Wall clock time and date at job start Tue Mar 31 2020 18:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48491 * 109.47459 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46891 * 300.00460 * 3 2 1 6 6 H 1.48505 * 109.47067 * 59.99555 * 3 2 1 7 7 C 1.37875 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00237 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47438 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46441 * 175.00096 * 10 9 7 12 12 C 1.53188 * 109.31522 * 181.38265 * 11 10 9 13 13 N 1.46922 * 108.77630 * 305.36065 * 12 11 10 14 14 C 1.34771 * 120.63325 * 233.58616 * 13 12 11 15 15 O 1.21286 * 120.00011 * 4.73879 * 14 13 12 16 16 C 1.50701 * 120.00312 * 184.74028 * 14 13 12 17 17 H 1.09003 * 107.87627 * 321.11040 * 16 14 13 18 18 C 1.51006 * 108.05545 * 204.51841 * 16 14 13 19 19 C 1.53684 * 110.84054 * 166.09693 * 18 16 14 20 20 C 1.51809 * 106.94591 * 79.04473 * 19 18 16 21 21 N 1.30306 * 127.92157 * 114.44513 * 20 19 18 22 22 N 1.29263 * 107.46529 * 180.02562 * 21 20 19 23 23 N 1.29143 * 109.43027 * 359.97438 * 22 21 20 24 24 N 1.28390 * 108.36150 * 359.97438 * 23 22 21 25 25 C 1.47656 * 127.74607 * 180.02562 * 24 23 22 26 26 C 1.50883 * 108.02880 * 77.71907 * 16 14 13 27 27 C 1.46923 * 118.73469 * 53.86172 * 13 12 11 28 28 C 1.53048 * 109.45760 * 295.06601 * 10 9 7 29 29 H 0.97004 * 120.00078 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46789 * 59.99399 * 9 7 2 31 31 H 1.09000 * 109.46587 * 299.99787 * 9 7 2 32 32 H 1.08998 * 109.46370 * 55.01959 * 10 9 7 33 33 H 1.09002 * 109.50060 * 61.42579 * 11 10 9 34 34 H 1.09010 * 109.49384 * 301.33518 * 11 10 9 35 35 H 1.09006 * 109.58473 * 185.57262 * 12 11 10 36 36 H 1.09004 * 109.70514 * 65.22133 * 12 11 10 37 37 H 1.08999 * 109.19874 * 45.75261 * 18 16 14 38 38 H 1.09011 * 109.19547 * 286.42885 * 18 16 14 39 39 H 1.08995 * 109.96009 * 198.40660 * 19 18 16 40 40 H 1.09004 * 109.95328 * 319.59898 * 19 18 16 41 41 H 1.08997 * 109.91689 * 5.15627 * 25 24 23 42 42 H 1.09004 * 109.91768 * 126.24867 * 25 24 23 43 43 H 1.08999 * 109.14279 * 73.85859 * 26 16 14 44 44 H 1.08994 * 109.09501 * 314.70683 * 26 16 14 45 45 H 1.08998 * 109.58892 * 65.92772 * 27 13 12 46 46 H 1.09008 * 109.58306 * 186.35199 * 27 13 12 47 47 H 1.09003 * 109.49744 * 298.56474 * 28 10 9 48 48 H 1.09004 * 109.50015 * 58.66151 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4841 -4.9837 0.1263 12 6 2.4845 -6.1433 0.1607 13 7 3.3504 -6.0561 -1.0230 14 6 3.4922 -7.1113 -1.8494 15 8 2.8370 -8.1157 -1.6683 16 6 4.4650 -7.0432 -2.9984 17 1 4.4141 -6.0397 -3.4209 18 6 4.0092 -8.0200 -4.0560 19 6 4.7375 -7.7658 -5.3852 20 6 6.1163 -8.3887 -5.2606 21 7 6.6027 -9.3972 -5.9272 22 7 7.8083 -9.5957 -5.5055 23 7 8.0900 -8.7322 -4.5875 24 7 7.0670 -7.9755 -4.4164 25 6 6.9241 -6.8482 -3.4735 26 6 5.8543 -7.2491 -2.4469 27 6 4.0636 -4.7987 -1.2853 28 6 3.0412 -3.6523 -1.3066 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.9291 -3.5553 0.8426 33 1 0.8182 -5.1029 -0.7285 34 1 0.8990 -4.9805 1.0461 35 1 1.9459 -7.0910 0.1504 36 1 3.0919 -6.0781 1.0634 37 1 2.9357 -7.9083 -4.2082 38 1 4.2198 -9.0356 -3.7205 39 1 4.1908 -8.2330 -6.2042 40 1 4.8266 -6.6938 -5.5615 41 1 7.8721 -6.6645 -2.9680 42 1 6.6100 -5.9529 -4.0100 43 1 5.9838 -8.2998 -2.1875 44 1 5.9752 -6.6423 -1.5495 45 1 4.7969 -4.6234 -0.4982 46 1 4.5674 -4.8588 -2.2501 47 1 2.3608 -3.7840 -2.1479 48 1 3.5646 -2.7014 -1.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575188405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:45 Heat of formation + Delta-G solvation = 42.003981 kcal Electronic energy + Delta-G solvation = -29385.219516 eV Core-core repulsion = 25476.024536 eV Total energy + Delta-G solvation = -3909.194981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.35992 -41.62722 -39.08699 -38.08166 -35.90752 -35.69486 -34.22650 -33.52755 -32.33060 -31.90850 -29.85931 -28.39128 -26.27673 -26.05837 -24.70448 -24.16918 -23.76061 -22.35317 -22.06331 -20.93795 -19.83073 -18.91391 -18.38997 -18.22403 -17.74696 -17.03180 -16.59543 -16.49142 -16.10725 -15.49803 -15.26127 -15.13108 -14.88250 -14.83670 -14.47238 -14.40832 -14.16670 -13.92726 -13.79134 -13.57522 -13.30634 -13.10782 -12.95474 -12.87941 -12.79080 -12.64670 -12.49157 -12.32686 -12.25272 -12.15287 -12.02926 -11.82423 -11.79371 -11.66552 -11.29836 -11.09513 -11.02566 -10.79647 -10.58875 -10.48830 -9.56807 -8.13309 -6.22668 0.28227 1.11410 1.16406 1.43952 1.45788 1.56927 1.59799 2.00026 2.45584 2.93609 3.20940 3.21495 3.29563 3.43549 3.71198 3.80850 3.92672 4.05357 4.09154 4.12250 4.17209 4.21493 4.26322 4.30114 4.38154 4.44618 4.48499 4.63957 4.68819 4.74242 4.78903 4.85028 4.85666 4.91726 4.94308 5.00101 5.05192 5.16488 5.17429 5.32123 5.36227 5.39378 5.48124 5.59745 5.64890 5.87545 5.94098 6.31888 6.48730 6.95686 7.17087 7.46725 7.54834 8.98876 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002565 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.707699 B =10912.896717 C =11735.725680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.006 4.006 3 Si 0.959 3.041 4 H -0.252 1.252 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.073 4.073 11 C -0.122 4.122 12 C 0.118 3.882 13 N -0.604 5.604 14 C 0.512 3.488 15 O -0.589 6.589 16 C -0.107 4.107 17 H 0.139 0.861 18 C -0.098 4.098 19 C -0.029 4.029 20 C 0.190 3.810 21 N -0.337 5.337 22 N -0.123 5.123 23 N -0.106 5.106 24 N -0.295 5.295 25 C 0.110 3.890 26 C -0.124 4.124 27 C 0.105 3.895 28 C -0.116 4.116 29 H 0.259 0.741 30 H -0.016 1.016 31 H -0.020 1.020 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.058 0.942 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.048 0.952 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 -10.248 -7.096 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.203 4.203 3 Si 0.784 3.216 4 H -0.175 1.175 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.007 4.007 10 C -0.092 4.092 11 C -0.160 4.160 12 C -0.004 4.004 13 N -0.336 5.336 14 C 0.302 3.698 15 O -0.470 6.470 16 C -0.128 4.128 17 H 0.156 0.844 18 C -0.137 4.137 19 C -0.069 4.069 20 C -0.089 4.089 21 N -0.186 5.186 22 N -0.117 5.117 23 N -0.092 5.092 24 N -0.099 5.099 25 C -0.008 4.008 26 C -0.162 4.162 27 C -0.016 4.016 28 C -0.154 4.154 29 H 0.068 0.932 30 H 0.002 0.998 31 H -0.002 1.002 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.140 0.860 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.077 0.923 44 H 0.145 0.855 45 H 0.110 0.890 46 H 0.142 0.858 47 H 0.067 0.933 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.481 -11.587 -7.307 19.933 hybrid contribution -1.158 1.397 0.737 1.958 sum 13.323 -10.190 -6.570 18.014 Atomic orbital electron populations 1.70127 1.08034 1.27335 1.52638 1.25981 0.95562 1.03359 0.95381 0.85490 0.79701 0.79244 0.77158 1.17510 1.21052 1.21471 1.21710 0.93771 0.91532 1.48772 0.90939 1.19045 0.94171 0.93494 0.93984 1.21035 0.96972 0.92880 0.98298 1.21894 0.97870 0.94948 1.01314 1.21504 0.92573 0.98436 0.87926 1.48285 1.46099 1.13563 1.25617 1.21178 0.83072 0.82079 0.83496 1.90693 1.48926 1.33269 1.74073 1.20876 0.93696 1.04595 0.93597 0.84398 1.21122 1.01514 0.98732 0.92375 1.20967 0.83174 1.03276 0.99434 1.26576 0.97399 0.94567 0.90355 1.74870 1.03723 1.15704 1.24340 1.78832 1.08182 1.17492 1.07147 1.78739 1.12647 1.02390 1.15453 1.48968 1.08220 1.24722 1.27958 1.23364 1.03640 0.84844 0.88967 1.21634 0.90956 1.03944 0.99699 1.22278 0.94025 0.80824 1.04469 1.21893 0.97964 0.98958 0.96624 0.93216 0.99796 1.00203 0.91855 0.93711 0.91868 0.90772 0.90023 0.89132 0.93221 0.86042 0.84170 0.83796 0.82478 0.92282 0.85492 0.89007 0.85831 0.93314 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 13.29 21.45 0.28 -54.71 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.96 40.90 29.54 68.60 2.03 42.92 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.52 -26.18 8.39 25.60 0.21 -25.96 16 8 H 0.07 3.34 7.05 -2.91 -0.02 3.32 16 9 C 0.03 1.43 4.45 29.85 0.13 1.56 16 10 C -0.07 -2.43 2.10 -10.77 -0.02 -2.46 16 11 C -0.12 -3.64 5.36 30.67 0.16 -3.47 16 12 C 0.12 2.83 6.44 86.36 0.56 3.39 16 13 N -0.60 -11.72 2.97 -818.07 -2.43 -14.14 16 14 C 0.51 10.17 6.50 87.66 0.57 10.74 16 15 O -0.59 -17.41 15.51 -3.05 -0.05 -17.46 16 16 C -0.11 -1.06 1.29 -12.88 -0.02 -1.07 16 17 H 0.14 0.39 5.73 -2.39 -0.01 0.38 16 18 C -0.10 -1.22 4.29 30.18 0.13 -1.09 16 19 C -0.03 -0.24 6.00 30.43 0.18 -0.05 16 20 C 0.19 3.12 7.10 139.13 0.99 4.11 16 21 N -0.34 -8.42 12.37 -50.67 -0.63 -9.05 16 22 N -0.12 -3.40 13.45 36.91 0.50 -2.90 16 23 N -0.11 -2.37 13.36 37.02 0.49 -1.87 16 24 N -0.30 -4.27 3.36 -335.06 -1.13 -5.40 16 25 C 0.11 0.39 6.73 86.36 0.58 0.97 16 26 C -0.12 -0.84 4.71 30.11 0.14 -0.70 16 27 C 0.11 1.51 5.46 86.51 0.47 1.98 16 28 C -0.12 -2.96 5.21 30.82 0.16 -2.80 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.07 1.98 7.00 -2.38 -0.02 1.96 16 36 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.09 1.26 7.89 -2.39 -0.02 1.24 16 38 H 0.05 0.92 7.92 -2.38 -0.02 0.90 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.14 0.09 7.89 -2.38 -0.02 0.07 16 41 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.16 -0.64 7.88 -2.39 -0.02 -0.66 16 43 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 44 H 0.13 0.42 7.11 -2.39 -0.02 0.41 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 46 H 0.12 0.67 5.27 -2.38 -0.01 0.65 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 2.17 6.91 -2.39 -0.02 2.15 16 Total: -1.00 -81.04 373.11 4.76 -76.28 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: 0.96 Total: 1.05 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 4.72 Total: -14.73 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.90 Total: -88.07 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.05 Total: -17.46 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -81.04 4.76 -76.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575188405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.289 kcal (2) G-P(sol) polarization free energy of solvation -81.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds