Wall clock time and date at job start Tue Mar 31 2020 17:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47250 * 2 1 4 4 C 1.46845 * 111.00199 * 169.99734 * 3 2 1 5 5 C 1.53033 * 109.52612 * 185.83947 * 4 3 2 6 6 C 1.53119 * 109.27984 * 300.82266 * 5 4 3 7 7 C 1.53000 * 109.52569 * 177.55820 * 6 5 4 8 8 N 1.46501 * 109.47266 * 175.12159 * 7 6 5 9 9 S 1.65598 * 120.00034 * 164.99831 * 8 7 6 10 10 O 1.42100 * 106.40183 * 311.46236 * 9 8 7 11 11 O 1.42101 * 106.40217 * 178.54484 * 9 8 7 12 12 N 1.65597 * 107.21541 * 65.00515 * 9 8 7 13 13 C 1.46503 * 119.99956 * 269.99520 * 12 9 8 14 14 C 1.46497 * 120.00227 * 89.99985 * 12 9 8 15 15 H 1.09003 * 109.46733 * 0.02562 * 14 12 9 16 16 C 1.53000 * 109.47145 * 119.99787 * 14 12 9 17 17 C 1.50694 * 109.47115 * 239.99861 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.53113 * 109.21382 * 57.61631 * 6 5 4 26 26 C 1.46847 * 111.00012 * 294.20724 * 3 2 1 27 27 H 1.09003 * 109.47413 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47513 * 300.00364 * 1 2 3 29 29 H 1.09008 * 109.46475 * 60.00196 * 1 2 3 30 30 H 1.09004 * 109.47440 * 239.99633 * 2 1 3 31 31 H 1.09006 * 109.46956 * 119.99971 * 2 1 3 32 32 H 1.09001 * 109.46439 * 65.82006 * 4 3 2 33 33 H 1.09000 * 109.46290 * 305.85634 * 4 3 2 34 34 H 1.09003 * 109.50627 * 180.87733 * 5 4 3 35 35 H 1.09000 * 109.50371 * 60.75769 * 5 4 3 36 36 H 1.09001 * 109.51907 * 297.68556 * 6 5 4 37 37 H 1.09001 * 109.46843 * 55.12495 * 7 6 5 38 38 H 1.08992 * 109.46988 * 295.12383 * 7 6 5 39 39 H 0.96998 * 119.99681 * 345.00413 * 8 7 6 40 40 H 1.08994 * 109.47665 * 270.00896 * 13 12 9 41 41 H 1.09008 * 109.46786 * 30.00504 * 13 12 9 42 42 H 1.08997 * 109.47360 * 149.99945 * 13 12 9 43 43 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 44 44 H 1.09007 * 109.47356 * 300.00099 * 16 14 12 45 45 H 1.09000 * 109.47156 * 59.99824 * 16 14 12 46 46 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.49962 * 62.32148 * 25 6 5 48 48 H 1.09004 * 109.50487 * 182.43830 * 25 6 5 49 49 H 1.08997 * 109.46251 * 294.17708 * 26 3 2 50 50 H 1.08997 * 109.46391 * 54.15513 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4680 1.4311 0.2381 5 6 3.9175 2.8874 0.3763 6 6 3.5676 3.6482 -0.9057 7 6 3.9595 5.1190 -0.7504 8 7 3.7326 5.8211 -2.0161 9 16 3.7103 7.4765 -2.0523 10 8 2.8530 7.8894 -0.9969 11 8 3.5059 7.8455 -3.4092 12 7 5.2305 7.9960 -1.6504 13 6 5.5715 8.2482 -0.2481 14 6 6.2343 8.2035 -2.6970 15 1 5.8003 7.9671 -3.6686 16 6 6.6900 9.6639 -2.6843 17 6 7.4177 7.3057 -2.4431 18 1 7.4220 6.6468 -1.5874 19 6 8.4956 7.3263 -3.3027 20 7 8.4907 8.1290 -4.3444 21 14 9.9629 6.2140 -2.9874 22 1 10.9478 6.9241 -2.1325 23 1 9.5090 4.9791 -2.2988 24 1 10.5983 5.8545 -4.2807 25 6 2.0611 3.5439 -1.1583 26 6 1.6651 2.0685 -1.2504 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9888 0.9682 -0.6001 33 1 3.7027 0.8901 1.1548 34 1 4.9950 2.9220 0.5375 35 1 3.4073 3.3470 1.2228 36 1 4.1088 3.2138 -1.7462 37 1 5.0134 5.1877 -0.4808 38 1 3.3537 5.5757 0.0321 39 1 3.5952 5.3162 -2.8329 40 1 5.3493 9.2862 -0.0010 41 1 4.9857 7.5888 0.3925 42 1 6.6332 8.0568 -0.0922 43 1 7.4365 9.8185 -3.4633 44 1 5.8340 10.3134 -2.8679 45 1 7.1238 9.9008 -1.7127 46 1 9.2492 8.1438 -4.9489 47 1 1.5209 4.0141 -0.3365 48 1 1.8131 4.0473 -2.0928 49 1 2.1943 1.6026 -2.0816 50 1 0.5904 1.9906 -1.4148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514741078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:45 Heat of formation + Delta-G solvation = -108.788372 kcal Electronic energy + Delta-G solvation = -28515.491114 eV Core-core repulsion = 24702.908486 eV Total energy + Delta-G solvation = -3812.582628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.27476 -38.31987 -37.87792 -37.12331 -36.87767 -34.49189 -34.22419 -31.79660 -30.91272 -30.86042 -27.27535 -27.13390 -26.91514 -24.42986 -23.40068 -22.61055 -22.06032 -20.85976 -20.12956 -18.73472 -18.36048 -18.23250 -17.34381 -16.97422 -16.67601 -16.20563 -15.98937 -15.58920 -15.33529 -15.11950 -14.87594 -14.64125 -14.57231 -14.30178 -14.05354 -13.72747 -13.61464 -13.41893 -13.31360 -13.19431 -13.11208 -12.97777 -12.87625 -12.72746 -12.64245 -12.56023 -12.52659 -12.20548 -12.11925 -12.09111 -11.95948 -11.85904 -11.57389 -11.27365 -11.19982 -11.14247 -10.48628 -10.34764 -9.64475 -9.24285 -8.07538 -6.22266 -0.25315 1.46601 1.48094 1.56936 2.04893 2.47027 2.65761 2.97743 3.21073 3.45356 3.72670 3.82803 3.88125 4.09601 4.15141 4.29232 4.33612 4.38845 4.47178 4.52224 4.61584 4.65174 4.72014 4.72566 4.79263 4.81483 4.86696 4.91608 4.97654 4.99217 5.01838 5.04183 5.13524 5.16397 5.16962 5.22275 5.28426 5.30559 5.38091 5.51878 5.62595 5.69267 5.86269 6.07711 6.18236 6.19963 6.21195 6.30868 6.87303 7.47369 8.97142 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003477 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.981212 B = 8051.760941 C = 9371.479537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.548 5.548 4 C 0.058 3.942 5 C -0.108 4.108 6 C -0.088 4.088 7 C 0.123 3.877 8 N -1.117 6.117 9 S 2.799 3.201 10 O -1.007 7.007 11 O -1.021 7.021 12 N -0.997 5.997 13 C 0.099 3.901 14 C 0.273 3.727 15 H 0.024 0.976 16 C -0.139 4.139 17 C -0.526 4.526 18 H 0.072 0.928 19 C 0.014 3.986 20 N -0.920 5.920 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.264 1.264 24 H -0.291 1.291 25 C -0.112 4.112 26 C 0.056 3.944 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.418 0.582 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.044 0.956 46 H 0.262 0.738 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.029 0.971 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.421 -15.215 10.522 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.274 5.274 4 C -0.070 4.070 5 C -0.146 4.146 6 C -0.109 4.109 7 C -0.002 4.002 8 N -0.879 5.879 9 S 2.808 3.192 10 O -0.990 6.990 11 O -1.006 7.006 12 N -0.838 5.838 13 C -0.047 4.047 14 C 0.169 3.831 15 H 0.042 0.958 16 C -0.199 4.199 17 C -0.565 4.565 18 H 0.090 0.910 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.785 3.215 22 H -0.202 1.202 23 H -0.188 1.188 24 H -0.217 1.217 25 C -0.150 4.150 26 C -0.072 4.072 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.253 0.747 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.048 0.952 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.283 -14.254 10.740 21.115 hybrid contribution 1.577 -0.973 -1.342 2.288 sum -9.706 -15.227 9.398 20.357 Atomic orbital electron populations 1.21786 0.94348 1.02154 1.02105 1.22114 0.96601 0.88212 1.00940 1.62000 1.14203 1.16121 1.35059 1.22076 0.87008 0.96903 1.00980 1.21578 1.01609 0.94522 0.96899 1.21356 0.96712 0.93272 0.99515 1.21436 1.01194 0.93442 0.84171 1.55680 1.89549 1.25722 1.16968 1.01121 0.72933 0.73492 0.71686 1.93521 1.65094 1.81991 1.58431 1.93535 1.86219 1.82896 1.37927 1.57586 1.30411 1.81279 1.14565 1.21410 1.02994 1.00766 0.79508 1.18382 0.86286 0.93772 0.84697 0.95850 1.21949 0.99620 0.96788 1.01536 1.21630 1.01640 1.22296 1.10969 0.91005 1.25710 1.01048 0.96952 0.94798 1.70028 1.31910 1.38963 1.15032 0.85538 0.79365 0.79391 0.77165 1.20245 1.18803 1.21730 1.21641 0.95195 0.95896 1.02272 1.22110 1.01134 0.94031 0.89941 0.91125 0.92359 0.92975 0.95179 0.90090 0.95213 0.89556 0.90225 0.90648 0.90832 0.91324 0.90479 0.74674 0.93206 0.90582 0.90359 0.91239 0.96379 0.93716 0.92838 0.91383 0.91520 0.95228 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.84 71.98 0.71 -1.13 16 2 C 0.05 0.69 5.68 86.30 0.49 1.18 16 3 N -0.55 -9.46 4.66 -896.37 -4.18 -13.64 16 4 C 0.06 0.95 5.46 86.32 0.47 1.42 16 5 C -0.11 -1.87 5.38 30.65 0.16 -1.70 16 6 C -0.09 -1.81 2.28 -10.72 -0.02 -1.83 16 7 C 0.12 3.05 5.64 86.38 0.49 3.54 16 8 N -1.12 -33.51 5.62 -187.50 -1.05 -34.56 16 9 S 2.80 107.67 6.09 -56.49 -0.34 107.32 16 10 O -1.01 -39.92 16.68 -128.00 -2.14 -42.06 16 11 O -1.02 -47.33 16.70 -128.00 -2.14 -49.47 16 12 N -1.00 -40.20 3.12 -520.45 -1.62 -41.83 16 13 C 0.10 3.29 9.28 127.77 1.19 4.48 16 14 C 0.27 13.32 2.62 44.24 0.12 13.44 16 15 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 16 C -0.14 -6.70 8.97 71.98 0.65 -6.05 16 17 C -0.53 -26.26 7.99 25.60 0.20 -26.05 16 18 H 0.07 3.38 7.33 -2.91 -0.02 3.36 16 19 C 0.01 0.74 5.30 84.66 0.45 1.19 16 20 N -0.92 -50.98 11.32 21.45 0.24 -50.73 16 21 Si 0.96 40.78 29.54 68.60 2.03 42.81 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 25 C -0.11 -2.26 5.24 30.65 0.16 -2.10 16 26 C 0.06 1.00 5.29 86.33 0.46 1.46 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.69 6.43 -2.38 -0.02 0.67 16 30 H 0.03 0.43 8.12 -2.38 -0.02 0.41 16 31 H 0.08 1.01 7.99 -2.38 -0.02 0.99 16 32 H 0.03 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.20 8.02 -2.39 -0.02 1.18 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.88 7.75 -2.39 -0.02 1.86 16 39 H 0.42 11.48 8.39 -96.75 -0.81 10.67 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 2.10 7.79 -2.38 -0.02 2.09 16 42 H 0.08 2.63 7.02 -2.39 -0.02 2.61 16 43 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 44 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.04 1.98 7.67 -2.39 -0.02 1.96 16 46 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 47 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.07 1.37 7.62 -2.39 -0.02 1.35 16 49 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.08 1.37 6.21 -2.39 -0.01 1.36 16 Total: -1.00 -64.67 395.23 -3.59 -68.26 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.09 Total: 26.05 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.52 Total: -12.16 kcal Atomic # 7 Polarization: -134.15 SS G_CDS: -6.61 Total: -140.76 kcal Atomic # 8 Polarization: -87.25 SS G_CDS: -4.27 Total: -91.53 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 107.67 SS G_CDS: -0.34 Total: 107.32 kcal Total: -64.67 -3.59 -68.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514741078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.527 kcal (2) G-P(sol) polarization free energy of solvation -64.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds