Wall clock time and date at job start Tue Mar 31 2020 18:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21595 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.47527 * 119.99962 * 180.02562 * 17 16 15 20 20 C 1.36596 * 125.76801 * 180.02562 * 19 17 16 21 21 N 1.34814 * 106.84320 * 179.97438 * 20 19 17 22 22 C 1.46497 * 126.60036 * 179.97438 * 21 20 19 23 23 C 1.53786 * 113.61253 * 12.49848 * 22 21 20 24 24 C 1.53780 * 87.07875 * 220.01845 * 23 22 21 25 25 C 1.53776 * 113.61481 * 275.00009 * 22 21 20 26 26 N 1.40218 * 106.80428 * 359.97438 * 21 20 19 27 27 N 1.28758 * 108.36935 * 359.75182 * 26 21 20 28 28 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 29 29 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 31 31 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 32 32 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 33 33 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 34 34 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 35 35 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 36 36 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 37 37 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 38 38 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 39 39 H 1.08003 * 126.58359 * 359.97064 * 20 19 17 40 40 H 1.09001 * 112.85003 * 143.80663 * 22 21 20 41 41 H 1.09001 * 113.60964 * 334.56525 * 23 22 21 42 42 H 1.08999 * 113.61212 * 105.47069 * 23 22 21 43 43 H 1.08997 * 113.61560 * 270.88216 * 24 23 22 44 44 H 1.08995 * 113.69059 * 139.99014 * 24 23 22 45 45 H 1.08999 * 113.61686 * 254.52845 * 25 22 21 46 46 H 1.09004 * 113.61559 * 25.34850 * 25 22 21 47 47 H 1.09004 * 109.58771 * 246.19814 * 28 9 7 48 48 H 1.08998 * 109.58854 * 6.63257 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5691 -8.1151 -0.7629 19 6 5.4468 -7.0091 -1.5995 20 6 6.0551 -8.0628 -2.2205 21 7 7.1890 -7.5883 -2.7741 22 6 8.1717 -8.3543 -3.5447 23 6 7.6770 -9.7501 -3.9592 24 6 9.0913 -10.2607 -3.6373 25 6 9.2165 -9.0699 -2.6723 26 7 7.2470 -6.2207 -2.4704 27 7 6.2027 -5.9131 -1.7828 28 6 1.8152 -3.6539 -0.1863 29 1 -0.4850 0.8399 -0.0004 30 1 0.1001 -1.3265 1.6691 31 1 -0.6743 -2.6384 0.7459 32 1 1.3517 -2.9480 3.0109 33 1 -0.3776 -3.3672 3.0687 34 1 0.9907 -5.3887 2.6790 35 1 -0.0199 -5.0363 1.2570 36 1 2.5016 -6.7021 1.2763 37 1 1.6148 -6.3325 -0.2222 38 1 4.1561 -5.1085 -0.3666 39 1 5.6965 -9.0808 -2.2603 40 1 8.6057 -7.7820 -4.3646 41 1 6.9069 -10.1535 -3.3016 42 1 7.4155 -9.8250 -5.0147 43 1 9.7767 -10.2109 -4.4834 44 1 9.1041 -11.2299 -3.1387 45 1 10.1978 -8.5957 -2.6888 46 1 8.8678 -9.2861 -1.6624 47 1 1.0392 -4.0654 -0.8318 48 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592945131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:04 Heat of formation + Delta-G solvation = 94.645892 kcal Electronic energy + Delta-G solvation = -28238.227199 eV Core-core repulsion = 24331.314942 eV Total energy + Delta-G solvation = -3906.912256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46880 -39.63182 -39.10986 -37.67034 -34.79377 -33.46403 -32.86898 -31.25418 -30.38244 -30.11483 -26.74934 -26.48559 -25.52924 -25.19455 -23.29674 -22.63780 -22.01437 -20.92799 -20.43423 -20.11182 -19.14012 -18.38734 -16.81311 -16.52426 -16.39633 -15.91392 -15.88049 -15.05968 -14.93629 -14.76175 -14.15269 -14.10460 -13.61391 -13.59836 -13.37807 -13.26759 -13.12907 -12.72929 -12.54229 -12.27933 -12.24674 -12.16601 -12.11559 -11.51726 -11.40655 -11.23123 -11.11236 -10.96891 -10.65229 -10.48764 -10.43607 -10.21152 -10.14889 -10.08702 -9.85067 -9.52699 -9.46564 -9.36047 -8.84984 -8.40964 -6.61755 -5.73926 -3.15882 0.93741 1.64132 1.75523 3.22683 3.31847 3.41364 3.48462 3.51625 3.51719 3.70543 3.99646 4.03921 4.06122 4.50146 4.53934 4.62203 4.81212 4.88212 4.93492 5.05984 5.15366 5.15851 5.21682 5.27886 5.35254 5.49242 5.51382 5.54497 5.65752 5.69293 5.87577 5.99645 6.05350 6.14726 6.29875 6.37718 6.42281 6.55269 6.65974 6.75213 6.84260 6.91088 7.02750 7.44950 7.55548 7.72531 7.85136 7.86372 8.25749 8.50007 9.26484 9.90010 10.46651 11.34431 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.002388 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.990067 B =11722.340932 C =13143.840511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.075 0.925 15 C 0.127 3.873 16 N -0.706 5.706 17 C 0.602 3.398 18 O -0.548 6.548 19 C -0.098 4.098 20 C 0.090 3.910 21 N -0.352 5.352 22 C 0.121 3.879 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.145 4.145 26 N -0.064 5.064 27 N -0.201 5.201 28 C 0.153 3.847 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.412 0.588 39 H 0.201 0.799 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.019 0.981 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.667 -22.122 -5.015 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.004 3.996 16 N -0.356 5.356 17 C 0.386 3.614 18 O -0.425 6.425 19 C -0.238 4.238 20 C -0.067 4.067 21 N -0.137 5.137 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.173 4.173 25 C -0.184 4.184 26 N -0.044 5.044 27 N -0.074 5.074 28 C 0.026 3.974 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.218 0.782 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.037 0.963 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.929 -21.385 -5.120 27.153 hybrid contribution 0.162 0.377 -0.088 0.420 sum 16.092 -21.008 -5.208 26.970 Atomic orbital electron populations 1.70041 1.05261 1.25400 1.54042 1.25031 0.95264 0.98399 1.01036 0.86306 0.79270 0.83790 0.77593 1.21506 1.21624 1.20387 1.19191 0.92724 0.84837 1.41276 0.91643 1.44059 1.35985 1.01280 1.50026 1.20795 0.88527 0.98405 0.87980 1.22168 1.00073 0.95966 0.99859 1.21337 0.96711 0.97734 0.97927 1.22040 0.98874 0.93495 0.99494 0.90711 1.21528 0.84400 0.98242 0.95443 1.45888 1.24588 1.11583 1.53528 1.16737 0.82271 0.84151 0.78237 1.90784 1.60165 1.29915 1.61665 1.21529 1.01141 0.90203 1.10890 1.23200 0.87325 1.01396 0.94774 1.50586 1.16732 1.09297 1.37074 1.23436 0.88926 0.90660 0.94993 1.23477 0.98837 0.92592 1.03668 1.22712 0.96153 0.98667 0.99815 1.23446 0.99434 0.96302 0.99207 1.82028 1.16239 0.89682 1.16418 1.74699 0.99741 1.24236 1.08745 1.21006 0.97598 0.86799 0.92024 0.93717 0.89568 0.96479 0.92735 0.93218 0.93438 0.92467 0.91717 0.91304 0.75210 0.78196 0.84806 0.88507 0.89255 0.88978 0.89740 0.89585 0.88973 0.96311 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 11.19 55.49 0.62 -25.91 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.90 2.99 -172.06 -0.51 -15.41 16 10 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 11 C -0.14 -2.70 6.08 -26.61 -0.16 -2.87 16 12 C -0.10 -1.65 5.16 -26.69 -0.14 -1.79 16 13 C -0.12 -2.02 2.39 -90.27 -0.22 -2.23 16 14 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.13 1.93 5.06 -4.05 -0.02 1.90 16 16 N -0.71 -10.60 5.33 -61.35 -0.33 -10.93 16 17 C 0.60 9.12 7.82 -12.48 -0.10 9.02 16 18 O -0.55 -9.24 16.86 5.28 0.09 -9.16 16 19 C -0.10 -1.33 6.99 -83.55 -0.58 -1.91 16 20 C 0.09 0.91 10.49 -16.83 -0.18 0.73 16 21 N -0.35 -3.37 3.83 -53.77 -0.21 -3.58 16 22 C 0.12 0.66 5.06 -67.12 -0.34 0.32 16 23 C -0.15 -0.48 7.44 -25.92 -0.19 -0.68 16 24 C -0.14 -0.32 8.08 -25.92 -0.21 -0.53 16 25 C -0.15 -0.61 7.88 -25.92 -0.20 -0.82 16 26 N -0.06 -0.86 13.78 60.35 0.83 -0.02 16 27 N -0.20 -2.97 12.04 32.85 0.40 -2.57 16 28 C 0.15 3.20 5.63 -3.48 -0.02 3.18 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.41 6.20 7.41 -40.82 -0.30 5.90 16 39 H 0.20 1.41 6.78 -52.48 -0.36 1.05 16 40 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.31 6.39 -51.93 -0.33 -0.02 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 1.09 7.16 -51.93 -0.37 0.72 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -33.53 386.91 -8.48 -42.02 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.57 Total: 1.50 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.61 Total: 1.22 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.80 Total: -58.42 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.53 -8.48 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592945131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.662 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds