Wall clock time and date at job start Tue Mar 31 2020 17:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00014 * 2 1 4 4 H 1.48502 * 109.46848 * 269.99595 * 3 2 1 5 5 H 1.48493 * 109.47425 * 29.99419 * 3 2 1 6 6 H 1.48500 * 109.47487 * 150.00078 * 3 2 1 7 7 C 1.37881 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00528 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99608 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.53031 * 109.45852 * 175.00060 * 10 9 7 12 12 C 1.53192 * 109.31310 * 181.38124 * 11 10 9 13 13 N 1.46920 * 108.89365 * 305.29643 * 12 11 10 14 14 C 1.34782 * 120.62999 * 233.67548 * 13 12 11 15 15 O 1.21588 * 119.99860 * 174.77474 * 14 13 12 16 16 N 1.34773 * 119.99805 * 354.77405 * 14 13 12 17 17 C 1.46503 * 120.00018 * 184.97803 * 16 14 13 18 18 C 1.50694 * 109.47263 * 180.02562 * 17 16 14 19 19 N 1.30831 * 125.96551 * 274.71953 * 18 17 16 20 20 C 1.33245 * 109.83209 * 179.86605 * 19 18 17 21 21 C 1.50700 * 125.52718 * 180.12543 * 20 19 18 22 22 C 1.52996 * 117.49839 * 189.04144 * 21 20 19 23 23 C 1.53001 * 117.49543 * 120.38001 * 21 20 19 24 24 N 1.30712 * 108.94441 * 0.40061 * 20 19 18 25 25 N 1.34429 * 125.96016 * 95.02776 * 18 17 16 26 26 H 0.97003 * 126.82898 * 359.94265 * 25 18 17 27 27 C 1.47201 * 118.55840 * 53.53732 * 13 12 11 28 28 C 1.53041 * 109.45679 * 295.06695 * 10 9 7 29 29 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46835 * 60.00242 * 9 7 2 31 31 H 1.09002 * 109.47306 * 300.00377 * 9 7 2 32 32 H 1.08995 * 109.45924 * 55.02399 * 10 9 7 33 33 H 1.09008 * 109.50250 * 61.43112 * 11 10 9 34 34 H 1.09004 * 109.52800 * 301.35404 * 11 10 9 35 35 H 1.09008 * 109.58273 * 65.15364 * 12 11 10 36 36 H 1.09004 * 109.58483 * 185.43268 * 12 11 10 37 37 H 0.97009 * 120.00436 * 4.98438 * 16 14 13 38 38 H 1.08997 * 109.47393 * 300.00233 * 17 16 14 39 39 H 1.09000 * 109.46681 * 60.00213 * 17 16 14 40 40 H 1.09000 * 115.55153 * 334.71762 * 21 20 19 41 41 H 1.08998 * 117.50158 * 0.02562 * 22 21 20 42 42 H 1.09003 * 117.49991 * 145.02275 * 22 21 20 43 43 H 1.09002 * 117.49579 * 214.97944 * 23 21 20 44 44 H 1.08996 * 117.50336 * 359.97438 * 23 21 20 45 45 H 1.09000 * 109.53945 * 186.66968 * 27 13 12 46 46 H 1.09004 * 109.67937 * 66.36696 * 27 13 12 47 47 H 1.08997 * 109.50104 * 298.56934 * 28 10 9 48 48 H 1.09006 * 109.49750 * 58.66821 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5468 -2.6381 -0.1242 12 6 6.0509 -4.0843 -0.1587 13 7 5.5446 -4.7929 1.0246 14 6 6.3896 -5.4422 1.8499 15 8 5.9719 -5.9439 2.8756 16 7 7.6975 -5.5351 1.5382 17 6 8.5956 -6.3323 2.3773 18 6 9.9929 -6.2720 1.8162 19 7 10.4761 -7.0397 0.8734 20 6 11.7422 -6.7073 0.6243 21 6 12.6347 -7.3625 -0.3980 22 6 14.1167 -6.9827 -0.3889 23 6 13.2037 -6.4781 -1.5093 24 7 12.0863 -5.7247 1.4146 25 7 10.9622 -5.4237 2.2010 26 1 10.8979 -4.7392 2.8853 27 6 4.0968 -4.7753 1.2894 28 6 3.6146 -3.3213 1.3078 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8753 -0.6804 -0.8888 32 1 3.5875 -3.1751 -0.8414 33 1 5.9826 -2.1213 0.7310 34 1 5.8374 -2.1294 -1.0434 35 1 5.6889 -4.5759 -1.0617 36 1 7.1409 -4.0916 -0.1505 37 1 8.0443 -5.0741 0.7583 38 1 8.5944 -5.9336 3.3918 39 1 8.2545 -7.3674 2.3933 40 1 12.3802 -8.3910 -0.6540 41 1 14.4463 -6.2593 0.3567 42 1 14.8373 -7.7613 -0.6393 43 1 13.3241 -6.9250 -2.4962 44 1 12.9323 -5.4225 -1.5012 45 1 3.8972 -5.2387 2.2556 46 1 3.5736 -5.3239 0.5062 47 1 4.0684 -2.7981 2.1494 48 1 2.5293 -3.2992 1.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566006548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:43 Heat of formation + Delta-G solvation = 57.770310 kcal Electronic energy + Delta-G solvation = -27965.908100 eV Core-core repulsion = 24057.396799 eV Total energy + Delta-G solvation = -3908.511301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.40288 -41.46520 -38.97148 -38.15064 -36.19648 -35.69419 -34.07855 -33.61358 -32.59909 -31.78894 -30.35337 -28.04067 -26.12063 -25.57388 -24.12616 -23.33029 -23.24922 -22.29221 -21.45296 -20.96499 -20.62464 -19.56328 -18.96835 -18.63724 -17.62538 -16.84141 -16.66062 -16.45298 -16.34637 -15.96593 -15.53143 -15.35999 -15.14784 -15.14250 -14.83246 -14.54113 -14.24048 -14.17770 -13.96748 -13.43208 -13.20284 -13.14870 -13.08873 -12.82079 -12.41714 -12.38660 -12.21274 -12.15590 -12.00524 -11.70751 -11.50760 -11.48211 -11.27943 -11.20328 -11.13763 -11.09447 -10.89060 -10.70540 -10.47606 -10.39108 -9.50824 -8.24640 -6.26414 0.22945 1.30696 1.35592 1.37994 1.48443 1.48748 1.83828 2.05661 2.38115 2.61829 2.87139 2.97958 3.10920 3.42546 3.51338 3.87732 3.91385 3.98200 4.03787 4.07324 4.15600 4.21329 4.41990 4.44843 4.48564 4.50882 4.66186 4.78310 4.80173 4.86892 4.87523 4.94454 5.04949 5.06993 5.15430 5.19041 5.19924 5.23356 5.25312 5.26112 5.33311 5.40943 5.59660 5.73495 5.75084 5.87438 5.95708 6.35486 6.81628 6.83567 6.89883 7.37239 7.43558 8.91806 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002110 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.928990 B =13267.031142 C =14116.411468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.249 1.249 7 C -0.517 4.517 8 H 0.038 0.962 9 C -0.007 4.007 10 C -0.070 4.070 11 C -0.125 4.125 12 C 0.116 3.884 13 N -0.622 5.622 14 C 0.712 3.288 15 O -0.626 6.626 16 N -0.732 5.732 17 C 0.225 3.775 18 C 0.278 3.722 19 N -0.542 5.542 20 C 0.248 3.752 21 C -0.094 4.094 22 C -0.151 4.151 23 C -0.151 4.151 24 N -0.322 5.322 25 N -0.459 5.459 26 H 0.457 0.543 27 C 0.137 3.863 28 C -0.112 4.112 29 H 0.263 0.737 30 H 0.012 0.988 31 H 0.019 0.981 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.407 0.593 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.674 -13.522 -0.443 32.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.172 1.172 7 C -0.555 4.555 8 H 0.057 0.943 9 C -0.045 4.045 10 C -0.088 4.088 11 C -0.163 4.163 12 C -0.006 4.006 13 N -0.358 5.358 14 C 0.414 3.586 15 O -0.507 6.507 16 N -0.393 5.393 17 C 0.098 3.902 18 C -0.002 4.002 19 N -0.271 5.271 20 C -0.033 4.033 21 C -0.115 4.115 22 C -0.189 4.189 23 C -0.189 4.189 24 N -0.152 5.152 25 N -0.179 5.179 26 H 0.306 0.694 27 C 0.014 3.986 28 C -0.151 4.151 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.111 0.889 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 29.775 -13.760 0.123 32.801 hybrid contribution -0.733 1.675 0.378 1.868 sum 29.042 -12.085 0.502 31.460 Atomic orbital electron populations 1.70075 1.08224 1.27808 1.53369 1.25996 0.95537 1.03359 0.94743 0.85718 0.79439 0.78778 0.79029 1.19202 1.21627 1.17245 1.21499 0.92056 0.92944 1.48983 0.94346 1.19590 0.93941 0.94826 0.96096 1.20918 0.94892 0.96057 0.96970 1.21972 0.94982 0.96350 1.02985 1.21788 0.99201 0.91949 0.87648 1.47392 1.06996 1.54418 1.27001 1.15738 0.81045 0.79212 0.82633 1.90901 1.77294 1.55333 1.27147 1.44933 1.06281 1.55341 1.32704 1.19472 0.78235 0.98690 0.93769 1.24168 0.93926 0.88801 0.93294 1.70335 1.10365 1.28663 1.17732 1.23716 0.90673 0.92594 0.96367 1.20302 0.93817 1.00154 0.97207 1.23116 0.90684 1.03884 1.01191 1.23120 1.01811 0.99157 0.94818 1.77948 1.07576 1.20049 1.09581 1.47996 1.07949 1.30042 1.31963 0.69444 1.21490 0.78305 0.96550 1.02230 1.21766 1.00723 0.94785 0.97797 0.92818 0.97007 0.96250 0.92127 0.92202 0.89297 0.89787 0.88584 0.75438 0.87364 0.87918 0.84206 0.88913 0.85648 0.85636 0.89525 0.90239 0.90681 0.93312 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.45 16 3 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.52 -28.68 8.94 25.60 0.23 -28.45 16 8 H 0.04 2.34 7.30 -2.91 -0.02 2.32 16 9 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 10 C -0.07 -2.43 2.10 -10.77 -0.02 -2.45 16 11 C -0.12 -3.13 5.36 30.67 0.16 -2.97 16 12 C 0.12 2.31 6.38 86.36 0.55 2.86 16 13 N -0.62 -15.73 2.98 -836.18 -2.50 -18.22 16 14 C 0.71 18.37 8.30 179.05 1.49 19.86 16 15 O -0.63 -20.76 15.79 -3.99 -0.06 -20.82 16 16 N -0.73 -13.06 5.46 -482.30 -2.63 -15.69 16 17 C 0.22 3.40 6.30 85.63 0.54 3.93 16 18 C 0.28 4.42 7.60 138.22 1.05 5.47 16 19 N -0.54 -10.91 11.19 -179.73 -2.01 -12.92 16 20 C 0.25 4.70 7.69 138.63 1.07 5.76 16 21 C -0.09 -1.28 6.33 -11.54 -0.07 -1.35 16 22 C -0.15 -1.50 10.14 30.62 0.31 -1.19 16 23 C -0.15 -1.54 10.24 30.62 0.31 -1.22 16 24 N -0.32 -5.97 12.34 -51.33 -0.63 -6.60 16 25 N -0.46 -6.41 7.45 -50.71 -0.38 -6.79 16 26 H 0.46 3.58 8.96 -213.09 -1.91 1.67 16 27 C 0.14 4.05 6.45 86.31 0.56 4.61 16 28 C -0.11 -3.95 5.19 30.67 0.16 -3.79 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 31 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.10 1.34 5.64 -2.38 -0.01 1.33 16 37 H 0.41 6.00 5.95 -92.70 -0.55 5.44 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.14 7.88 -2.39 -0.02 1.12 16 42 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 2.51 7.01 -2.39 -0.02 2.50 16 46 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.06 2.42 6.91 -2.38 -0.02 2.40 16 Total: -1.00 -75.65 387.83 -0.65 -76.30 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -1.52 Total: 16.87 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 6.90 Total: 1.32 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -7.85 Total: -119.42 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -75.65 -0.65 -76.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566006548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.075 kcal (2) G-P(sol) polarization free energy of solvation -75.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds