Wall clock time and date at job start Tue Mar 31 2020 17:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47250 * 2 1 4 4 C 1.46845 * 111.00199 * 169.99734 * 3 2 1 5 5 C 1.53033 * 109.52612 * 185.83947 * 4 3 2 6 6 C 1.53119 * 109.27984 * 300.82266 * 5 4 3 7 7 C 1.53000 * 109.52569 * 177.55820 * 6 5 4 8 8 N 1.46501 * 109.47266 * 175.12159 * 7 6 5 9 9 S 1.65598 * 120.00034 * 164.99831 * 8 7 6 10 10 O 1.42100 * 106.40183 * 311.46236 * 9 8 7 11 11 O 1.42101 * 106.40217 * 178.54484 * 9 8 7 12 12 N 1.65597 * 107.21541 * 65.00515 * 9 8 7 13 13 C 1.46503 * 119.99956 * 269.99520 * 12 9 8 14 14 C 1.46497 * 120.00227 * 89.99985 * 12 9 8 15 15 H 1.09003 * 109.46733 * 0.02562 * 14 12 9 16 16 C 1.53000 * 109.47145 * 119.99787 * 14 12 9 17 17 C 1.50694 * 109.47115 * 239.99861 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.53113 * 109.21382 * 57.61631 * 6 5 4 26 26 C 1.46847 * 111.00012 * 294.20724 * 3 2 1 27 27 H 1.09003 * 109.47413 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47513 * 300.00364 * 1 2 3 29 29 H 1.09008 * 109.46475 * 60.00196 * 1 2 3 30 30 H 1.09004 * 109.47440 * 239.99633 * 2 1 3 31 31 H 1.09006 * 109.46956 * 119.99971 * 2 1 3 32 32 H 1.09001 * 109.46439 * 65.82006 * 4 3 2 33 33 H 1.09000 * 109.46290 * 305.85634 * 4 3 2 34 34 H 1.09003 * 109.50627 * 180.87733 * 5 4 3 35 35 H 1.09000 * 109.50371 * 60.75769 * 5 4 3 36 36 H 1.09001 * 109.51907 * 297.68556 * 6 5 4 37 37 H 1.09001 * 109.46843 * 55.12495 * 7 6 5 38 38 H 1.08992 * 109.46988 * 295.12383 * 7 6 5 39 39 H 0.96998 * 119.99681 * 345.00413 * 8 7 6 40 40 H 1.08994 * 109.47665 * 270.00896 * 13 12 9 41 41 H 1.09008 * 109.46786 * 30.00504 * 13 12 9 42 42 H 1.08997 * 109.47360 * 149.99945 * 13 12 9 43 43 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 44 44 H 1.09007 * 109.47356 * 300.00099 * 16 14 12 45 45 H 1.09000 * 109.47156 * 59.99824 * 16 14 12 46 46 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.49962 * 62.32148 * 25 6 5 48 48 H 1.09004 * 109.50487 * 182.43830 * 25 6 5 49 49 H 1.08997 * 109.46251 * 294.17708 * 26 3 2 50 50 H 1.08997 * 109.46391 * 54.15513 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4680 1.4311 0.2381 5 6 3.9175 2.8874 0.3763 6 6 3.5676 3.6482 -0.9057 7 6 3.9595 5.1190 -0.7504 8 7 3.7326 5.8211 -2.0161 9 16 3.7103 7.4765 -2.0523 10 8 2.8530 7.8894 -0.9969 11 8 3.5059 7.8455 -3.4092 12 7 5.2305 7.9960 -1.6504 13 6 5.5715 8.2482 -0.2481 14 6 6.2343 8.2035 -2.6970 15 1 5.8003 7.9671 -3.6686 16 6 6.6900 9.6639 -2.6843 17 6 7.4177 7.3057 -2.4431 18 1 7.4220 6.6468 -1.5874 19 6 8.4956 7.3263 -3.3027 20 7 8.4907 8.1290 -4.3444 21 14 9.9629 6.2140 -2.9874 22 1 10.9478 6.9241 -2.1325 23 1 9.5090 4.9791 -2.2988 24 1 10.5983 5.8545 -4.2807 25 6 2.0611 3.5439 -1.1583 26 6 1.6651 2.0685 -1.2504 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9888 0.9682 -0.6001 33 1 3.7027 0.8901 1.1548 34 1 4.9950 2.9220 0.5375 35 1 3.4073 3.3470 1.2228 36 1 4.1088 3.2138 -1.7462 37 1 5.0134 5.1877 -0.4808 38 1 3.3537 5.5757 0.0321 39 1 3.5952 5.3162 -2.8329 40 1 5.3493 9.2862 -0.0010 41 1 4.9857 7.5888 0.3925 42 1 6.6332 8.0568 -0.0922 43 1 7.4365 9.8185 -3.4633 44 1 5.8340 10.3134 -2.8679 45 1 7.1238 9.9008 -1.7127 46 1 9.2492 8.1438 -4.9489 47 1 1.5209 4.0141 -0.3365 48 1 1.8131 4.0473 -2.0928 49 1 2.1943 1.6026 -2.0816 50 1 0.5904 1.9906 -1.4148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514741078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:46 Heat of formation + Delta-G solvation = -87.125486 kcal Electronic energy + Delta-G solvation = -28514.551740 eV Core-core repulsion = 24702.908486 eV Total energy + Delta-G solvation = -3811.643254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.48367 -36.69423 -36.21938 -36.03813 -35.21273 -33.26959 -32.60178 -31.01379 -30.09617 -29.07665 -26.20373 -25.46932 -25.18384 -23.64287 -22.58374 -21.32866 -20.76802 -19.93363 -18.69782 -17.18767 -16.80840 -16.37768 -16.20985 -15.78214 -15.46437 -15.11249 -14.75135 -14.56536 -14.29043 -13.93906 -13.61700 -13.41205 -13.22086 -13.17420 -12.80156 -12.62897 -12.35376 -12.04906 -11.96725 -11.86088 -11.75376 -11.54972 -11.50085 -11.35257 -11.31278 -11.26655 -11.21803 -10.98128 -10.86343 -10.69787 -10.44095 -10.41199 -10.36591 -10.21988 -10.06996 -9.34297 -9.05434 -8.52946 -8.49509 -7.95314 -6.10450 -4.18842 1.30308 3.22678 3.30246 3.31297 3.54780 3.66298 4.18094 4.33964 4.58753 4.59503 4.68624 4.82836 4.94102 5.06277 5.13594 5.17238 5.20120 5.22208 5.28012 5.40520 5.44125 5.50335 5.60119 5.62358 5.65238 5.70499 5.72486 5.83296 5.89158 5.99225 6.04494 6.06480 6.18207 6.21930 6.33410 6.41822 6.67014 6.88338 6.88628 6.89156 6.90361 7.12197 7.27475 7.54652 7.62893 7.78337 8.05018 8.25628 8.84052 9.47267 10.94587 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003477 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.981212 B = 8051.760941 C = 9371.479537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.057 3.943 5 C -0.111 4.111 6 C -0.094 4.094 7 C 0.128 3.872 8 N -1.127 6.127 9 S 2.783 3.217 10 O -0.999 6.999 11 O -0.984 6.984 12 N -0.990 5.990 13 C 0.106 3.894 14 C 0.268 3.732 15 H 0.058 0.942 16 C -0.145 4.145 17 C -0.524 4.524 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.897 3.103 22 H -0.281 1.281 23 H -0.275 1.275 24 H -0.287 1.287 25 C -0.112 4.112 26 C 0.053 3.947 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.042 0.958 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.012 0.988 45 H 0.032 0.968 46 H 0.263 0.737 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.032 0.968 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.521 -13.395 8.794 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.265 5.265 4 C -0.070 4.070 5 C -0.150 4.150 6 C -0.114 4.114 7 C 0.002 3.998 8 N -0.886 5.886 9 S 2.792 3.208 10 O -0.983 6.983 11 O -0.968 6.968 12 N -0.833 5.833 13 C -0.041 4.041 14 C 0.165 3.835 15 H 0.076 0.924 16 C -0.204 4.204 17 C -0.564 4.564 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.525 5.525 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.200 1.200 24 H -0.212 1.212 25 C -0.150 4.150 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.244 0.756 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.031 0.969 45 H 0.051 0.949 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.050 0.950 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.371 -12.433 8.986 19.095 hybrid contribution 1.681 -1.522 -0.842 2.419 sum -9.689 -13.955 8.144 18.840 Atomic orbital electron populations 1.21811 0.94914 1.01391 1.02604 1.22050 0.96128 0.89014 1.00560 1.61973 1.13971 1.15182 1.35333 1.22063 0.87180 0.97312 1.00485 1.21595 1.01134 0.94339 0.97885 1.21397 0.96554 0.94752 0.98715 1.21218 1.00935 0.92281 0.85405 1.55995 1.89917 1.27127 1.15550 1.01750 0.73391 0.72801 0.72847 1.93537 1.65049 1.81223 1.58445 1.93589 1.85750 1.81666 1.35779 1.57696 1.31080 1.80501 1.14036 1.21199 1.02498 0.99515 0.80849 1.18711 0.85941 0.93797 0.85035 0.92399 1.22055 1.00020 0.96601 1.01766 1.21371 1.01573 1.22416 1.11007 0.91934 1.24932 0.98367 0.95641 0.94963 1.69885 1.31175 1.37393 1.14057 0.86535 0.82617 0.80828 0.77575 1.20672 1.19984 1.21236 1.21658 0.95513 0.95118 1.02744 1.22160 1.00785 0.94793 0.89762 0.92467 0.91790 0.92613 0.95152 0.90925 0.94929 0.90786 0.90911 0.90657 0.90620 0.91486 0.90827 0.75593 0.93916 0.93262 0.90248 0.88952 0.96899 0.94892 0.92658 0.90736 0.91150 0.95010 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.84 37.16 0.37 -0.70 16 2 C 0.05 0.40 5.68 -3.83 -0.02 0.38 16 3 N -0.54 -5.15 4.66 -234.67 -1.09 -6.24 16 4 C 0.06 0.53 5.46 -3.84 -0.02 0.51 16 5 C -0.11 -1.08 5.38 -26.65 -0.14 -1.23 16 6 C -0.09 -1.04 2.28 -90.50 -0.21 -1.25 16 7 C 0.13 1.69 5.64 -4.04 -0.02 1.67 16 8 N -1.13 -17.39 5.62 -10.61 -0.06 -17.45 16 9 S 2.78 54.09 6.09 -107.50 -0.66 53.43 16 10 O -1.00 -20.36 16.68 -57.17 -0.95 -21.31 16 11 O -0.98 -22.43 16.70 -57.17 -0.95 -23.38 16 12 N -0.99 -20.31 3.12 -115.85 -0.36 -20.67 16 13 C 0.11 1.86 9.28 59.85 0.56 2.42 16 14 C 0.27 6.51 2.62 -69.09 -0.18 6.33 16 15 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 16 C -0.14 -3.46 8.97 37.16 0.33 -3.12 16 17 C -0.52 -13.25 7.99 -34.44 -0.28 -13.52 16 18 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 19 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 20 N -0.89 -24.27 11.32 55.43 0.63 -23.64 16 21 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.11 -1.20 5.24 -26.65 -0.14 -1.34 16 26 C 0.05 0.51 5.29 -3.83 -0.02 0.49 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.41 6.43 -51.92 -0.33 0.07 16 30 H 0.03 0.25 8.12 -51.93 -0.42 -0.18 16 31 H 0.07 0.53 7.99 -51.93 -0.41 0.12 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.97 7.75 -51.93 -0.40 0.56 16 39 H 0.41 5.75 8.39 -34.47 -0.29 5.46 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.74 7.79 -51.92 -0.40 0.34 16 42 H 0.08 1.41 7.02 -51.93 -0.36 1.04 16 43 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 46 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.75 7.62 -51.93 -0.40 0.36 16 49 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.69 6.21 -51.93 -0.32 0.37 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -30.76 395.23 -11.39 -42.15 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -9.01 Total: 3.81 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 0.13 Total: -7.80 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.89 Total: -68.01 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.91 Total: -44.70 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.66 Total: 53.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.76 -11.39 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514741078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.971 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds