Wall clock time and date at job start Tue Mar 31 2020 17:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47049 * 2 1 4 4 C 1.46843 * 110.99732 * 169.99900 * 3 2 1 5 5 C 1.53038 * 109.52370 * 185.83929 * 4 3 2 6 6 C 1.53109 * 109.27684 * 300.82119 * 5 4 3 7 7 C 1.53002 * 109.52155 * 177.56073 * 6 5 4 8 8 N 1.46509 * 109.47091 * 175.12794 * 7 6 5 9 9 S 1.65598 * 119.99878 * 164.99721 * 8 7 6 10 10 O 1.42098 * 106.40577 * 311.46044 * 9 8 7 11 11 O 1.42101 * 106.40330 * 178.53780 * 9 8 7 12 12 N 1.65606 * 107.21806 * 64.99978 * 9 8 7 13 13 C 1.46502 * 120.00061 * 270.00131 * 12 9 8 14 14 C 1.46501 * 119.99949 * 89.99829 * 12 9 8 15 15 H 1.08999 * 109.47164 * 0.02562 * 14 12 9 16 16 C 1.53004 * 109.47066 * 239.99956 * 14 12 9 17 17 C 1.50697 * 109.47071 * 120.00037 * 14 12 9 18 18 H 1.07999 * 120.00028 * 5.62061 * 17 14 12 19 19 C 1.37877 * 119.99883 * 185.61387 * 17 14 12 20 20 N 1.31512 * 119.99916 * 196.97349 * 19 17 14 21 21 Si 1.86798 * 120.00059 * 17.25803 * 19 17 14 22 22 H 1.48500 * 109.47180 * 179.71899 * 21 19 17 23 23 H 1.48497 * 109.47063 * 299.72121 * 21 19 17 24 24 H 1.48504 * 109.46829 * 59.72088 * 21 19 17 25 25 C 1.53123 * 109.21553 * 57.62344 * 6 5 4 26 26 C 1.46843 * 111.00121 * 294.20674 * 3 2 1 27 27 H 1.09001 * 109.47461 * 300.00165 * 1 2 3 28 28 H 1.08999 * 109.46756 * 59.99979 * 1 2 3 29 29 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46850 * 239.99944 * 2 1 3 31 31 H 1.08999 * 109.46756 * 120.00021 * 2 1 3 32 32 H 1.08999 * 109.46201 * 65.82168 * 4 3 2 33 33 H 1.09003 * 109.46624 * 305.85521 * 4 3 2 34 34 H 1.08998 * 109.50478 * 180.87799 * 5 4 3 35 35 H 1.09002 * 109.50133 * 60.76338 * 5 4 3 36 36 H 1.08998 * 109.52695 * 297.68293 * 6 5 4 37 37 H 1.09001 * 109.47393 * 55.12707 * 7 6 5 38 38 H 1.09002 * 109.47242 * 295.12301 * 7 6 5 39 39 H 0.96997 * 120.00106 * 344.99442 * 8 7 6 40 40 H 1.09001 * 109.46622 * 269.99853 * 13 12 9 41 41 H 1.08999 * 109.47047 * 29.99454 * 13 12 9 42 42 H 1.08998 * 109.47596 * 149.99845 * 13 12 9 43 43 H 1.08995 * 109.46948 * 185.88973 * 16 14 12 44 44 H 1.09001 * 109.47142 * 305.89271 * 16 14 12 45 45 H 1.09007 * 109.46976 * 65.88597 * 16 14 12 46 46 H 0.97003 * 120.00480 * 355.09525 * 20 19 17 47 47 H 1.08994 * 109.50202 * 62.31642 * 25 6 5 48 48 H 1.09004 * 109.50309 * 182.43645 * 25 6 5 49 49 H 1.08995 * 109.46608 * 294.18532 * 26 3 2 50 50 H 1.09002 * 109.46334 * 54.16102 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 0.2381 5 6 3.9175 2.8874 0.3762 6 6 3.5677 3.6481 -0.9056 7 6 3.9596 5.1189 -0.7504 8 7 3.7325 5.8211 -2.0161 9 16 3.7103 7.4765 -2.0522 10 8 2.8531 7.8895 -0.9968 11 8 3.5059 7.8456 -3.4091 12 7 5.2306 7.9960 -1.6503 13 6 5.5717 8.2480 -0.2480 14 6 6.2343 8.2035 -2.6970 15 1 5.8003 7.9672 -3.6686 16 6 7.4359 7.2920 -2.4393 17 6 6.6832 9.6420 -2.6844 18 1 6.3320 10.3106 -1.9124 19 6 7.5423 10.1046 -3.6586 20 7 8.1948 11.2321 -3.4783 21 14 7.7734 9.1339 -5.2377 22 1 8.7368 9.8426 -6.1179 23 1 8.2985 7.7827 -4.9158 24 1 6.4685 9.0048 -5.9348 25 6 2.0610 3.5440 -1.1582 26 6 1.6652 2.0685 -1.2503 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9887 0.9682 -0.6002 33 1 3.7028 0.8900 1.1547 34 1 4.9950 2.9220 0.5374 35 1 3.4074 3.3469 1.2229 36 1 4.1088 3.2138 -1.7462 37 1 5.0135 5.1877 -0.4808 38 1 3.3538 5.5758 0.0322 39 1 3.5952 5.3163 -2.8329 40 1 5.3495 9.2862 -0.0010 41 1 4.9859 7.5888 0.3926 42 1 6.6334 8.0567 -0.0922 43 1 8.2252 7.5201 -3.1555 44 1 7.8055 7.4556 -1.4269 45 1 7.1329 6.2510 -2.5516 46 1 8.0190 11.7742 -2.6933 47 1 1.5210 4.0141 -0.3365 48 1 1.8130 4.0474 -2.0927 49 1 2.1943 1.6027 -2.0816 50 1 0.5904 1.9907 -1.4147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514741077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:43 Heat of formation + Delta-G solvation = -83.277149 kcal Electronic energy + Delta-G solvation = -28413.218941 eV Core-core repulsion = 24601.742563 eV Total energy + Delta-G solvation = -3811.476378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.62507 -36.82242 -36.45005 -36.22004 -35.31278 -33.43792 -32.55485 -31.14933 -30.22663 -29.82823 -26.36801 -25.77824 -24.60972 -23.77872 -22.73140 -21.46032 -20.69310 -20.06083 -18.74805 -17.55607 -17.35680 -16.87056 -16.32003 -15.96701 -15.59370 -15.16839 -14.79770 -14.69230 -14.11009 -14.03711 -13.81482 -13.53856 -13.36647 -13.28012 -13.07271 -12.82896 -12.48754 -12.16023 -12.14310 -12.06405 -11.95628 -11.72838 -11.67218 -11.58176 -11.53460 -11.44868 -11.37408 -11.25489 -10.90075 -10.78830 -10.55706 -10.52255 -10.43581 -9.99262 -9.76072 -9.35965 -9.14745 -8.64170 -8.40501 -8.06230 -6.47522 -4.10654 1.10551 3.33836 3.39668 3.47736 3.54828 3.60430 4.02799 4.42833 4.45675 4.45853 4.53304 4.70531 4.83606 4.91537 4.99574 5.03466 5.12838 5.14212 5.20539 5.26027 5.27311 5.38282 5.43737 5.47799 5.51675 5.54624 5.61026 5.67809 5.74666 5.84887 5.89176 5.91347 5.99465 6.04490 6.20134 6.22231 6.35437 6.37639 6.51797 6.57662 6.77412 6.78918 6.92932 7.08999 7.31351 7.51141 7.96884 8.36493 8.89060 9.57775 10.90922 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.002853 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.016852 B = 9813.582021 C = 9990.749363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.058 3.942 5 C -0.111 4.111 6 C -0.094 4.094 7 C 0.126 3.874 8 N -1.133 6.133 9 S 2.779 3.221 10 O -0.992 6.992 11 O -0.976 6.976 12 N -0.984 5.984 13 C 0.110 3.890 14 C 0.245 3.755 15 H 0.047 0.953 16 C -0.161 4.161 17 C -0.604 4.604 18 H 0.064 0.936 19 C 0.034 3.966 20 N -0.902 5.902 21 Si 1.035 2.965 22 H -0.283 1.283 23 H -0.273 1.273 24 H -0.276 1.276 25 C -0.113 4.113 26 C 0.053 3.947 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.411 0.589 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.025 0.975 46 H 0.268 0.732 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.031 0.969 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 -23.213 7.653 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.070 4.070 5 C -0.150 4.150 6 C -0.114 4.114 7 C -0.001 4.001 8 N -0.892 5.892 9 S 2.787 3.213 10 O -0.975 6.975 11 O -0.960 6.960 12 N -0.826 5.826 13 C -0.036 4.036 14 C 0.140 3.860 15 H 0.065 0.935 16 C -0.221 4.221 17 C -0.643 4.643 18 H 0.082 0.918 19 C -0.172 4.172 20 N -0.536 5.536 21 Si 0.863 3.137 22 H -0.209 1.209 23 H -0.199 1.199 24 H -0.202 1.202 25 C -0.151 4.151 26 C -0.075 4.075 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.244 0.756 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.050 0.950 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.901 -22.325 6.597 25.297 hybrid contribution -0.127 -0.798 0.542 0.973 sum -10.028 -23.123 7.139 26.195 Atomic orbital electron populations 1.21815 0.94850 1.01464 1.02634 1.22052 0.96190 0.88896 1.00583 1.61965 1.13884 1.15296 1.35318 1.22060 0.87266 0.97187 1.00521 1.21598 1.01046 0.94459 0.97874 1.21401 0.96767 0.94516 0.98695 1.21257 1.00742 0.92504 0.85558 1.56211 1.90059 1.27395 1.15573 1.01985 0.73474 0.72663 0.73135 1.93546 1.64674 1.80951 1.58315 1.93608 1.85427 1.81318 1.35661 1.57473 1.31087 1.80161 1.13889 1.21169 1.01559 1.00553 0.80316 1.18973 0.84669 0.97030 0.85288 0.93508 1.22543 1.00477 0.96895 1.02137 1.22166 1.32693 0.94293 1.15160 0.91812 1.25695 0.92071 0.98098 1.01377 1.70858 1.36111 1.14959 1.31659 0.84206 0.77325 0.75777 0.76392 1.20864 1.19939 1.20175 1.21665 0.95358 0.95251 1.02857 1.22156 1.00914 0.94669 0.89743 0.91755 0.92611 0.92405 0.95135 0.90875 0.94975 0.90706 0.90990 0.90543 0.90745 0.91762 0.90504 0.75634 0.93150 0.93130 0.90989 0.91711 0.93009 0.95635 0.92164 0.90612 0.91123 0.95038 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.84 37.16 0.37 -0.58 16 2 C 0.05 0.35 5.68 -3.82 -0.02 0.33 16 3 N -0.54 -4.49 4.66 -234.67 -1.09 -5.58 16 4 C 0.06 0.44 5.46 -3.84 -0.02 0.42 16 5 C -0.11 -0.88 5.38 -26.66 -0.14 -1.03 16 6 C -0.09 -0.85 2.28 -90.50 -0.21 -1.05 16 7 C 0.13 1.40 5.64 -4.04 -0.02 1.38 16 8 N -1.13 -15.25 5.62 -10.60 -0.06 -15.31 16 9 S 2.78 52.46 6.09 -107.50 -0.66 51.81 16 10 O -0.99 -20.23 16.68 -57.17 -0.95 -21.18 16 11 O -0.98 -22.01 16.70 -57.17 -0.95 -22.97 16 12 N -0.98 -19.75 3.12 -115.85 -0.36 -20.11 16 13 C 0.11 1.93 9.48 59.85 0.57 2.50 16 14 C 0.25 5.67 2.21 -69.08 -0.15 5.52 16 15 H 0.05 1.14 5.57 -51.93 -0.29 0.85 16 16 C -0.16 -3.26 8.96 37.16 0.33 -2.93 16 17 C -0.60 -16.62 8.68 -34.44 -0.30 -16.92 16 18 H 0.06 1.89 7.75 -52.49 -0.41 1.48 16 19 C 0.03 0.96 5.30 -17.82 -0.09 0.86 16 20 N -0.90 -27.25 13.70 55.43 0.76 -26.49 16 21 Si 1.04 24.83 26.29 -169.99 -4.47 20.36 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -5.84 5.74 56.52 0.32 -5.51 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.11 -1.05 5.24 -26.65 -0.14 -1.19 16 26 C 0.05 0.44 5.29 -3.83 -0.02 0.42 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.36 6.43 -51.93 -0.33 0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 31 H 0.07 0.46 7.99 -51.93 -0.41 0.05 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.51 8.02 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.90 7.75 -51.93 -0.40 0.49 16 39 H 0.41 4.76 8.39 -34.47 -0.29 4.47 16 40 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 42 H 0.07 1.20 6.33 -51.93 -0.33 0.87 16 43 H 0.06 1.38 4.85 -51.93 -0.25 1.13 16 44 H 0.05 0.99 6.45 -51.93 -0.33 0.66 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.66 7.62 -51.93 -0.40 0.26 16 49 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.08 0.62 6.21 -51.93 -0.32 0.30 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -33.51 389.73 -10.66 -44.17 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.89 Total: 1.69 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 0.15 Total: -12.27 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.76 Total: -67.49 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.91 Total: -44.15 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.47 Total: 20.36 kcal Atomic # 16 Polarization: 52.46 SS G_CDS: -0.66 Total: 51.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.51 -10.66 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514741077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.108 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds