Wall clock time and date at job start Tue Mar 31 2020 17:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47529 * 2 1 4 4 N 1.46898 * 109.47416 * 120.00356 * 2 1 3 5 5 C 1.48533 * 111.00490 * 181.05808 * 4 2 1 6 6 C 1.55096 * 103.28731 * 200.32907 * 5 4 2 7 7 C 1.54596 * 102.84485 * 37.30768 * 6 5 4 8 8 H 1.08997 * 110.30565 * 97.11426 * 7 6 5 9 9 N 1.46498 * 110.30773 * 219.18373 * 7 6 5 10 10 C 1.46504 * 120.00013 * 57.20946 * 9 7 6 11 11 S 1.65600 * 120.00162 * 237.20750 * 9 7 6 12 12 O 1.42096 * 106.40250 * 156.45922 * 11 9 7 13 13 O 1.42107 * 106.39896 * 23.54096 * 11 9 7 14 14 N 1.65598 * 107.21679 * 270.00455 * 11 9 7 15 15 C 1.46500 * 119.99842 * 269.99355 * 14 11 9 16 16 C 1.46505 * 120.00349 * 90.00222 * 14 11 9 17 17 H 1.09004 * 109.46584 * 359.97438 * 16 14 11 18 18 C 1.52995 * 109.47377 * 119.99482 * 16 14 11 19 19 C 1.50697 * 109.46711 * 239.99979 * 16 14 11 20 20 H 1.07995 * 120.00125 * 354.36597 * 19 16 14 21 21 C 1.37879 * 119.99721 * 174.37751 * 19 16 14 22 22 N 1.31513 * 120.00128 * 157.11942 * 21 19 16 23 23 Si 1.86795 * 120.00002 * 337.11275 * 21 19 16 24 24 H 1.48500 * 109.47436 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47564 * 300.00790 * 23 21 19 26 26 H 1.48503 * 109.47068 * 60.00388 * 23 21 19 27 27 C 1.47897 * 111.00275 * 63.66050 * 4 2 1 28 28 H 1.08998 * 109.47189 * 59.99948 * 1 2 3 29 29 H 1.09005 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46826 * 299.99792 * 1 2 3 31 31 H 1.09007 * 109.47213 * 239.99836 * 2 1 3 32 32 H 1.08993 * 109.47369 * 185.74594 * 3 2 1 33 33 H 1.09001 * 109.46683 * 305.75021 * 3 2 1 34 34 H 1.09000 * 109.46896 * 65.74213 * 3 2 1 35 35 H 1.08995 * 110.66413 * 318.71693 * 5 4 2 36 36 H 1.09011 * 110.66362 * 81.67294 * 5 4 2 37 37 H 1.09000 * 110.71084 * 278.99672 * 6 5 4 38 38 H 1.09003 * 110.81208 * 155.66448 * 6 5 4 39 39 H 1.08995 * 109.47375 * 269.99750 * 10 9 7 40 40 H 1.09002 * 109.46859 * 29.99933 * 10 9 7 41 41 H 1.08999 * 109.46698 * 149.99510 * 10 9 7 42 42 H 1.09004 * 109.47348 * 270.00673 * 15 14 11 43 43 H 1.09000 * 109.47244 * 30.00586 * 15 14 11 44 44 H 1.08997 * 109.47131 * 150.00719 * 15 14 11 45 45 H 1.08995 * 109.47270 * 173.19357 * 18 16 14 46 46 H 1.09006 * 109.47159 * 293.19444 * 18 16 14 47 47 H 1.09003 * 109.46946 * 53.19331 * 18 16 14 48 48 H 0.96999 * 119.99800 * 354.91995 * 22 21 19 49 49 H 1.08998 * 109.91782 * 26.49606 * 27 4 2 50 50 H 1.09005 * 109.91963 * 265.20186 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.5043 -0.6903 1.2466 6 6 3.8320 -1.8578 2.2135 7 6 2.7565 -2.9101 1.8586 8 1 3.1623 -3.6465 1.1649 9 7 2.2708 -3.5702 3.0729 10 6 1.6939 -2.7738 4.1588 11 16 2.3737 -5.2167 3.2180 12 8 2.3686 -5.4978 4.6109 13 8 3.4153 -5.6320 2.3451 14 7 0.9712 -5.8512 2.6077 15 6 -0.1805 -6.0638 3.4878 16 6 0.8821 -6.2001 1.1876 17 1 1.8289 -5.9728 0.6976 18 6 0.5803 -7.6934 1.0472 19 6 -0.2213 -5.4017 0.5425 20 1 -0.8574 -4.7728 1.1475 21 6 -0.4187 -5.4744 -0.8202 22 7 -1.5925 -5.1738 -1.3315 23 14 0.9811 -5.9995 -1.9400 24 1 0.5150 -5.9961 -3.3500 25 1 2.1155 -5.0528 -1.7918 26 1 1.4258 -7.3668 -1.5686 27 6 1.6189 -2.1161 1.1903 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.1251 1.4442 -0.1029 33 1 1.5951 1.9851 -0.8341 34 1 1.7631 1.9257 0.9369 35 1 3.9209 -0.8827 0.2579 36 1 3.8751 0.2558 1.6414 37 1 3.7319 -1.5387 3.2510 38 1 4.8316 -2.2487 2.0239 39 1 2.4818 -2.4807 4.8526 40 1 1.2238 -1.8817 3.7450 41 1 0.9469 -3.3665 4.6868 42 1 -0.1295 -7.0641 3.9178 43 1 -0.1681 -5.3234 4.2877 44 1 -1.1008 -5.9620 2.9128 45 1 0.3946 -7.9296 -0.0005 46 1 1.4326 -8.2715 1.4045 47 1 -0.3013 -7.9429 1.6377 48 1 -2.3393 -4.9727 -0.7461 49 1 1.4816 -2.4567 0.1640 50 1 0.6949 -2.2454 1.7540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452106314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:17 Heat of formation + Delta-G solvation = -85.537873 kcal Electronic energy + Delta-G solvation = -30237.796144 eV Core-core repulsion = 26426.221734 eV Total energy + Delta-G solvation = -3811.574410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.55980 -38.48476 -38.04781 -37.20282 -36.97148 -34.60625 -34.13435 -31.58927 -30.25845 -29.68694 -27.88210 -27.29482 -26.68684 -26.56760 -23.23084 -22.45953 -21.55469 -21.01933 -19.87761 -19.51317 -18.91980 -18.55180 -17.66028 -16.96677 -16.53221 -16.17414 -15.65674 -15.51552 -15.29606 -15.06316 -14.90093 -14.60607 -14.31610 -14.13116 -13.93927 -13.80362 -13.67890 -13.59284 -13.49431 -13.30377 -13.26874 -13.09567 -13.04153 -12.94773 -12.85214 -12.64702 -12.48773 -12.34610 -12.16626 -12.11830 -11.91401 -11.89614 -11.73890 -11.70491 -11.64661 -11.21186 -10.44691 -10.06702 -9.78682 -9.41766 -8.64965 -6.27121 -0.43159 1.45251 1.47071 1.64767 1.85076 2.44807 2.45370 2.96849 3.04021 3.25134 3.52697 3.65258 3.88805 3.97857 4.06971 4.12182 4.14013 4.32264 4.39990 4.42491 4.45201 4.58938 4.62917 4.69234 4.70487 4.74514 4.79739 4.80941 4.84438 4.89696 4.92624 4.95979 4.99474 5.02729 5.05067 5.06070 5.15204 5.21759 5.27077 5.32148 5.37362 5.50161 5.56087 5.83318 5.90734 6.00324 6.12457 6.13827 6.70819 7.42330 8.68059 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.006710 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.243407 B = 4171.689683 C = 5881.478738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 C -0.132 4.132 4 N -0.507 5.507 5 C 0.038 3.962 6 C -0.125 4.125 7 C 0.138 3.862 8 H 0.080 0.920 9 N -0.994 5.994 10 C 0.093 3.907 11 S 2.788 3.212 12 O -0.998 6.998 13 O -1.008 7.008 14 N -0.994 5.994 15 C 0.104 3.896 16 C 0.248 3.752 17 H 0.034 0.966 18 C -0.153 4.153 19 C -0.592 4.592 20 H 0.044 0.956 21 C 0.007 3.993 22 N -0.924 5.924 23 Si 1.040 2.960 24 H -0.286 1.286 25 H -0.270 1.270 26 H -0.251 1.251 27 C 0.043 3.957 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.043 0.957 47 H 0.057 0.943 48 H 0.259 0.741 49 H 0.027 0.973 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.956 10.461 6.942 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 C -0.190 4.190 4 N -0.233 5.233 5 C -0.089 4.089 6 C -0.165 4.165 7 C 0.031 3.969 8 H 0.099 0.901 9 N -0.834 5.834 10 C -0.052 4.052 11 S 2.799 3.201 12 O -0.982 6.982 13 O -0.992 6.992 14 N -0.834 5.834 15 C -0.042 4.042 16 C 0.142 3.858 17 H 0.052 0.948 18 C -0.213 4.213 19 C -0.631 4.631 20 H 0.063 0.937 21 C -0.195 4.195 22 N -0.559 5.559 23 Si 0.864 3.136 24 H -0.212 1.212 25 H -0.196 1.196 26 H -0.176 1.176 27 C -0.087 4.087 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.046 0.954 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.845 10.036 6.207 14.747 hybrid contribution -1.130 -0.335 0.347 1.228 sum 7.715 9.700 6.553 14.020 Atomic orbital electron populations 1.21777 0.94670 1.00785 1.02492 1.21893 0.95779 0.96552 0.90375 1.21762 1.01215 0.93169 1.02836 1.64917 1.09737 1.10833 1.37787 1.23308 0.87575 0.99719 0.98324 1.22919 0.97821 0.94089 1.01653 1.21739 0.94381 0.95578 0.85216 0.90150 1.57742 1.75764 1.24714 1.25179 1.21568 0.98542 0.97083 0.87972 1.01553 0.73192 0.73192 0.72173 1.93528 1.87470 1.84467 1.32777 1.93515 1.55795 1.81716 1.68215 1.57570 1.30169 1.77709 1.17957 1.21338 0.89311 1.01140 0.92364 1.18748 0.96584 0.93254 0.77216 0.94820 1.22336 1.00572 0.97054 1.01310 1.22122 1.17154 1.29640 0.94166 0.93744 1.26372 1.00617 0.94460 0.98064 1.70946 1.00882 1.44872 1.39163 0.84120 0.74774 0.79044 0.75687 1.21176 1.19583 1.17578 1.22972 0.98593 0.88332 0.98784 0.91357 0.95358 0.91452 0.95448 0.91841 0.91335 0.91417 0.93667 0.87356 0.88605 0.89572 0.91005 0.89458 0.91469 0.92409 0.90947 0.91429 0.92928 0.93797 0.92410 0.93187 0.95429 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.16 71.98 0.66 -3.08 16 2 C 0.06 1.56 2.37 44.92 0.11 1.67 16 3 C -0.13 -2.38 8.87 71.98 0.64 -1.74 16 4 N -0.51 -13.16 5.11 -857.52 -4.38 -17.54 16 5 C 0.04 0.82 5.40 86.71 0.47 1.29 16 6 C -0.13 -2.93 6.66 31.86 0.21 -2.71 16 7 C 0.14 4.35 3.38 45.87 0.16 4.50 16 8 H 0.08 2.91 6.96 -2.39 -0.02 2.89 16 9 N -0.99 -31.46 3.15 -511.92 -1.61 -33.07 16 10 C 0.09 2.33 8.94 127.77 1.14 3.48 16 11 S 2.79 105.46 6.01 -56.49 -0.34 105.12 16 12 O -1.00 -38.64 16.28 -128.00 -2.08 -40.73 16 13 O -1.01 -43.30 15.29 -128.00 -1.96 -45.26 16 14 N -0.99 -39.36 3.12 -520.44 -1.62 -40.99 16 15 C 0.10 3.56 9.15 127.77 1.17 4.73 16 16 C 0.25 11.20 2.22 44.24 0.10 11.30 16 17 H 0.03 1.61 5.49 -2.39 -0.01 1.60 16 18 C -0.15 -6.46 9.02 71.98 0.65 -5.81 16 19 C -0.59 -30.07 8.30 25.60 0.21 -29.86 16 20 H 0.04 2.43 7.38 -2.91 -0.02 2.41 16 21 C 0.01 0.38 5.20 84.66 0.44 0.82 16 22 N -0.92 -53.50 13.70 21.45 0.29 -53.21 16 23 Si 1.04 48.08 26.43 68.60 1.81 49.89 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.25 -10.68 6.13 99.48 0.61 -10.07 16 27 C 0.04 1.41 4.65 86.45 0.40 1.81 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 0.93 7.28 -2.38 -0.02 0.91 16 30 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.03 0.77 7.98 -2.38 -0.02 0.75 16 32 H 0.06 1.01 7.22 -2.39 -0.02 0.99 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.04 0.98 8.01 -2.39 -0.02 0.96 16 36 H 0.11 1.80 7.78 -2.38 -0.02 1.78 16 37 H 0.10 2.00 6.91 -2.39 -0.02 1.98 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.52 7.88 -2.39 -0.02 1.50 16 40 H 0.09 2.07 6.87 -2.39 -0.02 2.06 16 41 H 0.07 1.65 7.37 -2.39 -0.02 1.63 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.07 2.13 7.37 -2.39 -0.02 2.12 16 44 H 0.07 2.48 6.92 -2.39 -0.02 2.47 16 45 H 0.05 2.28 5.45 -2.39 -0.01 2.26 16 46 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 47 H 0.06 2.30 7.45 -2.39 -0.02 2.28 16 48 H 0.26 15.11 8.73 -92.71 -0.81 14.30 16 49 H 0.03 1.07 7.64 -2.39 -0.02 1.05 16 50 H 0.08 2.69 7.01 -2.38 -0.02 2.68 16 Total: -1.00 -63.19 387.42 -2.77 -65.96 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.77 Total: 23.44 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 6.35 Total: -13.60 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -7.32 Total: -144.81 kcal Atomic # 8 Polarization: -81.95 SS G_CDS: -4.04 Total: -85.99 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.81 Total: 49.89 kcal Atomic # 16 Polarization: 105.46 SS G_CDS: -0.34 Total: 105.12 kcal Total: -63.19 -2.77 -65.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.579 kcal (2) G-P(sol) polarization free energy of solvation -63.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds