Wall clock time and date at job start Tue Mar 31 2020 18:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48491 * 109.47459 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46891 * 300.00460 * 3 2 1 6 6 H 1.48505 * 109.47067 * 59.99555 * 3 2 1 7 7 C 1.37875 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00237 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47438 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46441 * 175.00096 * 10 9 7 12 12 C 1.53188 * 109.31522 * 181.38265 * 11 10 9 13 13 N 1.46922 * 108.77630 * 305.36065 * 12 11 10 14 14 C 1.34771 * 120.63325 * 233.58616 * 13 12 11 15 15 O 1.21286 * 120.00011 * 4.73879 * 14 13 12 16 16 C 1.50701 * 120.00312 * 184.74028 * 14 13 12 17 17 H 1.09003 * 107.87627 * 321.11040 * 16 14 13 18 18 C 1.51006 * 108.05545 * 204.51841 * 16 14 13 19 19 C 1.53684 * 110.84054 * 166.09693 * 18 16 14 20 20 C 1.51809 * 106.94591 * 79.04473 * 19 18 16 21 21 N 1.30306 * 127.92157 * 114.44513 * 20 19 18 22 22 N 1.29263 * 107.46529 * 180.02562 * 21 20 19 23 23 N 1.29143 * 109.43027 * 359.97438 * 22 21 20 24 24 N 1.28390 * 108.36150 * 359.97438 * 23 22 21 25 25 C 1.47656 * 127.74607 * 180.02562 * 24 23 22 26 26 C 1.50883 * 108.02880 * 77.71907 * 16 14 13 27 27 C 1.46923 * 118.73469 * 53.86172 * 13 12 11 28 28 C 1.53048 * 109.45760 * 295.06601 * 10 9 7 29 29 H 0.97004 * 120.00078 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46789 * 59.99399 * 9 7 2 31 31 H 1.09000 * 109.46587 * 299.99787 * 9 7 2 32 32 H 1.08998 * 109.46370 * 55.01959 * 10 9 7 33 33 H 1.09002 * 109.50060 * 61.42579 * 11 10 9 34 34 H 1.09010 * 109.49384 * 301.33518 * 11 10 9 35 35 H 1.09006 * 109.58473 * 185.57262 * 12 11 10 36 36 H 1.09004 * 109.70514 * 65.22133 * 12 11 10 37 37 H 1.08999 * 109.19874 * 45.75261 * 18 16 14 38 38 H 1.09011 * 109.19547 * 286.42885 * 18 16 14 39 39 H 1.08995 * 109.96009 * 198.40660 * 19 18 16 40 40 H 1.09004 * 109.95328 * 319.59898 * 19 18 16 41 41 H 1.08997 * 109.91689 * 5.15627 * 25 24 23 42 42 H 1.09004 * 109.91768 * 126.24867 * 25 24 23 43 43 H 1.08999 * 109.14279 * 73.85859 * 26 16 14 44 44 H 1.08994 * 109.09501 * 314.70683 * 26 16 14 45 45 H 1.08998 * 109.58892 * 65.92772 * 27 13 12 46 46 H 1.09008 * 109.58306 * 186.35199 * 27 13 12 47 47 H 1.09003 * 109.49744 * 298.56474 * 28 10 9 48 48 H 1.09004 * 109.50015 * 58.66151 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4841 -4.9837 0.1263 12 6 2.4845 -6.1433 0.1607 13 7 3.3504 -6.0561 -1.0230 14 6 3.4922 -7.1113 -1.8494 15 8 2.8370 -8.1157 -1.6683 16 6 4.4650 -7.0432 -2.9984 17 1 4.4141 -6.0397 -3.4209 18 6 4.0092 -8.0200 -4.0560 19 6 4.7375 -7.7658 -5.3852 20 6 6.1163 -8.3887 -5.2606 21 7 6.6027 -9.3972 -5.9272 22 7 7.8083 -9.5957 -5.5055 23 7 8.0900 -8.7322 -4.5875 24 7 7.0670 -7.9755 -4.4164 25 6 6.9241 -6.8482 -3.4735 26 6 5.8543 -7.2491 -2.4469 27 6 4.0636 -4.7987 -1.2853 28 6 3.0412 -3.6523 -1.3066 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.9291 -3.5553 0.8426 33 1 0.8182 -5.1029 -0.7285 34 1 0.8990 -4.9805 1.0461 35 1 1.9459 -7.0910 0.1504 36 1 3.0919 -6.0781 1.0634 37 1 2.9357 -7.9083 -4.2082 38 1 4.2198 -9.0356 -3.7205 39 1 4.1908 -8.2330 -6.2042 40 1 4.8266 -6.6938 -5.5615 41 1 7.8721 -6.6645 -2.9680 42 1 6.6100 -5.9529 -4.0100 43 1 5.9838 -8.2998 -2.1875 44 1 5.9752 -6.6423 -1.5495 45 1 4.7969 -4.6234 -0.4982 46 1 4.5674 -4.8588 -2.2501 47 1 2.3608 -3.7840 -2.1479 48 1 3.5646 -2.7014 -1.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575188405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:46 Heat of formation + Delta-G solvation = 64.194238 kcal Electronic energy + Delta-G solvation = -29384.257274 eV Core-core repulsion = 25476.024536 eV Total energy + Delta-G solvation = -3908.232739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.61703 -40.77735 -38.15384 -37.20643 -35.22770 -34.25604 -33.16193 -32.14772 -31.71256 -30.88165 -28.45757 -27.55207 -25.46772 -24.81162 -23.91440 -23.15801 -22.54925 -21.54710 -21.24544 -19.80819 -18.91509 -18.25854 -17.46844 -16.97819 -16.43045 -16.15296 -15.93504 -15.33491 -14.73932 -14.68488 -14.54090 -14.23535 -13.92652 -13.83091 -13.61791 -13.36649 -13.07259 -12.92140 -12.80960 -12.54454 -12.38221 -12.28359 -12.11800 -11.91919 -11.66733 -11.39784 -11.32474 -11.28816 -11.20879 -11.09787 -10.90947 -10.82707 -10.56441 -10.31345 -10.25098 -9.89937 -9.69279 -9.40050 -9.07920 -8.55293 -8.45678 -6.10036 -4.12745 0.99444 1.62895 1.97342 2.42987 2.83807 3.21866 3.30521 3.31926 3.51023 3.73921 3.86212 3.91063 4.22621 4.35622 4.35782 4.47348 4.54483 4.66065 4.77309 4.82361 4.97418 5.00822 5.18527 5.20147 5.23147 5.27783 5.30481 5.34290 5.37444 5.45169 5.48225 5.54198 5.61417 5.73651 5.82755 5.87907 5.90201 6.20085 6.22683 6.36781 6.49835 6.80253 6.83861 6.97126 7.34206 7.55877 7.69304 7.88998 8.03169 8.30490 8.34079 8.94020 9.51730 11.01123 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002565 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.707699 B =10912.896717 C =11735.725680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.111 3.889 13 N -0.603 5.603 14 C 0.515 3.485 15 O -0.544 6.544 16 C -0.115 4.115 17 H 0.102 0.898 18 C -0.103 4.103 19 C -0.037 4.037 20 C 0.186 3.814 21 N -0.302 5.302 22 N -0.085 5.085 23 N -0.094 5.094 24 N -0.304 5.304 25 C 0.117 3.883 26 C -0.130 4.130 27 C 0.098 3.902 28 C -0.119 4.119 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.108 -11.868 -6.504 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.099 4.099 11 C -0.167 4.167 12 C -0.011 4.011 13 N -0.335 5.335 14 C 0.302 3.698 15 O -0.421 6.421 16 C -0.136 4.136 17 H 0.120 0.880 18 C -0.142 4.142 19 C -0.078 4.078 20 C -0.093 4.093 21 N -0.151 5.151 22 N -0.078 5.078 23 N -0.080 5.080 24 N -0.107 5.107 25 C -0.003 4.003 26 C -0.168 4.168 27 C -0.024 4.024 28 C -0.157 4.157 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.650 -13.216 -6.720 18.856 hybrid contribution -0.151 1.893 0.462 1.955 sum 11.499 -11.323 -6.257 17.308 Atomic orbital electron populations 1.69968 1.06073 1.26531 1.50737 1.25029 0.94799 0.99236 0.95405 0.86598 0.80048 0.84058 0.77638 1.19770 1.21078 1.21057 1.21242 0.92887 0.90904 1.50547 0.92572 1.19127 0.93606 0.91009 0.97259 1.21187 0.98016 0.94700 0.96000 1.22023 0.97622 0.94709 1.02382 1.21700 0.92648 1.00485 0.86242 1.48203 1.46402 1.12759 1.26177 1.20417 0.83178 0.83040 0.83133 1.90702 1.46980 1.31491 1.72956 1.20800 0.94310 1.02883 0.95650 0.88031 1.21218 1.01576 1.00077 0.91333 1.20778 0.85512 1.01113 1.00384 1.26063 0.96470 0.95529 0.91240 1.74971 1.03593 1.13867 1.22633 1.78870 1.07210 1.16002 1.05727 1.78851 1.11342 1.02100 1.15703 1.48625 1.09297 1.24668 1.28114 1.22832 1.02923 0.85191 0.89394 1.21664 0.91675 1.04929 0.98576 1.22156 0.95425 0.83840 1.00979 1.21989 0.97475 0.97009 0.99261 0.93020 0.96643 0.96575 0.92330 0.92013 0.91085 0.89642 0.91725 0.88598 0.90269 0.86669 0.88166 0.85827 0.86583 0.89711 0.87571 0.91229 0.90441 0.92134 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.11 8.39 -34.44 -0.29 -13.40 16 8 H 0.06 1.36 7.05 -52.49 -0.37 0.99 16 9 C 0.03 0.62 4.45 -27.88 -0.12 0.50 16 10 C -0.08 -1.37 2.10 -90.58 -0.19 -1.56 16 11 C -0.13 -1.92 5.36 -26.62 -0.14 -2.06 16 12 C 0.11 1.41 6.44 -3.71 -0.02 1.39 16 13 N -0.60 -6.78 2.97 -172.50 -0.51 -7.30 16 14 C 0.52 5.77 6.50 -10.99 -0.07 5.70 16 15 O -0.54 -8.19 15.51 5.55 0.09 -8.10 16 16 C -0.12 -0.80 1.29 -93.84 -0.12 -0.92 16 17 H 0.10 0.50 5.73 -51.93 -0.30 0.20 16 18 C -0.10 -0.76 4.29 -27.38 -0.12 -0.88 16 19 C -0.04 -0.22 6.00 -26.98 -0.16 -0.38 16 20 C 0.19 1.73 7.10 -156.73 -1.11 0.61 16 21 N -0.30 -3.84 12.37 32.63 0.40 -3.43 16 22 N -0.08 -1.17 13.45 60.31 0.81 -0.36 16 23 N -0.09 -1.11 13.36 60.35 0.81 -0.31 16 24 N -0.30 -2.63 3.36 -57.26 -0.19 -2.83 16 25 C 0.12 0.51 6.73 -3.10 -0.02 0.49 16 26 C -0.13 -0.72 4.71 -27.48 -0.13 -0.85 16 27 C 0.10 0.95 5.46 -3.49 -0.02 0.94 16 28 C -0.12 -1.69 5.21 -26.38 -0.14 -1.83 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.75 7.89 -51.93 -0.41 0.34 16 38 H 0.08 0.75 7.92 -51.92 -0.41 0.34 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.34 7.89 -51.93 -0.41 -0.07 16 41 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.12 0.21 7.88 -51.93 -0.41 -0.20 16 43 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 44 H 0.11 0.48 7.11 -51.93 -0.37 0.12 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.50 5.27 -51.92 -0.27 0.22 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.09 1.32 6.91 -51.93 -0.36 0.96 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -33.98 373.11 -7.47 -41.45 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -7.45 Total: -4.34 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.76 Total: -10.85 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 2.05 Total: -38.96 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.98 -7.47 -41.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575188405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.645 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds