Wall clock time and date at job start Tue Mar 31 2020 17:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 N 1.46900 * 109.47627 * 240.00065 * 2 1 3 5 5 C 1.48527 * 111.00367 * 178.84926 * 4 2 1 6 6 C 1.54939 * 103.22685 * 159.72253 * 5 4 2 7 7 C 1.54597 * 102.91932 * 322.58355 * 6 5 4 8 8 H 1.09004 * 110.31219 * 263.04100 * 7 6 5 9 9 N 1.46504 * 110.39223 * 140.91737 * 7 6 5 10 10 C 1.46499 * 119.99724 * 304.23739 * 9 7 6 11 11 S 1.65599 * 120.00092 * 124.23484 * 9 7 6 12 12 O 1.42105 * 106.40411 * 203.54156 * 11 9 7 13 13 O 1.42101 * 106.40107 * 336.46096 * 11 9 7 14 14 N 1.65603 * 107.21831 * 90.00043 * 11 9 7 15 15 C 1.46501 * 119.99904 * 90.00094 * 14 11 9 16 16 C 1.46499 * 120.00100 * 269.99976 * 14 11 9 17 17 H 1.08994 * 109.46866 * 0.02562 * 16 14 11 18 18 C 1.52996 * 109.46938 * 119.99782 * 16 14 11 19 19 C 1.50694 * 109.47102 * 239.99808 * 16 14 11 20 20 H 1.08006 * 120.00239 * 0.02562 * 19 16 14 21 21 C 1.37881 * 120.00068 * 179.97438 * 19 16 14 22 22 N 1.31510 * 119.99707 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00021 * 180.02562 * 21 19 16 24 24 H 1.48493 * 109.47265 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46910 * 119.99926 * 23 21 19 26 26 H 1.48493 * 109.47056 * 240.00133 * 23 21 19 27 27 C 1.47902 * 110.99777 * 296.24907 * 4 2 1 28 28 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47641 * 299.99742 * 1 2 3 30 30 H 1.09006 * 109.47578 * 59.99957 * 1 2 3 31 31 H 1.09006 * 109.47578 * 120.00043 * 2 1 3 32 32 H 1.08996 * 109.46839 * 54.28632 * 3 2 1 33 33 H 1.09006 * 109.46976 * 174.28676 * 3 2 1 34 34 H 1.08993 * 109.47225 * 294.28007 * 3 2 1 35 35 H 1.08996 * 110.67117 * 278.15394 * 5 4 2 36 36 H 1.08996 * 110.66948 * 41.28712 * 5 4 2 37 37 H 1.09006 * 110.72315 * 204.22970 * 6 5 4 38 38 H 1.08994 * 110.87996 * 81.01354 * 6 5 4 39 39 H 1.09004 * 109.47254 * 89.99886 * 10 9 7 40 40 H 1.09003 * 109.47106 * 209.99438 * 10 9 7 41 41 H 1.08996 * 109.47558 * 329.99977 * 10 9 7 42 42 H 1.09000 * 109.47304 * 89.99441 * 15 14 11 43 43 H 1.08993 * 109.47324 * 210.00147 * 15 14 11 44 44 H 1.09007 * 109.47167 * 330.00542 * 15 14 11 45 45 H 1.08996 * 109.47589 * 300.00495 * 18 16 14 46 46 H 1.09003 * 109.47022 * 60.00145 * 18 16 14 47 47 H 1.09001 * 109.47030 * 179.97438 * 18 16 14 48 48 H 0.97001 * 120.00012 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.91849 * 333.50577 * 27 4 2 50 50 H 1.08997 * 109.91946 * 94.60082 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.5042 -0.6882 -1.2477 6 6 3.8308 -1.8540 -2.2146 7 6 2.7589 -2.9094 -1.8580 8 1 3.1672 -3.6438 -1.1637 9 7 2.2724 -3.5727 -3.0704 10 6 1.7201 -2.7768 -4.1693 11 16 2.3470 -5.2220 -3.1985 12 8 2.3496 -5.5169 -4.5886 13 8 3.3728 -5.6474 -2.3119 14 7 0.9276 -5.8252 -2.5952 15 6 -0.2196 -6.0257 -3.4840 16 6 0.8192 -6.1583 -1.1727 17 1 1.7652 -5.9432 -0.6761 18 6 -0.2922 -5.3213 -0.5362 19 6 0.4940 -7.6221 -1.0230 20 1 0.3800 -8.2425 -1.8997 21 6 0.3431 -8.1698 0.2334 22 7 0.4825 -7.4146 1.3009 23 14 -0.0592 -9.9845 0.4190 24 1 -0.1624 -10.6086 -0.9245 25 1 1.0169 -10.6533 1.1936 26 1 -1.3512 -10.1343 1.1354 27 6 1.6206 -2.1166 -1.1893 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5954 1.9850 0.8344 33 1 3.1251 1.4443 0.1023 34 1 1.7626 1.9260 -0.9367 35 1 3.8735 0.2568 -1.6460 36 1 3.9218 -0.8797 -0.2593 37 1 4.8319 -2.2421 -2.0265 38 1 3.7301 -1.5374 -3.2527 39 1 2.5196 -2.5047 -4.8585 40 1 0.9675 -3.3612 -4.6986 41 1 1.2624 -1.8723 -3.7687 42 1 -0.1827 -7.0310 -3.9038 43 1 -1.1432 -5.9017 -2.9188 44 1 -0.1863 -5.2937 -4.2910 45 1 -0.0571 -4.2625 -0.6446 46 1 -1.2385 -5.5360 -1.0329 47 1 -0.3732 -5.5695 0.5220 48 1 0.3767 -7.8000 2.1848 49 1 1.4845 -2.4568 -0.1627 50 1 0.6946 -2.2468 -1.7492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452106315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:20 Heat of formation + Delta-G solvation = -63.926670 kcal Electronic energy + Delta-G solvation = -29765.998137 eV Core-core repulsion = 25955.360858 eV Total energy + Delta-G solvation = -3810.637278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.56332 -36.71854 -36.16836 -36.09807 -35.20463 -33.13971 -32.58170 -29.37992 -29.11724 -28.61842 -26.98564 -25.74417 -25.41585 -25.11374 -22.29175 -20.89040 -20.35569 -19.99074 -18.42570 -17.45657 -16.89742 -16.57634 -16.28694 -15.58528 -15.36222 -14.91831 -14.48689 -14.20257 -13.88934 -13.50720 -13.35041 -13.23435 -13.05186 -12.87401 -12.75285 -12.38533 -12.25562 -12.14196 -12.09554 -11.90795 -11.75248 -11.64867 -11.40350 -11.36029 -11.25124 -11.23090 -11.03518 -10.99062 -10.94816 -10.86021 -10.80049 -10.62602 -10.44189 -10.27471 -10.01994 -9.26219 -8.81700 -8.46671 -8.45064 -7.95249 -6.08683 -4.14666 1.16924 3.26923 3.35205 3.39137 3.43924 3.89416 4.07763 4.39631 4.62305 4.64151 4.79594 4.89559 5.02131 5.13169 5.18067 5.23294 5.26017 5.33500 5.42177 5.54936 5.58144 5.60385 5.68404 5.70659 5.73065 5.79916 5.81803 5.85872 5.96164 5.98920 6.08514 6.12347 6.15783 6.21120 6.33303 6.40149 6.61333 6.71242 6.78159 6.86256 6.87919 7.01117 7.04341 7.46570 7.63144 7.78020 8.03113 8.27083 8.87986 9.51294 10.97022 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.004479 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.504735 B = 6250.180612 C = 7449.139498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.143 4.143 4 N -0.511 5.511 5 C 0.037 3.963 6 C -0.132 4.132 7 C 0.141 3.859 8 H 0.108 0.892 9 N -1.004 6.004 10 C 0.098 3.902 11 S 2.776 3.224 12 O -0.993 6.993 13 O -0.974 6.974 14 N -0.990 5.990 15 C 0.111 3.889 16 C 0.269 3.731 17 H 0.056 0.944 18 C -0.148 4.148 19 C -0.518 4.518 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.891 5.891 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.026 3.974 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.012 0.988 46 H 0.033 0.967 47 H 0.092 0.908 48 H 0.262 0.738 49 H 0.056 0.944 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 16.654 -4.362 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.201 4.201 4 N -0.236 5.236 5 C -0.091 4.091 6 C -0.172 4.172 7 C 0.034 3.966 8 H 0.125 0.875 9 N -0.842 5.842 10 C -0.048 4.048 11 S 2.786 3.214 12 O -0.977 6.977 13 O -0.958 6.958 14 N -0.833 5.833 15 C -0.035 4.035 16 C 0.166 3.834 17 H 0.074 0.926 18 C -0.207 4.207 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.103 4.103 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.031 0.969 46 H 0.052 0.948 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.523 16.412 -4.988 17.221 hybrid contribution -0.325 -1.204 1.128 1.682 sum 1.199 15.208 -3.859 15.736 Atomic orbital electron populations 1.21829 0.94136 1.02424 1.01811 1.21820 0.96091 0.95101 0.91262 1.21839 1.00699 0.95368 1.02160 1.64871 1.08811 1.12462 1.37481 1.23181 0.88563 0.98993 0.98407 1.22869 0.98749 0.94903 1.00693 1.21698 0.93366 0.95497 0.86079 0.87451 1.58185 1.76422 1.25903 1.23673 1.21340 0.98105 0.97055 0.88310 1.02126 0.74001 0.72434 0.72838 1.93532 1.87434 1.83469 1.33260 1.93582 1.55565 1.79961 1.66648 1.57768 1.28750 1.77304 1.19463 1.21137 0.90236 1.00142 0.92029 1.18698 0.96484 0.95012 0.73182 0.92612 1.22129 0.98784 0.95341 1.04451 1.21383 1.48209 0.93610 0.92577 0.91938 1.24896 0.95077 0.98153 0.95716 1.69861 1.49890 1.35319 0.97914 0.86457 0.77879 0.84961 0.78227 1.19720 1.20908 1.20998 1.23318 0.99316 0.87175 1.00521 0.92281 0.92462 0.91968 0.93909 0.92383 0.92879 0.91834 0.89995 0.93552 0.90535 0.89885 0.93131 0.91646 0.90459 0.93346 0.91011 0.93443 0.96945 0.94823 0.88991 0.92802 0.92562 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.16 37.15 0.34 -1.11 16 2 C 0.07 0.68 2.37 -67.71 -0.16 0.52 16 3 C -0.14 -1.21 8.87 37.16 0.33 -0.88 16 4 N -0.51 -5.81 5.11 -222.51 -1.14 -6.95 16 5 C 0.04 0.38 5.39 -1.90 -0.01 0.37 16 6 C -0.13 -1.56 6.65 -24.87 -0.17 -1.72 16 7 C 0.14 2.04 3.39 -66.57 -0.23 1.82 16 8 H 0.11 1.78 6.94 -51.93 -0.36 1.42 16 9 N -1.00 -15.44 3.14 -113.15 -0.36 -15.80 16 10 C 0.10 1.22 8.89 59.85 0.53 1.75 16 11 S 2.78 55.18 6.01 -107.50 -0.65 54.54 16 12 O -0.99 -20.90 16.28 -57.17 -0.93 -21.83 16 13 O -0.97 -22.65 15.28 -57.17 -0.87 -23.53 16 14 N -0.99 -20.47 3.12 -115.86 -0.36 -20.83 16 15 C 0.11 1.98 9.53 59.85 0.57 2.55 16 16 C 0.27 6.46 2.62 -69.09 -0.18 6.28 16 17 H 0.06 1.49 6.91 -51.93 -0.36 1.13 16 18 C -0.15 -3.24 8.95 37.16 0.33 -2.90 16 19 C -0.52 -13.88 8.37 -34.44 -0.29 -14.17 16 20 H 0.06 1.69 7.65 -52.48 -0.40 1.28 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.48 11.32 55.43 0.63 -23.86 16 23 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.03 0.35 4.12 -2.76 -0.01 0.33 16 28 H 0.06 0.67 7.28 -51.93 -0.38 0.29 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.48 7.98 -51.93 -0.41 0.07 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.43 7.22 -51.93 -0.38 0.05 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.75 7.78 -51.93 -0.40 0.34 16 36 H 0.05 0.48 8.01 -51.93 -0.42 0.07 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.93 6.85 -51.93 -0.36 0.58 16 39 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16 40 H 0.06 0.80 7.37 -51.93 -0.38 0.41 16 41 H 0.08 0.86 6.97 -51.93 -0.36 0.50 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 44 H 0.05 0.71 7.37 -51.92 -0.38 0.33 16 45 H 0.01 0.22 7.60 -51.93 -0.39 -0.17 16 46 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 47 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 48 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 49 H 0.06 0.81 7.64 -51.93 -0.40 0.41 16 50 H 0.09 1.24 7.12 -51.93 -0.37 0.87 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -30.80 389.64 -10.69 -41.49 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.83 Total: 0.36 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 0.97 Total: -5.55 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -1.23 Total: -67.43 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.80 Total: -45.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.65 Total: 54.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.80 -10.69 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.435 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds