Wall clock time and date at job start Tue Mar 31 2020 18:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48491 * 109.47374 * 272.91555 * 3 2 1 5 5 H 1.48496 * 109.47126 * 32.91994 * 3 2 1 6 6 H 1.48508 * 109.46801 * 152.91402 * 3 2 1 7 7 C 1.38810 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00381 * 339.35400 * 7 2 1 9 9 N 1.36939 * 119.99895 * 159.36278 * 7 2 1 10 10 C 1.46929 * 120.63179 * 332.61900 * 9 7 2 11 11 C 1.53195 * 108.77563 * 233.59326 * 10 9 7 12 12 C 1.53035 * 109.31402 * 305.36068 * 11 10 9 13 13 N 1.46495 * 109.46289 * 181.38929 * 12 11 10 14 14 C 1.34774 * 120.00240 * 154.99900 * 13 12 11 15 15 O 1.21588 * 119.99763 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00409 * 179.97438 * 14 13 12 17 17 C 1.47024 * 125.64677 * 359.69489 * 16 14 13 18 18 C 1.54328 * 107.26801 * 178.84480 * 17 16 14 19 19 C 1.55154 * 103.02018 * 338.14339 * 18 17 16 20 20 H 1.08999 * 111.00411 * 277.22819 * 19 18 17 21 21 N 1.46503 * 111.03710 * 153.38993 * 19 18 17 22 22 C 1.34947 * 126.04115 * 281.05016 * 21 19 18 23 23 C 1.35314 * 107.74708 * 179.84161 * 22 21 19 24 24 C 1.39875 * 107.92121 * 0.41803 * 23 22 21 25 25 N 1.30837 * 108.20281 * 359.74256 * 24 23 22 26 26 C 1.47420 * 125.65055 * 180.02562 * 16 14 13 27 27 C 1.53043 * 109.53770 * 61.36440 * 12 11 10 28 28 C 1.46926 * 120.63548 * 152.60314 * 9 7 2 29 29 H 0.97000 * 120.00160 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58492 * 113.79799 * 10 9 7 31 31 H 1.09007 * 109.58077 * 353.37582 * 10 9 7 32 32 H 1.09003 * 109.49186 * 185.40757 * 11 10 9 33 33 H 1.08996 * 109.50113 * 65.32012 * 11 10 9 34 34 H 1.09000 * 109.45812 * 301.36659 * 12 11 10 35 35 H 0.96999 * 119.99831 * 335.00520 * 13 12 11 36 36 H 1.08998 * 109.88532 * 298.39604 * 17 16 14 37 37 H 1.09005 * 109.87817 * 59.55581 * 17 16 14 38 38 H 1.09001 * 110.85264 * 219.67129 * 18 17 16 39 39 H 1.09001 * 110.66669 * 96.52029 * 18 17 16 40 40 H 1.08002 * 126.12619 * 359.97438 * 22 21 19 41 41 H 1.07999 * 126.04331 * 180.16126 * 23 22 21 42 42 H 1.07998 * 125.89996 * 179.76588 * 24 23 22 43 43 H 1.09000 * 110.37070 * 322.92806 * 26 16 14 44 44 H 1.08993 * 110.36897 * 85.25720 * 26 16 14 45 45 H 1.09007 * 109.49248 * 58.58962 * 27 12 11 46 46 H 1.08999 * 109.49992 * 178.68388 * 27 12 11 47 47 H 1.08994 * 109.58700 * 246.20028 * 28 9 7 48 48 H 1.09009 * 109.58423 * 6.62117 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4360 2.0820 -1.3982 5 1 1.4799 2.6340 0.7609 6 1 3.5772 1.4231 0.6375 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3288 9 7 3.3137 -1.2401 -0.4185 10 6 3.8176 -0.2583 -1.3886 11 6 4.4627 -1.0076 -2.5587 12 6 5.5293 -1.9641 -2.0208 13 7 6.1714 -2.6583 -3.1397 14 6 7.4218 -3.1426 -3.0040 15 8 8.0168 -3.0038 -1.9528 16 7 8.0123 -3.7817 -4.0332 17 6 7.4078 -4.0249 -5.3511 18 6 8.4593 -4.7599 -6.2090 19 6 9.7962 -4.3963 -5.5105 20 1 10.1560 -3.4212 -5.8388 21 7 10.8078 -5.4308 -5.7401 22 6 10.8960 -6.6124 -5.0943 23 6 11.9601 -7.2794 -5.5980 24 6 12.5481 -6.4738 -6.5788 25 7 11.8582 -5.3654 -6.6649 26 6 9.3689 -4.3587 -4.0217 27 6 4.8755 -2.9899 -1.0920 28 6 4.2350 -2.2630 0.0947 29 1 -0.4850 0.8400 0.0004 30 1 4.5599 0.3805 -0.9099 31 1 2.9910 0.3502 -1.7556 32 1 4.9253 -0.2918 -3.2383 33 1 3.7002 -1.5755 -3.0918 34 1 6.2782 -1.3983 -1.4666 35 1 5.6967 -2.7693 -3.9782 36 1 6.5172 -4.6439 -5.2420 37 1 7.1470 -3.0761 -5.8201 38 1 8.4481 -4.3928 -7.2353 39 1 8.2916 -5.8366 -6.1841 40 1 10.2343 -6.9638 -4.3164 41 1 12.2985 -8.2587 -5.2935 42 1 13.4205 -6.7238 -7.1643 43 1 10.0459 -3.7250 -3.4488 44 1 9.3490 -5.3665 -3.6070 45 1 4.1091 -3.5392 -1.6389 46 1 5.6319 -3.6850 -0.7277 47 1 5.0113 -1.7878 0.6943 48 1 3.6839 -2.9773 0.7064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589751925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:30 Heat of formation + Delta-G solvation = 91.097361 kcal Electronic energy + Delta-G solvation = -28625.153380 eV Core-core repulsion = 24718.087248 eV Total energy + Delta-G solvation = -3907.066132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69485 -40.43663 -38.51285 -37.33013 -34.62870 -33.60228 -32.11396 -30.89779 -30.46775 -30.32523 -30.00790 -28.48649 -25.23939 -24.02682 -22.93439 -22.79411 -21.86497 -21.47502 -20.42449 -20.04448 -19.69524 -18.47947 -17.81228 -16.86351 -16.32285 -16.00972 -15.33431 -15.30794 -15.06930 -14.60120 -14.33174 -14.23937 -14.13522 -13.98711 -13.79927 -13.46376 -13.23740 -13.03814 -12.97270 -12.81362 -12.41920 -12.36658 -12.12113 -11.98740 -11.80131 -11.54282 -11.08095 -11.01838 -10.84498 -10.57745 -10.32846 -10.29775 -10.08090 -9.82181 -9.78805 -9.48991 -9.15801 -8.99139 -8.71827 -8.65397 -7.01213 -5.96836 -3.32731 1.47638 1.80012 2.48158 2.51642 3.10176 3.29445 3.47792 3.51022 3.62746 3.79260 4.01363 4.25068 4.32333 4.45898 4.51032 4.59286 4.64903 4.93431 5.03343 5.11037 5.13266 5.17364 5.20977 5.27360 5.31698 5.35209 5.38582 5.46368 5.63650 5.64549 5.73144 5.80186 6.01686 6.07395 6.13943 6.25860 6.29214 6.38911 6.55204 6.58687 6.62204 6.63154 6.70758 6.79382 6.95733 7.31185 7.83917 7.94059 8.31025 8.49961 8.91845 9.69900 10.07471 11.19079 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.002072 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.550208 B =13511.159309 C =13646.115969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.140 4.140 12 C 0.168 3.832 13 N -0.734 5.734 14 C 0.724 3.276 15 O -0.583 6.583 16 N -0.640 5.640 17 C 0.101 3.899 18 C -0.138 4.138 19 C 0.148 3.852 20 H 0.121 0.879 21 N -0.363 5.363 22 C 0.055 3.945 23 C -0.273 4.273 24 C 0.045 3.955 25 N -0.294 5.294 26 C 0.123 3.877 27 C -0.141 4.141 28 C 0.151 3.849 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.393 0.607 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.184 0.816 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.026 0.974 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.936 -12.949 -15.611 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.064 3.936 13 N -0.387 5.387 14 C 0.426 3.574 15 O -0.460 6.460 16 N -0.380 5.380 17 C -0.023 4.023 18 C -0.177 4.177 19 C 0.044 3.956 20 H 0.139 0.861 21 N -0.145 5.145 22 C -0.090 4.090 23 C -0.302 4.302 24 C -0.141 4.141 25 N -0.115 5.115 26 C -0.003 4.003 27 C -0.182 4.182 28 C 0.024 3.976 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.227 0.773 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.191 0.809 41 H 0.166 0.834 42 H 0.201 0.799 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.928 -11.456 -15.259 28.321 hybrid contribution 0.225 0.003 -0.127 0.258 sum 21.152 -11.453 -15.386 28.554 Atomic orbital electron populations 1.69835 1.05714 1.26548 1.53012 1.25290 0.95248 0.97574 0.99544 0.86974 0.80150 0.84688 0.77004 1.21653 1.23098 1.19470 1.18927 0.84894 0.94783 1.40104 0.89635 1.44412 1.08708 1.33317 1.46547 1.21313 0.97295 0.92043 0.89035 1.22357 0.97422 0.98375 0.99839 1.20909 0.93989 0.92695 0.85987 1.45474 1.14215 1.61246 1.17768 1.15425 0.81616 0.78060 0.82301 1.90950 1.64817 1.63669 1.26536 1.47375 1.16173 1.61218 1.13255 1.22010 0.96703 1.00546 0.83054 1.23072 0.92450 1.02069 1.00108 1.22347 0.86102 0.91132 0.96006 0.86138 1.48500 1.22727 1.13893 1.29425 1.22565 1.00134 0.87286 0.99057 1.21542 1.00700 1.03584 1.04377 1.23938 0.99815 0.91722 0.98627 1.77409 0.99578 1.22703 1.11808 1.22179 0.84075 0.99997 0.94026 1.22403 0.99349 0.98065 0.98357 1.20903 0.92323 0.91338 0.93028 0.92771 0.95410 0.90463 0.92251 0.91159 0.89846 0.77345 0.90592 0.90743 0.88725 0.89615 0.80919 0.83397 0.79932 0.89025 0.90799 0.91928 0.92228 0.95630 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.52 13.97 55.49 0.78 -26.74 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.54 16 3 Si 0.88 22.12 24.34 -169.99 -4.14 17.98 16 4 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.70 6.64 56.52 0.38 -6.33 16 7 C -0.26 -7.13 10.04 -15.06 -0.15 -7.28 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 9 N -0.61 -14.17 2.77 -172.31 -0.48 -14.64 16 10 C 0.13 2.74 4.20 -3.71 -0.02 2.72 16 11 C -0.14 -2.31 5.55 -26.61 -0.15 -2.45 16 12 C 0.17 2.67 2.41 -67.89 -0.16 2.51 16 13 N -0.73 -9.43 5.04 -58.64 -0.30 -9.72 16 14 C 0.72 10.01 8.45 -86.92 -0.73 9.27 16 15 O -0.58 -10.50 16.26 5.29 0.09 -10.41 16 16 N -0.64 -6.26 3.33 -176.22 -0.59 -6.84 16 17 C 0.10 0.63 6.15 -3.06 -0.02 0.61 16 18 C -0.14 -0.74 6.64 -24.90 -0.17 -0.91 16 19 C 0.15 1.05 4.16 -65.77 -0.27 0.77 16 20 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 21 N -0.36 -3.03 3.65 -52.77 -0.19 -3.23 16 22 C 0.06 0.39 10.58 -17.22 -0.18 0.21 16 23 C -0.27 -1.90 10.80 -40.01 -0.43 -2.34 16 24 C 0.05 0.35 12.03 -17.36 -0.21 0.14 16 25 N -0.29 -2.91 12.58 30.63 0.39 -2.53 16 26 C 0.12 1.04 6.33 -2.52 -0.02 1.02 16 27 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 28 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 31 H 0.08 1.78 4.50 -51.92 -0.23 1.55 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 35 H 0.39 4.00 7.59 -40.82 -0.31 3.69 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.17 0.83 6.96 -52.49 -0.37 0.47 16 41 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 44 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 45 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 1.31 7.93 -51.92 -0.41 0.90 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -34.72 376.97 -9.05 -43.78 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.51 Total: 1.42 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.78 Total: 5.25 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.39 Total: -63.71 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.72 -9.05 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589751925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.873 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds