Wall clock time and date at job start Tue Mar 31 2020 18:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48491 * 109.47374 * 272.91555 * 3 2 1 5 5 H 1.48496 * 109.47126 * 32.91994 * 3 2 1 6 6 H 1.48508 * 109.46801 * 152.91402 * 3 2 1 7 7 C 1.38810 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00381 * 339.35400 * 7 2 1 9 9 N 1.36939 * 119.99895 * 159.36278 * 7 2 1 10 10 C 1.46929 * 120.63179 * 332.61900 * 9 7 2 11 11 C 1.53195 * 108.77563 * 233.59326 * 10 9 7 12 12 C 1.53035 * 109.31402 * 305.36068 * 11 10 9 13 13 N 1.46495 * 109.46289 * 181.38929 * 12 11 10 14 14 C 1.34774 * 120.00240 * 154.99900 * 13 12 11 15 15 O 1.21588 * 119.99763 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00409 * 179.97438 * 14 13 12 17 17 C 1.47024 * 125.64677 * 359.69489 * 16 14 13 18 18 C 1.54328 * 107.26801 * 178.84480 * 17 16 14 19 19 C 1.55154 * 103.02018 * 338.14339 * 18 17 16 20 20 H 1.08999 * 111.00411 * 277.22819 * 19 18 17 21 21 N 1.46503 * 111.03710 * 153.38993 * 19 18 17 22 22 C 1.34947 * 126.04115 * 281.05016 * 21 19 18 23 23 C 1.35314 * 107.74708 * 179.84161 * 22 21 19 24 24 C 1.39875 * 107.92121 * 0.41803 * 23 22 21 25 25 N 1.30837 * 108.20281 * 359.74256 * 24 23 22 26 26 C 1.47420 * 125.65055 * 180.02562 * 16 14 13 27 27 C 1.53043 * 109.53770 * 61.36440 * 12 11 10 28 28 C 1.46926 * 120.63548 * 152.60314 * 9 7 2 29 29 H 0.97000 * 120.00160 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58492 * 113.79799 * 10 9 7 31 31 H 1.09007 * 109.58077 * 353.37582 * 10 9 7 32 32 H 1.09003 * 109.49186 * 185.40757 * 11 10 9 33 33 H 1.08996 * 109.50113 * 65.32012 * 11 10 9 34 34 H 1.09000 * 109.45812 * 301.36659 * 12 11 10 35 35 H 0.96999 * 119.99831 * 335.00520 * 13 12 11 36 36 H 1.08998 * 109.88532 * 298.39604 * 17 16 14 37 37 H 1.09005 * 109.87817 * 59.55581 * 17 16 14 38 38 H 1.09001 * 110.85264 * 219.67129 * 18 17 16 39 39 H 1.09001 * 110.66669 * 96.52029 * 18 17 16 40 40 H 1.08002 * 126.12619 * 359.97438 * 22 21 19 41 41 H 1.07999 * 126.04331 * 180.16126 * 23 22 21 42 42 H 1.07998 * 125.89996 * 179.76588 * 24 23 22 43 43 H 1.09000 * 110.37070 * 322.92806 * 26 16 14 44 44 H 1.08993 * 110.36897 * 85.25720 * 26 16 14 45 45 H 1.09007 * 109.49248 * 58.58962 * 27 12 11 46 46 H 1.08999 * 109.49992 * 178.68388 * 27 12 11 47 47 H 1.08994 * 109.58700 * 246.20028 * 28 9 7 48 48 H 1.09009 * 109.58423 * 6.62117 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4360 2.0820 -1.3982 5 1 1.4799 2.6340 0.7609 6 1 3.5772 1.4231 0.6375 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3288 9 7 3.3137 -1.2401 -0.4185 10 6 3.8176 -0.2583 -1.3886 11 6 4.4627 -1.0076 -2.5587 12 6 5.5293 -1.9641 -2.0208 13 7 6.1714 -2.6583 -3.1397 14 6 7.4218 -3.1426 -3.0040 15 8 8.0168 -3.0038 -1.9528 16 7 8.0123 -3.7817 -4.0332 17 6 7.4078 -4.0249 -5.3511 18 6 8.4593 -4.7599 -6.2090 19 6 9.7962 -4.3963 -5.5105 20 1 10.1560 -3.4212 -5.8388 21 7 10.8078 -5.4308 -5.7401 22 6 10.8960 -6.6124 -5.0943 23 6 11.9601 -7.2794 -5.5980 24 6 12.5481 -6.4738 -6.5788 25 7 11.8582 -5.3654 -6.6649 26 6 9.3689 -4.3587 -4.0217 27 6 4.8755 -2.9899 -1.0920 28 6 4.2350 -2.2630 0.0947 29 1 -0.4850 0.8400 0.0004 30 1 4.5599 0.3805 -0.9099 31 1 2.9910 0.3502 -1.7556 32 1 4.9253 -0.2918 -3.2383 33 1 3.7002 -1.5755 -3.0918 34 1 6.2782 -1.3983 -1.4666 35 1 5.6967 -2.7693 -3.9782 36 1 6.5172 -4.6439 -5.2420 37 1 7.1470 -3.0761 -5.8201 38 1 8.4481 -4.3928 -7.2353 39 1 8.2916 -5.8366 -6.1841 40 1 10.2343 -6.9638 -4.3164 41 1 12.2985 -8.2587 -5.2935 42 1 13.4205 -6.7238 -7.1643 43 1 10.0459 -3.7250 -3.4488 44 1 9.3490 -5.3665 -3.6070 45 1 4.1091 -3.5392 -1.6389 46 1 5.6319 -3.6850 -0.7277 47 1 5.0113 -1.7878 0.6943 48 1 3.6839 -2.9773 0.7064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589751925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:29 Heat of formation + Delta-G solvation = 67.028398 kcal Electronic energy + Delta-G solvation = -28626.197088 eV Core-core repulsion = 24718.087248 eV Total energy + Delta-G solvation = -3908.109840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27003 -41.38850 -39.66774 -38.50210 -36.07802 -34.50272 -33.81918 -31.99347 -31.85613 -31.28022 -30.79893 -29.22221 -26.82748 -25.09100 -24.39928 -23.39888 -23.36753 -22.05739 -21.24127 -21.13433 -20.81355 -19.47216 -18.68838 -18.38802 -17.61035 -16.95610 -16.79781 -16.08623 -15.95060 -15.78556 -15.68807 -15.35954 -15.03176 -14.93608 -14.77213 -14.61505 -14.46397 -14.23718 -14.07142 -13.78632 -13.63139 -13.50636 -13.43904 -12.93465 -12.69762 -12.59056 -12.53174 -12.27701 -12.02783 -12.01725 -11.79506 -11.64954 -11.56829 -11.44453 -11.30537 -10.71316 -10.39784 -10.22647 -9.66652 -9.51317 -8.96606 -8.15636 -5.47964 0.92717 1.12617 1.29731 1.43661 1.52046 1.74093 1.96075 2.06283 2.41883 2.86978 3.06292 3.13804 3.32683 3.39969 3.72469 3.76849 3.83223 3.98187 4.00275 4.11420 4.14409 4.22675 4.32184 4.44652 4.48493 4.57016 4.63154 4.65504 4.67537 4.70399 4.78832 4.86547 4.88984 4.91590 4.98069 5.02220 5.07145 5.10521 5.16501 5.17262 5.39782 5.52198 5.75234 5.87219 5.91650 6.08125 6.13380 6.75559 6.89148 6.91029 7.47663 7.61687 8.02213 9.04031 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.002072 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.550208 B =13511.159309 C =13646.115969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.312 1.312 6 H -0.266 1.266 7 C -0.247 4.247 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.126 4.126 12 C 0.179 3.821 13 N -0.721 5.721 14 C 0.721 3.279 15 O -0.630 6.630 16 N -0.634 5.634 17 C 0.097 3.903 18 C -0.125 4.125 19 C 0.153 3.847 20 H 0.116 0.884 21 N -0.371 5.371 22 C 0.049 3.951 23 C -0.280 4.280 24 C 0.040 3.960 25 N -0.334 5.334 26 C 0.123 3.877 27 C -0.127 4.127 28 C 0.147 3.853 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.194 0.806 41 H 0.167 0.833 42 H 0.206 0.794 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.028 0.972 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.676 -13.572 -17.809 31.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.228 4.228 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.241 1.241 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.166 4.166 12 C 0.074 3.926 13 N -0.376 5.376 14 C 0.423 3.577 15 O -0.511 6.511 16 N -0.373 5.373 17 C -0.025 4.025 18 C -0.164 4.164 19 C 0.049 3.951 20 H 0.134 0.866 21 N -0.153 5.153 22 C -0.096 4.096 23 C -0.309 4.309 24 C -0.146 4.146 25 N -0.155 5.155 26 C -0.002 4.002 27 C -0.167 4.167 28 C 0.021 3.979 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.211 0.789 41 H 0.185 0.815 42 H 0.223 0.777 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.715 -12.113 -17.542 31.152 hybrid contribution -0.240 0.052 0.567 0.618 sum 22.475 -12.062 -16.976 30.640 Atomic orbital electron populations 1.69958 1.07322 1.27199 1.55633 1.25881 0.95828 1.00795 1.00340 0.85964 0.78547 0.80376 0.77865 1.19429 1.24123 1.19084 1.18854 0.86537 0.93593 1.38692 0.92892 1.44515 1.07757 1.34459 1.47592 1.21381 0.96893 0.92051 0.90113 1.22155 0.97477 0.98708 0.98214 1.20549 0.93344 0.92214 0.86533 1.45076 1.14061 1.60844 1.17605 1.15512 0.81547 0.78162 0.82455 1.90922 1.65900 1.65463 1.28768 1.47288 1.16562 1.59850 1.13615 1.22267 0.97185 1.01812 0.81214 1.23021 0.90716 1.02321 1.00312 1.22259 0.86797 0.91024 0.95014 0.86599 1.48579 1.22778 1.14371 1.29568 1.23005 1.00522 0.86894 0.99191 1.21877 1.00574 1.04375 1.04079 1.24442 1.00147 0.91226 0.98758 1.77358 1.00736 1.24081 1.13283 1.22197 0.83141 0.99859 0.94997 1.22208 0.99171 0.97990 0.97355 1.21012 0.91774 0.90702 0.94397 0.92936 0.95080 0.92264 0.89220 0.90702 0.91473 0.75395 0.89201 0.89213 0.87423 0.89089 0.78932 0.81503 0.77695 0.91017 0.89864 0.91794 0.91866 0.95369 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.26 13.97 21.65 0.30 -58.96 16 2 C -0.03 -1.94 5.23 84.86 0.44 -1.50 16 3 Si 0.94 45.92 24.34 68.60 1.67 47.59 16 4 H -0.27 -12.02 6.62 99.48 0.66 -11.37 16 5 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 6 H -0.27 -12.63 6.64 99.48 0.66 -11.97 16 7 C -0.25 -13.84 10.04 84.03 0.84 -13.00 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 9 N -0.62 -28.63 2.77 -699.08 -1.94 -30.57 16 10 C 0.12 4.90 4.20 86.36 0.36 5.26 16 11 C -0.13 -3.79 5.55 30.67 0.17 -3.62 16 12 C 0.18 5.28 2.41 45.02 0.11 5.39 16 13 N -0.72 -16.52 5.04 -457.70 -2.31 -18.83 16 14 C 0.72 18.54 8.45 179.06 1.51 20.05 16 15 O -0.63 -22.17 16.26 -3.99 -0.06 -22.24 16 16 N -0.63 -10.96 3.33 -829.72 -2.76 -13.72 16 17 C 0.10 0.89 6.15 86.73 0.53 1.42 16 18 C -0.13 -0.97 6.64 31.78 0.21 -0.76 16 19 C 0.15 1.89 4.16 46.39 0.19 2.08 16 20 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 21 N -0.37 -5.62 3.65 -320.87 -1.17 -6.79 16 22 C 0.05 0.61 10.58 83.54 0.88 1.49 16 23 C -0.28 -3.37 10.80 21.99 0.24 -3.13 16 24 C 0.04 0.56 12.03 85.24 1.03 1.58 16 25 N -0.33 -6.22 12.58 -57.02 -0.72 -6.94 16 26 C 0.12 1.91 6.33 86.86 0.55 2.46 16 27 C -0.13 -4.12 5.65 30.67 0.17 -3.95 16 28 C 0.15 5.79 6.52 86.36 0.56 6.35 16 29 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.03 1.25 7.07 -2.39 -0.02 1.23 16 31 H 0.06 2.62 4.50 -2.38 -0.01 2.61 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 35 H 0.41 6.78 7.59 -92.71 -0.70 6.08 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.19 1.40 6.96 -2.91 -0.02 1.38 16 41 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.21 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 44 H 0.08 1.14 6.37 -2.39 -0.02 1.13 16 45 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 2.37 7.93 -2.38 -0.02 2.35 16 Total: -1.00 -76.93 376.97 1.00 -75.93 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.17 Total: 14.38 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 7.81 Total: 20.14 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -8.59 Total: -135.80 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.24 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -76.93 1.00 -75.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589751925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.956 kcal (2) G-P(sol) polarization free energy of solvation -76.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds