Wall clock time and date at job start Tue Mar 31 2020 17:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47049 * 2 1 4 4 C 1.46843 * 110.99732 * 169.99900 * 3 2 1 5 5 C 1.53038 * 109.52370 * 185.83929 * 4 3 2 6 6 C 1.53109 * 109.27684 * 300.82119 * 5 4 3 7 7 C 1.53002 * 109.52155 * 177.56073 * 6 5 4 8 8 N 1.46509 * 109.47091 * 175.12794 * 7 6 5 9 9 S 1.65598 * 119.99878 * 164.99721 * 8 7 6 10 10 O 1.42098 * 106.40577 * 311.46044 * 9 8 7 11 11 O 1.42101 * 106.40330 * 178.53780 * 9 8 7 12 12 N 1.65606 * 107.21806 * 64.99978 * 9 8 7 13 13 C 1.46502 * 120.00061 * 270.00131 * 12 9 8 14 14 C 1.46501 * 119.99949 * 89.99829 * 12 9 8 15 15 H 1.08999 * 109.47164 * 0.02562 * 14 12 9 16 16 C 1.53004 * 109.47066 * 239.99956 * 14 12 9 17 17 C 1.50697 * 109.47071 * 120.00037 * 14 12 9 18 18 H 1.07999 * 120.00028 * 5.62061 * 17 14 12 19 19 C 1.37877 * 119.99883 * 185.61387 * 17 14 12 20 20 N 1.31512 * 119.99916 * 196.97349 * 19 17 14 21 21 Si 1.86798 * 120.00059 * 17.25803 * 19 17 14 22 22 H 1.48500 * 109.47180 * 179.71899 * 21 19 17 23 23 H 1.48497 * 109.47063 * 299.72121 * 21 19 17 24 24 H 1.48504 * 109.46829 * 59.72088 * 21 19 17 25 25 C 1.53123 * 109.21553 * 57.62344 * 6 5 4 26 26 C 1.46843 * 111.00121 * 294.20674 * 3 2 1 27 27 H 1.09001 * 109.47461 * 300.00165 * 1 2 3 28 28 H 1.08999 * 109.46756 * 59.99979 * 1 2 3 29 29 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46850 * 239.99944 * 2 1 3 31 31 H 1.08999 * 109.46756 * 120.00021 * 2 1 3 32 32 H 1.08999 * 109.46201 * 65.82168 * 4 3 2 33 33 H 1.09003 * 109.46624 * 305.85521 * 4 3 2 34 34 H 1.08998 * 109.50478 * 180.87799 * 5 4 3 35 35 H 1.09002 * 109.50133 * 60.76338 * 5 4 3 36 36 H 1.08998 * 109.52695 * 297.68293 * 6 5 4 37 37 H 1.09001 * 109.47393 * 55.12707 * 7 6 5 38 38 H 1.09002 * 109.47242 * 295.12301 * 7 6 5 39 39 H 0.96997 * 120.00106 * 344.99442 * 8 7 6 40 40 H 1.09001 * 109.46622 * 269.99853 * 13 12 9 41 41 H 1.08999 * 109.47047 * 29.99454 * 13 12 9 42 42 H 1.08998 * 109.47596 * 149.99845 * 13 12 9 43 43 H 1.08995 * 109.46948 * 185.88973 * 16 14 12 44 44 H 1.09001 * 109.47142 * 305.89271 * 16 14 12 45 45 H 1.09007 * 109.46976 * 65.88597 * 16 14 12 46 46 H 0.97003 * 120.00480 * 355.09525 * 20 19 17 47 47 H 1.08994 * 109.50202 * 62.31642 * 25 6 5 48 48 H 1.09004 * 109.50309 * 182.43645 * 25 6 5 49 49 H 1.08995 * 109.46608 * 294.18532 * 26 3 2 50 50 H 1.09002 * 109.46334 * 54.16102 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 0.2381 5 6 3.9175 2.8874 0.3762 6 6 3.5677 3.6481 -0.9056 7 6 3.9596 5.1189 -0.7504 8 7 3.7325 5.8211 -2.0161 9 16 3.7103 7.4765 -2.0522 10 8 2.8531 7.8895 -0.9968 11 8 3.5059 7.8456 -3.4091 12 7 5.2306 7.9960 -1.6503 13 6 5.5717 8.2480 -0.2480 14 6 6.2343 8.2035 -2.6970 15 1 5.8003 7.9672 -3.6686 16 6 7.4359 7.2920 -2.4393 17 6 6.6832 9.6420 -2.6844 18 1 6.3320 10.3106 -1.9124 19 6 7.5423 10.1046 -3.6586 20 7 8.1948 11.2321 -3.4783 21 14 7.7734 9.1339 -5.2377 22 1 8.7368 9.8426 -6.1179 23 1 8.2985 7.7827 -4.9158 24 1 6.4685 9.0048 -5.9348 25 6 2.0610 3.5440 -1.1582 26 6 1.6652 2.0685 -1.2503 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9887 0.9682 -0.6002 33 1 3.7028 0.8900 1.1547 34 1 4.9950 2.9220 0.5374 35 1 3.4074 3.3469 1.2229 36 1 4.1088 3.2138 -1.7462 37 1 5.0135 5.1877 -0.4808 38 1 3.3538 5.5758 0.0322 39 1 3.5952 5.3163 -2.8329 40 1 5.3495 9.2862 -0.0010 41 1 4.9859 7.5888 0.3926 42 1 6.6334 8.0567 -0.0922 43 1 8.2252 7.5201 -3.1555 44 1 7.8055 7.4556 -1.4269 45 1 7.1329 6.2510 -2.5516 46 1 8.0190 11.7742 -2.6933 47 1 1.5210 4.0141 -0.3365 48 1 1.8130 4.0474 -2.0927 49 1 2.1943 1.6027 -2.0816 50 1 0.5904 1.9907 -1.4147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514741077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:42 Heat of formation + Delta-G solvation = -109.403340 kcal Electronic energy + Delta-G solvation = -28414.351857 eV Core-core repulsion = 24601.742563 eV Total energy + Delta-G solvation = -3812.609295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.27629 -38.40816 -38.06249 -37.16127 -36.93533 -34.61761 -34.25469 -31.79200 -31.57453 -30.87469 -27.35446 -27.10674 -26.57434 -24.43422 -23.40871 -22.48654 -22.05184 -20.84589 -20.13494 -19.56590 -18.81415 -18.38150 -17.37883 -16.94875 -16.47196 -16.20108 -15.77621 -15.63937 -15.35812 -15.31933 -15.04802 -14.74514 -14.62651 -14.40550 -14.09787 -13.95958 -13.70741 -13.61239 -13.42242 -13.33512 -13.27927 -13.18678 -12.91544 -12.88293 -12.56631 -12.54376 -12.46180 -12.20019 -12.08544 -11.93822 -11.79004 -11.57017 -11.55156 -11.26671 -11.19057 -11.13874 -10.46903 -10.40157 -9.84749 -9.22646 -8.69657 -6.34911 -0.39035 1.44544 1.57536 1.71719 2.00048 2.48052 2.59348 2.98630 3.08586 3.36183 3.71378 3.81959 3.86969 3.95818 4.13993 4.28610 4.32095 4.39116 4.44033 4.50426 4.51723 4.61026 4.64559 4.65863 4.70674 4.77064 4.78427 4.81000 4.85518 4.92570 4.94549 4.99431 5.01542 5.06320 5.12489 5.16009 5.23113 5.30217 5.33803 5.37575 5.52327 5.61312 5.76513 5.99681 6.06325 6.15327 6.19654 6.22137 6.62494 7.42149 8.65620 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.002853 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.016852 B = 9813.582021 C = 9990.749363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.551 5.551 4 C 0.057 3.943 5 C -0.108 4.108 6 C -0.086 4.086 7 C 0.119 3.881 8 N -1.113 6.113 9 S 2.795 3.205 10 O -1.011 7.011 11 O -1.016 7.016 12 N -0.993 5.993 13 C 0.106 3.894 14 C 0.244 3.756 15 H 0.041 0.959 16 C -0.155 4.155 17 C -0.605 4.605 18 H 0.025 0.975 19 C -0.018 4.018 20 N -0.935 5.935 21 Si 1.066 2.934 22 H -0.287 1.287 23 H -0.224 1.224 24 H -0.275 1.275 25 C -0.115 4.115 26 C 0.056 3.944 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.423 0.577 40 H 0.026 0.974 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.252 0.748 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.034 0.966 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.568 -26.900 7.797 29.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.277 5.277 4 C -0.070 4.070 5 C -0.147 4.147 6 C -0.106 4.106 7 C -0.007 4.007 8 N -0.877 5.877 9 S 2.804 3.196 10 O -0.994 6.994 11 O -1.001 7.001 12 N -0.833 5.833 13 C -0.040 4.040 14 C 0.138 3.862 15 H 0.059 0.941 16 C -0.214 4.214 17 C -0.644 4.644 18 H 0.043 0.957 19 C -0.217 4.217 20 N -0.572 5.572 21 Si 0.887 3.113 22 H -0.213 1.213 23 H -0.147 1.147 24 H -0.200 1.200 25 C -0.153 4.153 26 C -0.072 4.072 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.682 -26.027 6.775 28.584 hybrid contribution -0.330 0.347 0.621 0.785 sum -10.012 -25.680 7.396 28.538 Atomic orbital electron populations 1.21793 0.94592 1.02099 1.02016 1.22097 0.96415 0.88280 1.00981 1.61984 1.14463 1.16079 1.35183 1.22088 0.86852 0.97023 1.01063 1.21588 1.01872 0.94378 0.96826 1.21362 0.96456 0.93062 0.99756 1.21538 1.01749 0.93427 0.83982 1.55688 1.89557 1.25199 1.17279 1.01263 0.72867 0.73734 0.71771 1.93521 1.65061 1.82081 1.58711 1.93547 1.85895 1.82819 1.37793 1.57406 1.30655 1.81086 1.14201 1.21323 1.02882 1.00139 0.79659 1.18810 0.86511 0.94743 0.86121 0.94124 1.22388 0.98365 0.98335 1.02276 1.22415 1.31879 0.96578 1.13557 0.95661 1.27054 0.91984 0.98311 1.04302 1.70987 1.38312 1.16389 1.31466 0.83861 0.77496 0.77168 0.72742 1.21254 1.14721 1.20049 1.21667 0.95632 0.95844 1.02181 1.22099 1.01044 0.94044 0.90001 0.92553 0.92990 0.91187 0.94973 0.90174 0.94763 0.89791 0.89597 0.91161 0.89821 0.90152 0.91033 0.74115 0.95518 0.89554 0.90060 0.92686 0.92343 0.91615 0.93898 0.91896 0.91416 0.94824 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.84 71.98 0.71 -0.91 16 2 C 0.05 0.59 5.68 86.31 0.49 1.08 16 3 N -0.55 -7.97 4.66 -896.37 -4.18 -12.15 16 4 C 0.06 0.71 5.46 86.33 0.47 1.19 16 5 C -0.11 -1.38 5.38 30.64 0.16 -1.21 16 6 C -0.09 -1.30 2.28 -10.72 -0.02 -1.32 16 7 C 0.12 2.27 5.64 86.38 0.49 2.76 16 8 N -1.11 -27.07 5.62 -187.46 -1.05 -28.13 16 9 S 2.79 102.22 6.09 -56.49 -0.34 101.88 16 10 O -1.01 -40.44 16.68 -128.00 -2.14 -42.57 16 11 O -1.02 -45.35 16.70 -128.00 -2.14 -47.49 16 12 N -0.99 -38.59 3.12 -520.44 -1.62 -40.21 16 13 C 0.11 3.57 9.48 127.77 1.21 4.78 16 14 C 0.24 10.94 2.21 44.25 0.10 11.04 16 15 H 0.04 1.90 5.57 -2.39 -0.01 1.89 16 16 C -0.15 -5.72 8.96 71.98 0.64 -5.08 16 17 C -0.60 -33.83 8.68 25.60 0.22 -33.61 16 18 H 0.03 1.56 7.75 -2.91 -0.02 1.54 16 19 C -0.02 -1.01 5.30 84.65 0.45 -0.56 16 20 N -0.94 -58.25 13.70 21.45 0.29 -57.95 16 21 Si 1.07 49.04 26.29 68.60 1.80 50.84 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.22 -8.52 5.74 99.48 0.57 -7.95 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.12 -1.92 5.24 30.65 0.16 -1.76 16 26 C 0.06 0.83 5.29 86.33 0.46 1.29 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.60 6.43 -2.39 -0.02 0.59 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.03 0.37 8.12 -2.39 -0.02 0.35 16 31 H 0.08 0.83 7.99 -2.39 -0.02 0.81 16 32 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.08 0.90 8.02 -2.39 -0.02 0.88 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.49 7.75 -2.39 -0.02 1.47 16 39 H 0.42 8.60 8.39 -96.75 -0.81 7.79 16 40 H 0.03 1.00 8.09 -2.39 -0.02 0.98 16 41 H 0.09 2.27 7.79 -2.39 -0.02 2.25 16 42 H 0.08 2.57 6.33 -2.39 -0.02 2.56 16 43 H 0.05 2.14 4.85 -2.39 -0.01 2.13 16 44 H 0.06 2.07 6.45 -2.39 -0.02 2.05 16 45 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.07 1.14 7.62 -2.38 -0.02 1.12 16 49 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.08 1.13 6.21 -2.39 -0.01 1.12 16 Total: -1.00 -74.35 389.73 -3.91 -78.26 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.07 Total: 19.85 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 5.54 Total: -22.32 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -6.56 Total: -138.44 kcal Atomic # 8 Polarization: -85.79 SS G_CDS: -4.27 Total: -90.06 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.80 Total: 50.84 kcal Atomic # 16 Polarization: 102.22 SS G_CDS: -0.34 Total: 101.88 kcal Total: -74.35 -3.91 -78.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514741077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.145 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds