.30 16 18 C -0.13 -5.80 8.97 71.98 0.65 -5.15 16 19 C -0.54 -29.35 7.99 25.60 0.20 -29.14 16 20 H 0.06 3.04 7.33 -2.91 -0.02 3.01 16 21 C 0.02 1.02 5.30 84.65 0.45 1.47 16 22 N -0.91 -51.16 11.32 21.45 0.24 -50.92 16 23 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 C 0.03 0.66 4.66 86.45 0.40 1.07 16 28 H 0.05 0.84 7.28 -2.39 -0.02 0.82 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 0.66 7.98 -2.39 -0.02 0.64 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.66 7.22 -2.38 -0.02 0.64 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.29 7.78 -2.39 -0.02 1.27 16 36 H 0.05 0.77 8.01 -2.39 -0.02 0.75 16 37 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.67 6.85 -2.39 -0.02 1.65 16 39 H 0.06 1.61 7.88 -2.39 -0.02 1.59 16 40 H 0.05 1.70 7.79 -2.39 -0.02 1.68 16 41 H 0.10 2.29 6.97 -2.39 -0.02 2.27 16 42 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.07 2.64 7.02 -2.39 -0.02 2.62 16 44 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 3.31 6.07 -2.39 -0.01 3.29 16 47 H 0.04 1.67 7.67 -2.39 -0.02 1.66 16 48 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 49 H 0.06 1.13 7.64 -2.39 -0.02 1.11 16 50 H 0.08 1.96 7.12 -2.39 -0.02 1.94 16 Total: -1.00 -66.49 391.42 -2.35 -68.84 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.90 Total: 17.42 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 6.43 Total: -9.18 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -7.37 Total: -139.24 kcal Atomic # 8 Polarization: -90.26 SS G_CDS: -3.98 Total: -94.24 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 111.30 SS G_CDS: -0.34 Total: 110.96 kcal Total: -66.49 -2.35 -68.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.802 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds