Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99679 * 2 1 4 4 H 1.48497 * 109.46594 * 240.00104 * 3 2 1 5 5 H 1.48500 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46951 * 120.00505 * 3 2 1 7 7 C 1.38807 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99843 * 163.07059 * 7 2 1 9 9 N 1.36932 * 120.00264 * 343.07653 * 7 2 1 10 10 C 1.46939 * 120.62830 * 331.83181 * 9 7 2 11 11 C 1.53192 * 108.77539 * 233.63121 * 10 9 7 12 12 C 1.53038 * 109.31333 * 305.36838 * 11 10 9 13 13 C 1.52998 * 109.45890 * 181.38875 * 12 11 10 14 14 N 1.46499 * 109.47167 * 174.97107 * 13 12 11 15 15 C 1.34776 * 120.00239 * 179.97438 * 14 13 12 16 16 O 1.21589 * 119.99906 * 359.97438 * 15 14 13 17 17 C 1.47524 * 120.00162 * 180.02562 * 15 14 13 18 18 C 1.36595 * 125.77177 * 179.97438 * 17 15 14 19 19 N 1.34811 * 106.84364 * 179.97438 * 18 17 15 20 20 C 1.46502 * 126.59802 * 180.02562 * 19 18 17 21 21 C 1.53774 * 113.61369 * 14.13118 * 20 19 18 22 22 C 1.53953 * 87.02171 * 220.05307 * 21 20 19 23 23 C 1.53786 * 87.11114 * 25.36524 * 22 21 20 24 24 N 1.40208 * 106.80940 * 359.97438 * 19 18 17 25 25 N 1.28764 * 108.36529 * 359.74723 * 24 19 18 26 26 C 1.53042 * 109.53067 * 61.36858 * 12 11 10 27 27 C 1.46921 * 120.63552 * 151.85585 * 9 7 2 28 28 H 0.96998 * 120.00471 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58131 * 113.84441 * 10 9 7 30 30 H 1.09002 * 109.69937 * 353.49149 * 10 9 7 31 31 H 1.08994 * 109.49604 * 185.40853 * 11 10 9 32 32 H 1.09002 * 109.49465 * 65.31496 * 11 10 9 33 33 H 1.09008 * 109.45624 * 301.35592 * 12 11 10 34 34 H 1.08994 * 109.47303 * 54.96874 * 13 12 11 35 35 H 1.09002 * 109.47063 * 294.96850 * 13 12 11 36 36 H 0.97009 * 120.00111 * 359.97438 * 14 13 12 37 37 H 1.08005 * 126.58134 * 359.97008 * 18 17 15 38 38 H 1.08992 * 112.84969 * 145.33480 * 20 19 18 39 39 H 1.09003 * 113.61669 * 334.57056 * 21 20 19 40 40 H 1.08999 * 113.61270 * 105.47206 * 21 20 19 41 41 H 1.09007 * 113.53401 * 270.81672 * 22 21 20 42 42 H 1.09001 * 113.74360 * 139.94422 * 22 21 20 43 43 H 1.08994 * 113.60987 * 220.09512 * 23 22 21 44 44 H 1.08996 * 113.61418 * 89.18993 * 23 22 21 45 45 H 1.08997 * 109.49204 * 58.57937 * 26 12 11 46 46 H 1.08997 * 109.49487 * 178.67567 * 26 12 11 47 47 H 1.09006 * 109.58913 * 246.15679 * 27 9 7 48 48 H 1.09001 * 109.58679 * 6.44115 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3462 10 6 0.2263 -2.3399 1.2682 11 6 0.4983 -3.3182 2.4152 12 6 0.8134 -4.7000 1.8379 13 6 1.0517 -5.6880 2.9815 14 7 1.2346 -7.0343 2.4336 15 6 1.4605 -8.0738 3.2613 16 8 1.5130 -7.8940 4.4626 17 6 1.6452 -9.4294 2.7095 18 6 1.8801 -10.5620 3.4360 19 7 1.9860 -11.5766 2.5546 20 6 2.2374 -12.9850 2.8700 21 6 2.0448 -13.3271 4.3567 22 6 3.2916 -14.2213 4.2297 23 6 3.7264 -13.3161 3.0651 24 7 1.8080 -11.0248 1.2780 25 7 1.6041 -9.7600 1.4075 26 6 2.0687 -4.6163 0.9664 27 6 1.8144 -3.6529 -0.1972 28 1 -0.4851 0.8400 0.0004 29 1 -0.6768 -2.6412 0.7373 30 1 0.0965 -1.3343 1.6685 31 1 -0.3821 -3.3831 3.0545 32 1 1.3480 -2.9659 3.0000 33 1 -0.0267 -5.0409 1.2326 34 1 0.1922 -5.6821 3.6517 35 1 1.9450 -5.3960 3.5337 36 1 1.1931 -7.1777 1.4751 37 1 1.9648 -10.6315 4.5105 38 1 1.7230 -13.6683 2.1944 39 1 2.1844 -12.4754 5.0225 40 1 1.1285 -13.8805 4.5623 41 1 3.0649 -15.2437 3.9270 42 1 3.9563 -14.1727 5.0922 43 1 4.1657 -13.8607 2.2293 44 1 4.3266 -12.4614 3.3770 45 1 2.9034 -4.2516 1.5651 46 1 2.3061 -5.6053 0.5746 47 1 1.0408 -4.0613 -0.8475 48 1 2.7336 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592769192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = 72.647889 kcal Electronic energy + Delta-G solvation = -27962.927950 eV Core-core repulsion = 24055.061789 eV Total energy + Delta-G solvation = -3907.866161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.33939 -40.68053 -39.72424 -39.24394 -36.41952 -34.60778 -34.05021 -32.63794 -31.94407 -31.34771 -28.59116 -27.05202 -26.81821 -25.90850 -24.42388 -23.72734 -23.33717 -22.55317 -21.54182 -20.72433 -20.51958 -19.37409 -18.62810 -17.49228 -17.20414 -17.07883 -16.77954 -16.51546 -16.06018 -15.74131 -15.67199 -15.29049 -15.19958 -14.91735 -14.70619 -14.17984 -14.00053 -13.85454 -13.74242 -13.51355 -13.39793 -13.24885 -12.98495 -12.91533 -12.79290 -12.53836 -12.26725 -12.05494 -12.01386 -11.84788 -11.82836 -11.62019 -11.50682 -11.38644 -11.13898 -11.11336 -11.06732 -10.51240 -10.43803 -10.03104 -8.65089 -7.85426 -5.30572 0.10672 0.58619 1.05439 1.47238 1.49790 1.56518 2.11875 2.21301 2.52784 3.07159 3.16651 3.28618 3.37971 3.62227 3.72606 3.74649 3.75807 3.85180 3.89191 3.95931 4.10411 4.15476 4.44381 4.53476 4.55690 4.59609 4.65776 4.70157 4.75202 4.77053 4.84156 4.90790 4.94326 4.96141 5.02772 5.06445 5.15781 5.28128 5.29789 5.30962 5.35830 5.44915 5.51280 5.56466 5.67506 5.80946 6.40176 6.41794 6.87716 7.10453 7.17520 7.89506 8.40933 9.20617 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.034207 B = 0.001866 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.359993 B =14999.716113 C =15251.973581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.176 3.824 11 C -0.120 4.120 12 C -0.080 4.080 13 C 0.137 3.863 14 N -0.705 5.705 15 C 0.604 3.396 16 O -0.569 6.569 17 C -0.123 4.123 18 C 0.108 3.892 19 N -0.336 5.336 20 C 0.104 3.896 21 C -0.142 4.142 22 C -0.124 4.124 23 C -0.147 4.147 24 N -0.090 5.090 25 N -0.226 5.226 26 C -0.115 4.115 27 C 0.140 3.860 28 H 0.250 0.750 29 H -0.003 1.003 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.231 0.769 38 H 0.145 0.855 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.015 0.985 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -32.393 11.000 34.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.051 3.949 11 C -0.160 4.160 12 C -0.099 4.099 13 C 0.013 3.987 14 N -0.355 5.355 15 C 0.389 3.611 16 O -0.448 6.448 17 C -0.263 4.263 18 C -0.051 4.051 19 N -0.121 5.121 20 C 0.004 3.996 21 C -0.180 4.180 22 C -0.161 4.161 23 C -0.186 4.186 24 N -0.070 5.070 25 N -0.099 5.099 26 C -0.154 4.154 27 C 0.015 3.985 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.250 0.750 37 H 0.247 0.753 38 H 0.163 0.837 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.033 0.967 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.763 -32.444 10.289 34.368 hybrid contribution 0.157 1.441 0.096 1.453 sum 4.920 -31.003 10.385 33.064 Atomic orbital electron populations 1.70176 1.06599 1.25869 1.55425 1.25791 0.96062 1.01452 1.01358 0.85359 0.77588 0.79328 0.78283 1.20186 1.21956 1.20497 1.19468 0.92762 0.86198 1.40920 0.91851 1.44321 1.36012 1.02291 1.50858 1.20589 0.87729 0.97616 0.88991 1.21968 1.01132 0.94643 0.98236 1.21156 0.98555 0.94333 0.95806 1.21389 1.01756 0.79748 0.95780 1.45831 1.71162 1.07327 1.11174 1.16913 0.76017 0.82740 0.85428 1.90778 1.53737 1.85188 1.15146 1.21449 1.18672 0.96193 0.89991 1.23624 0.95908 0.85805 0.99729 1.50894 1.46006 1.09954 1.05211 1.24053 1.00186 0.74838 1.00536 1.23564 1.01564 1.01422 0.91481 1.22740 0.96425 0.98620 0.98358 1.23471 0.93301 1.00875 1.00914 1.81920 1.22300 1.01525 1.01216 1.74626 1.10866 1.06812 1.17568 1.21916 0.97087 0.99039 0.97311 1.21051 0.97159 0.86099 0.94215 0.94124 0.98486 0.92861 0.90923 0.92797 0.90863 0.90999 0.91673 0.75038 0.75289 0.83716 0.88252 0.88019 0.87582 0.89002 0.89291 0.89992 0.92767 0.90527 0.96716 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 11.19 21.65 0.24 -55.96 16 2 C -0.05 -2.92 4.92 84.86 0.42 -2.51 16 3 Si 0.97 45.72 29.59 68.60 2.03 47.75 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.26 -14.82 9.58 84.03 0.81 -14.01 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -31.29 2.99 -699.07 -2.09 -33.38 16 10 C 0.18 8.60 5.30 86.36 0.46 9.06 16 11 C -0.12 -4.46 5.36 30.67 0.16 -4.29 16 12 C -0.08 -2.50 2.19 -10.77 -0.02 -2.52 16 13 C 0.14 3.78 5.06 86.38 0.44 4.21 16 14 N -0.70 -18.43 5.27 -466.30 -2.46 -20.89 16 15 C 0.60 16.42 7.82 86.69 0.68 17.10 16 16 O -0.57 -17.86 16.86 -4.00 -0.07 -17.93 16 17 C -0.12 -2.91 6.99 40.82 0.29 -2.63 16 18 C 0.11 1.78 10.49 83.85 0.88 2.66 16 19 N -0.34 -5.21 3.83 -324.05 -1.24 -6.45 16 20 C 0.10 0.73 5.05 45.52 0.23 0.96 16 21 C -0.14 -0.31 7.47 31.18 0.23 -0.07 16 22 C -0.12 -0.08 8.09 31.18 0.25 0.17 16 23 C -0.15 -0.75 7.88 31.12 0.25 -0.50 16 24 N -0.09 -2.09 13.78 37.02 0.51 -1.58 16 25 N -0.23 -5.83 12.04 -50.00 -0.60 -6.43 16 26 C -0.11 -3.81 5.25 30.67 0.16 -3.65 16 27 C 0.14 5.90 6.52 86.36 0.56 6.46 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.30 8.14 -2.38 -0.02 2.29 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 10.20 7.34 -92.70 -0.68 9.52 16 37 H 0.23 2.26 6.78 -2.91 -0.02 2.24 16 38 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.19 6.39 -2.39 -0.02 0.18 16 40 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.11 -0.19 8.14 -2.38 -0.02 -0.20 16 42 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.15 7.15 -2.39 -0.02 2.13 16 47 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 48 H 0.05 2.11 7.93 -2.39 -0.02 2.10 16 Total: -1.00 -73.48 386.67 2.40 -71.08 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.29 Total: 13.35 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 5.79 Total: 10.44 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -5.64 Total: -124.69 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.07 Total: -17.93 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.48 2.40 -71.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592769192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.724 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds