Wall clock time and date at job start Tue Mar 31 2020 17:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00014 * 2 1 4 4 H 1.48502 * 109.46848 * 269.99595 * 3 2 1 5 5 H 1.48493 * 109.47425 * 29.99419 * 3 2 1 6 6 H 1.48500 * 109.47487 * 150.00078 * 3 2 1 7 7 C 1.37881 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00528 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99608 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.53031 * 109.45852 * 175.00060 * 10 9 7 12 12 C 1.53192 * 109.31310 * 181.38124 * 11 10 9 13 13 N 1.46920 * 108.89365 * 305.29643 * 12 11 10 14 14 C 1.34782 * 120.62999 * 233.67548 * 13 12 11 15 15 O 1.21588 * 119.99860 * 174.77474 * 14 13 12 16 16 N 1.34773 * 119.99805 * 354.77405 * 14 13 12 17 17 C 1.46503 * 120.00018 * 184.97803 * 16 14 13 18 18 C 1.50694 * 109.47263 * 180.02562 * 17 16 14 19 19 N 1.30831 * 125.96551 * 274.71953 * 18 17 16 20 20 C 1.33245 * 109.83209 * 179.86605 * 19 18 17 21 21 C 1.50700 * 125.52718 * 180.12543 * 20 19 18 22 22 C 1.52996 * 117.49839 * 189.04144 * 21 20 19 23 23 C 1.53001 * 117.49543 * 120.38001 * 21 20 19 24 24 N 1.30712 * 108.94441 * 0.40061 * 20 19 18 25 25 N 1.34429 * 125.96016 * 95.02776 * 18 17 16 26 26 H 0.97003 * 126.82898 * 359.94265 * 25 18 17 27 27 C 1.47201 * 118.55840 * 53.53732 * 13 12 11 28 28 C 1.53041 * 109.45679 * 295.06695 * 10 9 7 29 29 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46835 * 60.00242 * 9 7 2 31 31 H 1.09002 * 109.47306 * 300.00377 * 9 7 2 32 32 H 1.08995 * 109.45924 * 55.02399 * 10 9 7 33 33 H 1.09008 * 109.50250 * 61.43112 * 11 10 9 34 34 H 1.09004 * 109.52800 * 301.35404 * 11 10 9 35 35 H 1.09008 * 109.58273 * 65.15364 * 12 11 10 36 36 H 1.09004 * 109.58483 * 185.43268 * 12 11 10 37 37 H 0.97009 * 120.00436 * 4.98438 * 16 14 13 38 38 H 1.08997 * 109.47393 * 300.00233 * 17 16 14 39 39 H 1.09000 * 109.46681 * 60.00213 * 17 16 14 40 40 H 1.09000 * 115.55153 * 334.71762 * 21 20 19 41 41 H 1.08998 * 117.50158 * 0.02562 * 22 21 20 42 42 H 1.09003 * 117.49991 * 145.02275 * 22 21 20 43 43 H 1.09002 * 117.49579 * 214.97944 * 23 21 20 44 44 H 1.08996 * 117.50336 * 359.97438 * 23 21 20 45 45 H 1.09000 * 109.53945 * 186.66968 * 27 13 12 46 46 H 1.09004 * 109.67937 * 66.36696 * 27 13 12 47 47 H 1.08997 * 109.50104 * 298.56934 * 28 10 9 48 48 H 1.09006 * 109.49750 * 58.66821 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5468 -2.6381 -0.1242 12 6 6.0509 -4.0843 -0.1587 13 7 5.5446 -4.7929 1.0246 14 6 6.3896 -5.4422 1.8499 15 8 5.9719 -5.9439 2.8756 16 7 7.6975 -5.5351 1.5382 17 6 8.5956 -6.3323 2.3773 18 6 9.9929 -6.2720 1.8162 19 7 10.4761 -7.0397 0.8734 20 6 11.7422 -6.7073 0.6243 21 6 12.6347 -7.3625 -0.3980 22 6 14.1167 -6.9827 -0.3889 23 6 13.2037 -6.4781 -1.5093 24 7 12.0863 -5.7247 1.4146 25 7 10.9622 -5.4237 2.2010 26 1 10.8979 -4.7392 2.8853 27 6 4.0968 -4.7753 1.2894 28 6 3.6146 -3.3213 1.3078 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8753 -0.6804 -0.8888 32 1 3.5875 -3.1751 -0.8414 33 1 5.9826 -2.1213 0.7310 34 1 5.8374 -2.1294 -1.0434 35 1 5.6889 -4.5759 -1.0617 36 1 7.1409 -4.0916 -0.1505 37 1 8.0443 -5.0741 0.7583 38 1 8.5944 -5.9336 3.3918 39 1 8.2545 -7.3674 2.3933 40 1 12.3802 -8.3910 -0.6540 41 1 14.4463 -6.2593 0.3567 42 1 14.8373 -7.7613 -0.6393 43 1 13.3241 -6.9250 -2.4962 44 1 12.9323 -5.4225 -1.5012 45 1 3.8972 -5.2387 2.2556 46 1 3.5736 -5.3239 0.5062 47 1 4.0684 -2.7981 2.1494 48 1 2.5293 -3.2992 1.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566006548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:44 Heat of formation + Delta-G solvation = 79.622451 kcal Electronic energy + Delta-G solvation = -27964.960520 eV Core-core repulsion = 24057.396799 eV Total energy + Delta-G solvation = -3907.563721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.71717 -40.38064 -37.81976 -37.55809 -35.26626 -34.13459 -32.93333 -32.25275 -31.67084 -30.68116 -28.77122 -27.08975 -24.99239 -24.61991 -22.93510 -22.82334 -21.82552 -21.52847 -20.35044 -20.14604 -19.48082 -18.63526 -17.91612 -16.81627 -16.62431 -16.11078 -15.77252 -15.69236 -15.23476 -14.70415 -14.38799 -14.25994 -14.24599 -13.84836 -13.48670 -13.26632 -13.00226 -12.97299 -12.62561 -12.41406 -12.36558 -12.08586 -11.99643 -11.64456 -11.53351 -11.18491 -11.00440 -10.91577 -10.68170 -10.52205 -10.49762 -10.39202 -10.18272 -9.84470 -9.83117 -9.72749 -9.53474 -9.44383 -9.09122 -8.55435 -8.39586 -6.05986 -4.03469 0.92657 2.02566 2.13770 2.72372 3.12480 3.25788 3.27821 3.36090 3.38748 3.48251 3.78230 4.02763 4.12760 4.41516 4.42991 4.53229 4.68004 4.88040 5.07203 5.12912 5.19365 5.19663 5.24591 5.29665 5.32378 5.50588 5.56417 5.58767 5.67452 5.70528 5.74688 5.85692 5.88171 5.99768 6.08015 6.16770 6.24600 6.35295 6.47582 6.50200 6.76173 6.84276 6.87584 7.01987 7.20895 7.40820 7.57956 7.77500 7.81875 8.48905 8.51802 8.98931 9.56854 11.07228 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002110 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.928990 B =13267.031142 C =14116.411468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.133 4.133 12 C 0.114 3.886 13 N -0.619 5.619 14 C 0.713 3.287 15 O -0.590 6.590 16 N -0.748 5.748 17 C 0.221 3.779 18 C 0.272 3.728 19 N -0.516 5.516 20 C 0.258 3.742 21 C -0.075 4.075 22 C -0.160 4.160 23 C -0.157 4.157 24 N -0.305 5.305 25 N -0.470 5.470 26 H 0.444 0.556 27 C 0.127 3.873 28 C -0.120 4.120 29 H 0.262 0.738 30 H 0.014 0.986 31 H 0.010 0.990 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.339 -13.653 0.378 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.090 4.090 11 C -0.171 4.171 12 C -0.010 4.010 13 N -0.356 5.356 14 C 0.414 3.586 15 O -0.469 6.469 16 N -0.409 5.409 17 C 0.094 3.906 18 C -0.007 4.007 19 N -0.245 5.245 20 C -0.024 4.024 21 C -0.096 4.096 22 C -0.198 4.198 23 C -0.196 4.196 24 N -0.135 5.135 25 N -0.189 5.189 26 H 0.291 0.709 27 C 0.005 3.995 28 C -0.158 4.158 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.236 0.764 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.151 0.849 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 26.384 -13.899 0.956 29.836 hybrid contribution 0.343 1.782 0.100 1.817 sum 26.727 -12.117 1.056 29.365 Atomic orbital electron populations 1.69912 1.06252 1.26814 1.51236 1.25035 0.94703 0.99101 0.94722 0.86809 0.80339 0.83880 0.78385 1.20418 1.21489 1.19165 1.21132 0.89378 0.94366 1.50513 0.90774 1.19617 0.97277 0.91602 0.96126 1.20999 0.91746 0.99131 0.97173 1.22068 0.98594 0.94317 1.02113 1.21672 0.97360 0.93857 0.88087 1.47415 1.07712 1.54109 1.26370 1.15658 0.80222 0.79509 0.83179 1.90919 1.76457 1.53887 1.25604 1.45114 1.07452 1.55803 1.32504 1.19418 0.78834 0.98977 0.93374 1.24275 0.93940 0.88914 0.93607 1.70347 1.09721 1.27699 1.16728 1.23244 0.90551 0.92561 0.95996 1.20107 0.93101 0.99641 0.96746 1.23068 0.91205 1.03809 1.01740 1.23067 1.02494 0.99900 0.94137 1.77984 1.06760 1.19628 1.09104 1.48049 1.08635 1.30090 1.32093 0.70933 1.21755 0.76943 0.98600 1.02243 1.21922 1.02753 0.92949 0.98165 0.92792 0.96730 0.97125 0.91629 0.92071 0.91083 0.91121 0.91772 0.76399 0.88934 0.87581 0.84901 0.87815 0.87711 0.87537 0.88449 0.89312 0.91648 0.92401 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -13.99 8.94 -34.43 -0.31 -14.30 16 8 H 0.07 2.14 7.30 -52.49 -0.38 1.76 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 10 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 11 C -0.13 -1.87 5.36 -26.62 -0.14 -2.01 16 12 C 0.11 1.32 6.38 -3.71 -0.02 1.30 16 13 N -0.62 -8.46 2.98 -178.27 -0.53 -8.99 16 14 C 0.71 9.88 8.30 -86.92 -0.72 9.16 16 15 O -0.59 -10.09 15.79 5.29 0.08 -10.01 16 16 N -0.75 -7.63 5.46 -66.42 -0.36 -7.99 16 17 C 0.22 1.89 6.30 -5.19 -0.03 1.86 16 18 C 0.27 2.42 7.60 -155.70 -1.18 1.24 16 19 N -0.52 -5.59 11.19 -8.16 -0.09 -5.68 16 20 C 0.26 2.62 7.69 -156.85 -1.21 1.41 16 21 C -0.08 -0.57 6.33 -91.77 -0.58 -1.15 16 22 C -0.16 -0.94 10.14 -26.69 -0.27 -1.21 16 23 C -0.16 -0.95 10.24 -26.69 -0.27 -1.22 16 24 N -0.31 -3.05 12.34 32.42 0.40 -2.65 16 25 N -0.47 -3.72 7.45 32.62 0.24 -3.48 16 26 H 0.44 2.21 8.96 -182.33 -1.63 0.57 16 27 C 0.13 1.90 6.45 -3.56 -0.02 1.87 16 28 C -0.12 -2.08 5.19 -26.61 -0.14 -2.22 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 31 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.06 0.59 5.64 -51.93 -0.29 0.30 16 37 H 0.40 3.62 5.95 -40.82 -0.24 3.38 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.70 7.88 -51.93 -0.41 0.29 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 1.76 6.91 -51.93 -0.36 1.40 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -34.14 387.83 -12.29 -46.43 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.69 Total: 1.65 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -5.29 Total: -5.27 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.43 Total: -55.34 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.14 -12.29 -46.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566006548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.054 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds