Wall clock time and date at job start Tue Mar 31 2020 17:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47529 * 2 1 4 4 N 1.46898 * 109.47416 * 120.00356 * 2 1 3 5 5 C 1.48533 * 111.00490 * 181.05808 * 4 2 1 6 6 C 1.55096 * 103.28731 * 200.32907 * 5 4 2 7 7 C 1.54596 * 102.84485 * 37.30768 * 6 5 4 8 8 H 1.08997 * 110.30565 * 97.11426 * 7 6 5 9 9 N 1.46498 * 110.30773 * 219.18373 * 7 6 5 10 10 C 1.46504 * 120.00013 * 57.20946 * 9 7 6 11 11 S 1.65600 * 120.00162 * 237.20750 * 9 7 6 12 12 O 1.42096 * 106.40250 * 156.45922 * 11 9 7 13 13 O 1.42107 * 106.39896 * 23.54096 * 11 9 7 14 14 N 1.65598 * 107.21679 * 270.00455 * 11 9 7 15 15 C 1.46500 * 119.99842 * 269.99355 * 14 11 9 16 16 C 1.46505 * 120.00349 * 90.00222 * 14 11 9 17 17 H 1.09004 * 109.46584 * 359.97438 * 16 14 11 18 18 C 1.52995 * 109.47377 * 119.99482 * 16 14 11 19 19 C 1.50697 * 109.46711 * 239.99979 * 16 14 11 20 20 H 1.07995 * 120.00125 * 354.36597 * 19 16 14 21 21 C 1.37879 * 119.99721 * 174.37751 * 19 16 14 22 22 N 1.31513 * 120.00128 * 157.11942 * 21 19 16 23 23 Si 1.86795 * 120.00002 * 337.11275 * 21 19 16 24 24 H 1.48500 * 109.47436 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47564 * 300.00790 * 23 21 19 26 26 H 1.48503 * 109.47068 * 60.00388 * 23 21 19 27 27 C 1.47897 * 111.00275 * 63.66050 * 4 2 1 28 28 H 1.08998 * 109.47189 * 59.99948 * 1 2 3 29 29 H 1.09005 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46826 * 299.99792 * 1 2 3 31 31 H 1.09007 * 109.47213 * 239.99836 * 2 1 3 32 32 H 1.08993 * 109.47369 * 185.74594 * 3 2 1 33 33 H 1.09001 * 109.46683 * 305.75021 * 3 2 1 34 34 H 1.09000 * 109.46896 * 65.74213 * 3 2 1 35 35 H 1.08995 * 110.66413 * 318.71693 * 5 4 2 36 36 H 1.09011 * 110.66362 * 81.67294 * 5 4 2 37 37 H 1.09000 * 110.71084 * 278.99672 * 6 5 4 38 38 H 1.09003 * 110.81208 * 155.66448 * 6 5 4 39 39 H 1.08995 * 109.47375 * 269.99750 * 10 9 7 40 40 H 1.09002 * 109.46859 * 29.99933 * 10 9 7 41 41 H 1.08999 * 109.46698 * 149.99510 * 10 9 7 42 42 H 1.09004 * 109.47348 * 270.00673 * 15 14 11 43 43 H 1.09000 * 109.47244 * 30.00586 * 15 14 11 44 44 H 1.08997 * 109.47131 * 150.00719 * 15 14 11 45 45 H 1.08995 * 109.47270 * 173.19357 * 18 16 14 46 46 H 1.09006 * 109.47159 * 293.19444 * 18 16 14 47 47 H 1.09003 * 109.46946 * 53.19331 * 18 16 14 48 48 H 0.96999 * 119.99800 * 354.91995 * 22 21 19 49 49 H 1.08998 * 109.91782 * 26.49606 * 27 4 2 50 50 H 1.09005 * 109.91963 * 265.20186 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.5043 -0.6903 1.2466 6 6 3.8320 -1.8578 2.2135 7 6 2.7565 -2.9101 1.8586 8 1 3.1623 -3.6465 1.1649 9 7 2.2708 -3.5702 3.0729 10 6 1.6939 -2.7738 4.1588 11 16 2.3737 -5.2167 3.2180 12 8 2.3686 -5.4978 4.6109 13 8 3.4153 -5.6320 2.3451 14 7 0.9712 -5.8512 2.6077 15 6 -0.1805 -6.0638 3.4878 16 6 0.8821 -6.2001 1.1876 17 1 1.8289 -5.9728 0.6976 18 6 0.5803 -7.6934 1.0472 19 6 -0.2213 -5.4017 0.5425 20 1 -0.8574 -4.7728 1.1475 21 6 -0.4187 -5.4744 -0.8202 22 7 -1.5925 -5.1738 -1.3315 23 14 0.9811 -5.9995 -1.9400 24 1 0.5150 -5.9961 -3.3500 25 1 2.1155 -5.0528 -1.7918 26 1 1.4258 -7.3668 -1.5686 27 6 1.6189 -2.1161 1.1903 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.1251 1.4442 -0.1029 33 1 1.5951 1.9851 -0.8341 34 1 1.7631 1.9257 0.9369 35 1 3.9209 -0.8827 0.2579 36 1 3.8751 0.2558 1.6414 37 1 3.7319 -1.5387 3.2510 38 1 4.8316 -2.2487 2.0239 39 1 2.4818 -2.4807 4.8526 40 1 1.2238 -1.8817 3.7450 41 1 0.9469 -3.3665 4.6868 42 1 -0.1295 -7.0641 3.9178 43 1 -0.1681 -5.3234 4.2877 44 1 -1.1008 -5.9620 2.9128 45 1 0.3946 -7.9296 -0.0005 46 1 1.4326 -8.2715 1.4045 47 1 -0.3013 -7.9429 1.6377 48 1 -2.3393 -4.9727 -0.7461 49 1 1.4816 -2.4567 0.1640 50 1 0.6949 -2.2454 1.7540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452106314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:17 Heat of formation + Delta-G solvation = -64.613169 kcal Electronic energy + Delta-G solvation = -30236.888781 eV Core-core repulsion = 26426.221734 eV Total energy + Delta-G solvation = -3810.667047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.41140 -36.87249 -36.34483 -36.01546 -35.36770 -33.02811 -32.63995 -29.82192 -29.19300 -28.52710 -26.83089 -25.80674 -25.39284 -24.69978 -22.13148 -20.77654 -20.26567 -19.87649 -18.43749 -17.58089 -17.40279 -16.94446 -16.43196 -15.61296 -15.29169 -14.74380 -14.24952 -14.01143 -13.89237 -13.64742 -13.37968 -13.10326 -13.07240 -12.91526 -12.65431 -12.39581 -12.13049 -12.09472 -12.03522 -11.93553 -11.91128 -11.77712 -11.59703 -11.54528 -11.43486 -11.35107 -11.12388 -10.98614 -10.84372 -10.76534 -10.67710 -10.56846 -10.46009 -10.10174 -9.85544 -9.28488 -8.79665 -8.42853 -8.27523 -8.07685 -6.55980 -4.18454 1.08933 3.30963 3.32451 3.38856 3.53179 3.96900 4.06994 4.39279 4.70852 4.74474 4.78449 5.04824 5.07749 5.14505 5.16857 5.25823 5.42302 5.49428 5.50955 5.53683 5.70216 5.71469 5.76148 5.82988 5.86630 5.95532 5.97510 5.98887 6.01160 6.06691 6.07910 6.16118 6.26577 6.34906 6.37090 6.42850 6.46273 6.50194 6.56044 6.65630 6.83031 7.01634 7.03923 7.21935 7.28167 7.48092 7.93478 8.27221 8.80894 9.46223 10.78707 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.006710 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.243407 B = 4171.689683 C = 5881.478738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.142 4.142 4 N -0.512 5.512 5 C 0.036 3.964 6 C -0.133 4.133 7 C 0.145 3.855 8 H 0.104 0.896 9 N -0.998 5.998 10 C 0.099 3.901 11 S 2.778 3.222 12 O -0.992 6.992 13 O -0.983 6.983 14 N -0.985 5.985 15 C 0.108 3.892 16 C 0.247 3.753 17 H 0.043 0.957 18 C -0.153 4.153 19 C -0.611 4.611 20 H 0.067 0.933 21 C 0.046 3.954 22 N -0.892 5.892 23 Si 1.018 2.982 24 H -0.283 1.283 25 H -0.280 1.280 26 H -0.273 1.273 27 C 0.031 3.969 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.026 0.974 47 H 0.049 0.951 48 H 0.270 0.730 49 H 0.061 0.939 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.247 9.210 5.733 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.199 4.199 4 N -0.237 5.237 5 C -0.092 4.092 6 C -0.173 4.173 7 C 0.037 3.963 8 H 0.122 0.878 9 N -0.836 5.836 10 C -0.047 4.047 11 S 2.789 3.211 12 O -0.976 6.976 13 O -0.967 6.967 14 N -0.827 5.827 15 C -0.038 4.038 16 C 0.142 3.858 17 H 0.061 0.939 18 C -0.213 4.213 19 C -0.650 4.650 20 H 0.085 0.915 21 C -0.162 4.162 22 N -0.524 5.524 23 Si 0.846 3.154 24 H -0.208 1.208 25 H -0.207 1.207 26 H -0.199 1.199 27 C -0.098 4.098 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.133 8.794 4.968 12.365 hybrid contribution -0.562 -0.011 0.641 0.853 sum 6.570 8.783 5.609 12.319 Atomic orbital electron populations 1.21822 0.93983 1.02876 1.01527 1.21806 0.96246 0.94869 0.91266 1.21833 1.00509 0.95526 1.02070 1.64881 1.08387 1.12943 1.37531 1.23199 0.88952 0.98764 0.98266 1.22907 0.98576 0.95098 1.00684 1.21676 0.93498 0.95449 0.85654 0.87815 1.57942 1.75638 1.25641 1.24374 1.21339 0.97706 0.97179 0.88471 1.01971 0.73767 0.72655 0.72720 1.93542 1.87457 1.83907 1.32711 1.93553 1.54773 1.80797 1.67611 1.57579 1.29191 1.77011 1.18904 1.21197 0.90720 0.99486 0.92391 1.18940 0.98189 0.92825 0.75831 0.93892 1.22389 0.99468 0.97905 1.01535 1.22106 1.17601 1.30730 0.94547 0.91512 1.25497 0.99903 0.94430 0.96388 1.70852 1.00321 1.41982 1.39256 0.84409 0.76204 0.77808 0.77006 1.20823 1.20661 1.19921 1.23227 0.98995 0.86423 1.01112 0.92566 0.91828 0.92189 0.93949 0.93020 0.92442 0.91918 0.93729 0.90115 0.89963 0.90689 0.93156 0.90239 0.91790 0.93881 0.93103 0.90095 0.92128 0.95527 0.93156 0.91964 0.92081 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.16 37.16 0.34 -1.58 16 2 C 0.07 0.86 2.37 -67.71 -0.16 0.70 16 3 C -0.14 -1.46 8.87 37.16 0.33 -1.14 16 4 N -0.51 -6.93 5.11 -222.39 -1.14 -8.06 16 5 C 0.04 0.44 5.40 -1.81 -0.01 0.43 16 6 C -0.13 -1.71 6.66 -24.78 -0.17 -1.87 16 7 C 0.14 2.31 3.38 -66.57 -0.23 2.08 16 8 H 0.10 1.85 6.96 -51.93 -0.36 1.49 16 9 N -1.00 -16.29 3.15 -113.16 -0.36 -16.65 16 10 C 0.10 1.34 8.94 59.85 0.53 1.87 16 11 S 2.78 53.84 6.01 -107.50 -0.65 53.19 16 12 O -0.99 -20.08 16.28 -57.17 -0.93 -21.01 16 13 O -0.98 -21.39 15.29 -57.17 -0.87 -22.26 16 14 N -0.99 -19.77 3.12 -115.85 -0.36 -20.13 16 15 C 0.11 1.90 9.15 59.85 0.55 2.45 16 16 C 0.25 5.59 2.22 -69.08 -0.15 5.44 16 17 H 0.04 1.03 5.49 -51.93 -0.29 0.74 16 18 C -0.15 -3.30 9.02 37.16 0.34 -2.97 16 19 C -0.61 -15.16 8.30 -34.44 -0.29 -15.45 16 20 H 0.07 1.76 7.38 -52.49 -0.39 1.37 16 21 C 0.05 1.20 5.20 -17.82 -0.09 1.10 16 22 N -0.89 -24.99 13.70 55.43 0.76 -24.23 16 23 Si 1.02 23.73 26.43 -169.99 -4.49 19.23 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.04 6.13 56.52 0.35 -5.69 16 27 C 0.03 0.51 4.65 -2.76 -0.01 0.49 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.00 7.28 -51.93 -0.38 0.62 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.59 7.98 -51.92 -0.41 0.18 16 32 H 0.05 0.50 7.22 -51.93 -0.38 0.12 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.53 8.01 -51.93 -0.42 0.12 16 36 H 0.08 0.84 7.78 -51.92 -0.40 0.43 16 37 H 0.08 1.00 6.91 -51.93 -0.36 0.64 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.61 7.88 -51.93 -0.41 0.20 16 40 H 0.08 1.01 6.87 -51.93 -0.36 0.66 16 41 H 0.06 0.85 7.37 -51.93 -0.38 0.46 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.78 7.37 -51.93 -0.38 0.40 16 44 H 0.08 1.48 6.92 -51.93 -0.36 1.12 16 45 H 0.06 1.34 5.45 -51.93 -0.28 1.06 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 48 H 0.27 7.55 8.73 -40.82 -0.36 7.19 16 49 H 0.06 1.11 7.64 -51.93 -0.40 0.72 16 50 H 0.09 1.59 7.01 -51.93 -0.36 1.22 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -29.09 387.42 -10.09 -39.17 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.87 Total: 3.35 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 0.98 Total: -8.45 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.09 Total: -69.07 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.81 Total: -43.27 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.49 Total: 19.23 kcal Atomic # 16 Polarization: 53.84 SS G_CDS: -0.65 Total: 53.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.09 -10.09 -39.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.443 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds