Wall clock time and date at job start Tue Mar 31 2020 17:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 N 1.46900 * 109.47627 * 240.00065 * 2 1 3 5 5 C 1.48527 * 111.00367 * 178.84926 * 4 2 1 6 6 C 1.54939 * 103.22685 * 159.72253 * 5 4 2 7 7 C 1.54597 * 102.91932 * 322.58355 * 6 5 4 8 8 H 1.09004 * 110.31219 * 263.04100 * 7 6 5 9 9 N 1.46504 * 110.39223 * 140.91737 * 7 6 5 10 10 C 1.46499 * 119.99724 * 304.23739 * 9 7 6 11 11 S 1.65599 * 120.00092 * 124.23484 * 9 7 6 12 12 O 1.42105 * 106.40411 * 203.54156 * 11 9 7 13 13 O 1.42101 * 106.40107 * 336.46096 * 11 9 7 14 14 N 1.65603 * 107.21831 * 90.00043 * 11 9 7 15 15 C 1.46501 * 119.99904 * 90.00094 * 14 11 9 16 16 C 1.46499 * 120.00100 * 269.99976 * 14 11 9 17 17 H 1.08994 * 109.46866 * 0.02562 * 16 14 11 18 18 C 1.52996 * 109.46938 * 119.99782 * 16 14 11 19 19 C 1.50694 * 109.47102 * 239.99808 * 16 14 11 20 20 H 1.08006 * 120.00239 * 0.02562 * 19 16 14 21 21 C 1.37881 * 120.00068 * 179.97438 * 19 16 14 22 22 N 1.31510 * 119.99707 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00021 * 180.02562 * 21 19 16 24 24 H 1.48493 * 109.47265 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46910 * 119.99926 * 23 21 19 26 26 H 1.48493 * 109.47056 * 240.00133 * 23 21 19 27 27 C 1.47902 * 110.99777 * 296.24907 * 4 2 1 28 28 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47641 * 299.99742 * 1 2 3 30 30 H 1.09006 * 109.47578 * 59.99957 * 1 2 3 31 31 H 1.09006 * 109.47578 * 120.00043 * 2 1 3 32 32 H 1.08996 * 109.46839 * 54.28632 * 3 2 1 33 33 H 1.09006 * 109.46976 * 174.28676 * 3 2 1 34 34 H 1.08993 * 109.47225 * 294.28007 * 3 2 1 35 35 H 1.08996 * 110.67117 * 278.15394 * 5 4 2 36 36 H 1.08996 * 110.66948 * 41.28712 * 5 4 2 37 37 H 1.09006 * 110.72315 * 204.22970 * 6 5 4 38 38 H 1.08994 * 110.87996 * 81.01354 * 6 5 4 39 39 H 1.09004 * 109.47254 * 89.99886 * 10 9 7 40 40 H 1.09003 * 109.47106 * 209.99438 * 10 9 7 41 41 H 1.08996 * 109.47558 * 329.99977 * 10 9 7 42 42 H 1.09000 * 109.47304 * 89.99441 * 15 14 11 43 43 H 1.08993 * 109.47324 * 210.00147 * 15 14 11 44 44 H 1.09007 * 109.47167 * 330.00542 * 15 14 11 45 45 H 1.08996 * 109.47589 * 300.00495 * 18 16 14 46 46 H 1.09003 * 109.47022 * 60.00145 * 18 16 14 47 47 H 1.09001 * 109.47030 * 179.97438 * 18 16 14 48 48 H 0.97001 * 120.00012 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.91849 * 333.50577 * 27 4 2 50 50 H 1.08997 * 109.91946 * 94.60082 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.5042 -0.6882 -1.2477 6 6 3.8308 -1.8540 -2.2146 7 6 2.7589 -2.9094 -1.8580 8 1 3.1672 -3.6438 -1.1637 9 7 2.2724 -3.5727 -3.0704 10 6 1.7201 -2.7768 -4.1693 11 16 2.3470 -5.2220 -3.1985 12 8 2.3496 -5.5169 -4.5886 13 8 3.3728 -5.6474 -2.3119 14 7 0.9276 -5.8252 -2.5952 15 6 -0.2196 -6.0257 -3.4840 16 6 0.8192 -6.1583 -1.1727 17 1 1.7652 -5.9432 -0.6761 18 6 -0.2922 -5.3213 -0.5362 19 6 0.4940 -7.6221 -1.0230 20 1 0.3800 -8.2425 -1.8997 21 6 0.3431 -8.1698 0.2334 22 7 0.4825 -7.4146 1.3009 23 14 -0.0592 -9.9845 0.4190 24 1 -0.1624 -10.6086 -0.9245 25 1 1.0169 -10.6533 1.1936 26 1 -1.3512 -10.1343 1.1354 27 6 1.6206 -2.1166 -1.1893 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5954 1.9850 0.8344 33 1 3.1251 1.4443 0.1023 34 1 1.7626 1.9260 -0.9367 35 1 3.8735 0.2568 -1.6460 36 1 3.9218 -0.8797 -0.2593 37 1 4.8319 -2.2421 -2.0265 38 1 3.7301 -1.5374 -3.2527 39 1 2.5196 -2.5047 -4.8585 40 1 0.9675 -3.3612 -4.6986 41 1 1.2624 -1.8723 -3.7687 42 1 -0.1827 -7.0310 -3.9038 43 1 -1.1432 -5.9017 -2.9188 44 1 -0.1863 -5.2937 -4.2910 45 1 -0.0571 -4.2625 -0.6446 46 1 -1.2385 -5.5360 -1.0329 47 1 -0.3732 -5.5695 0.5220 48 1 0.3767 -7.8000 2.1848 49 1 1.4845 -2.4568 -0.1627 50 1 0.6946 -2.2468 -1.7492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452106315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:19 Heat of formation + Delta-G solvation = -85.687519 kcal Electronic energy + Delta-G solvation = -29766.941758 eV Core-core repulsion = 25955.360858 eV Total energy + Delta-G solvation = -3811.580899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55333 -38.40066 -37.89900 -37.17066 -36.89016 -34.54049 -34.09899 -30.94430 -30.25820 -29.63937 -27.82882 -27.31081 -27.04815 -26.54588 -23.25895 -22.54619 -21.50979 -20.97670 -19.83465 -18.98077 -18.60713 -18.17873 -17.61385 -16.99014 -16.60532 -16.41394 -15.77058 -15.32820 -15.19441 -14.91363 -14.87059 -14.50612 -14.28456 -14.09336 -13.78610 -13.73095 -13.60258 -13.39552 -13.23851 -13.23713 -13.03537 -13.00160 -12.89745 -12.83847 -12.75039 -12.63944 -12.59279 -12.31697 -12.19860 -12.11855 -12.09994 -11.87697 -11.85380 -11.69624 -11.61191 -11.15068 -10.52356 -10.03348 -9.65150 -9.38894 -8.13352 -6.26555 -0.38944 1.39341 1.42479 1.52862 1.98316 2.40897 2.54655 2.98767 3.14996 3.32758 3.56443 3.65455 3.94888 4.01688 4.15790 4.16366 4.18164 4.32806 4.41691 4.47431 4.60409 4.67356 4.72380 4.76712 4.81857 4.85684 4.86768 4.94196 4.98689 5.00254 5.00844 5.05810 5.06657 5.07431 5.11517 5.16295 5.17018 5.25189 5.37215 5.42322 5.56008 5.61574 5.80358 5.87631 5.92401 6.13543 6.15048 6.29744 6.81020 7.42490 8.90798 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.004479 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.504735 B = 6250.180612 C = 7449.139498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 C -0.136 4.136 4 N -0.506 5.506 5 C 0.040 3.960 6 C -0.127 4.127 7 C 0.134 3.866 8 H 0.077 0.923 9 N -0.994 5.994 10 C 0.091 3.909 11 S 2.787 3.213 12 O -1.005 7.005 13 O -1.015 7.015 14 N -0.998 5.998 15 C 0.105 3.895 16 C 0.277 3.723 17 H 0.022 0.978 18 C -0.132 4.132 19 C -0.538 4.538 20 H 0.054 0.946 21 C 0.020 3.980 22 N -0.913 5.913 23 Si 0.953 3.047 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.035 3.965 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.041 0.959 47 H 0.065 0.935 48 H 0.264 0.736 49 H 0.038 0.962 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 18.586 -5.281 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.047 4.047 3 C -0.194 4.194 4 N -0.231 5.231 5 C -0.087 4.087 6 C -0.167 4.167 7 C 0.026 3.974 8 H 0.095 0.905 9 N -0.834 5.834 10 C -0.054 4.054 11 S 2.798 3.202 12 O -0.989 6.989 13 O -0.999 6.999 14 N -0.839 5.839 15 C -0.041 4.041 16 C 0.172 3.828 17 H 0.039 0.961 18 C -0.191 4.191 19 C -0.578 4.578 20 H 0.072 0.928 21 C -0.180 4.180 22 N -0.552 5.552 23 Si 0.779 3.221 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.095 4.095 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.923 18.343 -5.926 19.299 hybrid contribution -0.108 -1.740 1.387 2.228 sum 0.814 16.603 -4.539 17.232 Atomic orbital electron populations 1.21805 0.93913 1.01523 1.02642 1.21920 0.96353 0.96151 0.90291 1.21786 1.01046 0.93752 1.02790 1.64931 1.09425 1.10774 1.38013 1.23236 0.87941 0.99419 0.98147 1.22877 0.97792 0.94302 1.01737 1.21786 0.94805 0.95431 0.85330 0.90488 1.57804 1.76518 1.24230 1.24872 1.21619 0.98854 0.97290 0.87587 1.01543 0.73292 0.73401 0.71962 1.93505 1.87480 1.84345 1.33575 1.93523 1.57291 1.81428 1.67665 1.57674 1.29722 1.78179 1.18373 1.21335 0.89504 1.00758 0.92483 1.18350 0.95301 0.94132 0.74991 0.96068 1.21892 0.98371 0.96422 1.02439 1.21684 1.48428 0.95205 0.92487 0.92799 1.25598 0.95051 1.01820 0.95539 1.69972 1.50286 1.36715 0.98206 0.85586 0.77903 0.80528 0.78108 1.19560 1.20985 1.19870 1.23150 0.98743 0.88405 0.99212 0.94006 0.91255 0.91522 0.95096 0.91288 0.92348 0.91553 0.87670 0.93674 0.90348 0.88669 0.91632 0.91097 0.88573 0.94233 0.90335 0.90236 0.94539 0.93991 0.91625 0.92652 0.94349 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.16 71.98 0.66 -1.96 16 2 C 0.06 1.17 2.37 44.91 0.11 1.28 16 3 C -0.14 -1.95 8.87 71.98 0.64 -1.31 16 4 N -0.51 -10.58 5.11 -857.89 -4.38 -14.96 16 5 C 0.04 0.76 5.39 86.65 0.47 1.23 16 6 C -0.13 -2.80 6.65 31.80 0.21 -2.59 16 7 C 0.13 3.84 3.39 45.87 0.16 4.00 16 8 H 0.08 2.70 6.94 -2.39 -0.02 2.68 16 9 N -0.99 -29.74 3.14 -511.91 -1.61 -31.35 16 10 C 0.09 2.04 8.89 127.77 1.14 3.17 16 11 S 2.79 111.63 6.01 -56.49 -0.34 111.29 16 12 O -1.01 -41.70 16.28 -128.00 -2.08 -43.79 16 13 O -1.02 -49.08 15.28 -128.00 -1.96 -51.04 16 14 N -1.00 -41.52 3.12 -520.47 -1.62 -43.15 16 15 C 0.10 3.64 9.53 127.77 1.22 4.86 16 16 C 0.28 13.61 2.62 44.24 0.12 13.73 16 17 H 0.02 1.20 6.91 -2.39 -0.02 1.18 16 18 C -0.13 -5.84 8.95 71.98 0.64 -5.19 16 19 C -0.54 -29.44 8.37 25.60 0.21 -29.22 16 20 H 0.05 2.96 7.65 -2.91 -0.02 2.94 16 21 C 0.02 1.08 5.30 84.66 0.45 1.53 16 22 N -0.91 -51.16 11.32 21.45 0.24 -50.91 16 23 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.03 0.90 4.12 86.45 0.36 1.26 16 28 H 0.04 0.91 7.28 -2.39 -0.02 0.89 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.03 0.67 7.98 -2.38 -0.02 0.65 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.78 7.22 -2.38 -0.02 0.76 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 1.55 7.78 -2.39 -0.02 1.53 16 36 H 0.04 0.87 8.01 -2.39 -0.02 0.85 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.09 1.87 6.85 -2.39 -0.02 1.86 16 39 H 0.07 1.31 7.88 -2.38 -0.02 1.29 16 40 H 0.07 1.53 7.37 -2.39 -0.02 1.52 16 41 H 0.10 1.83 6.97 -2.39 -0.02 1.82 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 2.60 6.43 -2.39 -0.02 2.58 16 44 H 0.08 2.22 7.37 -2.38 -0.02 2.20 16 45 H 0.04 1.39 7.60 -2.39 -0.02 1.37 16 46 H 0.04 1.74 6.66 -2.39 -0.02 1.73 16 47 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 48 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.04 1.13 7.64 -2.39 -0.02 1.11 16 50 H 0.09 2.33 7.12 -2.39 -0.02 2.31 16 Total: -1.00 -67.21 389.64 -2.45 -69.66 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.90 Total: 17.88 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 6.37 Total: -9.23 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -7.37 Total: -140.38 kcal Atomic # 8 Polarization: -90.78 SS G_CDS: -4.04 Total: -94.82 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 111.63 SS G_CDS: -0.34 Total: 111.29 kcal Total: -67.21 -2.45 -69.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452106315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.024 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds