Wall clock time and date at job start Tue Mar 31 2020 18:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21595 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.47527 * 119.99962 * 180.02562 * 17 16 15 20 20 C 1.36596 * 125.76801 * 180.02562 * 19 17 16 21 21 N 1.34814 * 106.84320 * 179.97438 * 20 19 17 22 22 C 1.46497 * 126.60036 * 179.97438 * 21 20 19 23 23 C 1.53786 * 113.61253 * 12.49848 * 22 21 20 24 24 C 1.53780 * 87.07875 * 220.01845 * 23 22 21 25 25 C 1.53776 * 113.61481 * 275.00009 * 22 21 20 26 26 N 1.40218 * 106.80428 * 359.97438 * 21 20 19 27 27 N 1.28758 * 108.36935 * 359.75182 * 26 21 20 28 28 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 29 29 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 31 31 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 32 32 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 33 33 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 34 34 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 35 35 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 36 36 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 37 37 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 38 38 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 39 39 H 1.08003 * 126.58359 * 359.97064 * 20 19 17 40 40 H 1.09001 * 112.85003 * 143.80663 * 22 21 20 41 41 H 1.09001 * 113.60964 * 334.56525 * 23 22 21 42 42 H 1.08999 * 113.61212 * 105.47069 * 23 22 21 43 43 H 1.08997 * 113.61560 * 270.88216 * 24 23 22 44 44 H 1.08995 * 113.69059 * 139.99014 * 24 23 22 45 45 H 1.08999 * 113.61686 * 254.52845 * 25 22 21 46 46 H 1.09004 * 113.61559 * 25.34850 * 25 22 21 47 47 H 1.09004 * 109.58771 * 246.19814 * 28 9 7 48 48 H 1.08998 * 109.58854 * 6.63257 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5691 -8.1151 -0.7629 19 6 5.4468 -7.0091 -1.5995 20 6 6.0551 -8.0628 -2.2205 21 7 7.1890 -7.5883 -2.7741 22 6 8.1717 -8.3543 -3.5447 23 6 7.6770 -9.7501 -3.9592 24 6 9.0913 -10.2607 -3.6373 25 6 9.2165 -9.0699 -2.6723 26 7 7.2470 -6.2207 -2.4704 27 7 6.2027 -5.9131 -1.7828 28 6 1.8152 -3.6539 -0.1863 29 1 -0.4850 0.8399 -0.0004 30 1 0.1001 -1.3265 1.6691 31 1 -0.6743 -2.6384 0.7459 32 1 1.3517 -2.9480 3.0109 33 1 -0.3776 -3.3672 3.0687 34 1 0.9907 -5.3887 2.6790 35 1 -0.0199 -5.0363 1.2570 36 1 2.5016 -6.7021 1.2763 37 1 1.6148 -6.3325 -0.2222 38 1 4.1561 -5.1085 -0.3666 39 1 5.6965 -9.0808 -2.2603 40 1 8.6057 -7.7820 -4.3646 41 1 6.9069 -10.1535 -3.3016 42 1 7.4155 -9.8250 -5.0147 43 1 9.7767 -10.2109 -4.4834 44 1 9.1041 -11.2299 -3.1387 45 1 10.1978 -8.5957 -2.6888 46 1 8.8678 -9.2861 -1.6624 47 1 1.0392 -4.0654 -0.8318 48 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592945131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:03 Heat of formation + Delta-G solvation = 72.421937 kcal Electronic energy + Delta-G solvation = -28239.190902 eV Core-core repulsion = 24331.314942 eV Total energy + Delta-G solvation = -3907.875959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.33920 -40.65926 -39.73218 -39.23262 -36.27483 -34.73634 -34.11302 -32.40446 -32.26137 -31.51036 -27.57308 -27.20450 -26.81608 -26.56317 -24.42780 -23.75530 -23.33961 -22.44190 -21.54370 -20.70463 -20.50129 -19.31508 -18.62463 -17.47039 -17.22406 -17.04707 -16.80894 -16.55342 -16.18655 -15.78615 -15.69625 -15.32399 -15.10056 -14.97178 -14.49871 -14.19342 -13.99382 -13.79530 -13.72517 -13.55328 -13.48821 -13.23350 -13.00396 -12.91766 -12.87433 -12.49630 -12.26469 -12.05218 -11.96965 -11.84624 -11.80919 -11.57271 -11.50760 -11.42760 -11.14515 -11.13228 -11.05104 -10.52816 -10.43293 -10.02344 -8.66605 -7.86687 -5.31685 0.11029 0.58656 1.06268 1.45688 1.46984 1.57539 2.13477 2.21902 2.51326 3.06374 3.17369 3.27472 3.38139 3.59014 3.64463 3.74937 3.75693 3.88437 4.00274 4.02948 4.09821 4.15994 4.42930 4.44700 4.58018 4.58969 4.62536 4.68777 4.76020 4.78916 4.90067 4.90667 4.92284 4.94416 5.03015 5.06345 5.13108 5.23316 5.28416 5.35047 5.39462 5.47560 5.51658 5.58428 5.68189 5.80744 6.38119 6.41254 6.87365 7.09791 7.15984 7.87497 8.38742 9.19275 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.002388 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.990067 B =11722.340932 C =13143.840511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.101 4.101 14 H 0.073 0.927 15 C 0.137 3.863 16 N -0.708 5.708 17 C 0.605 3.395 18 O -0.567 6.567 19 C -0.124 4.124 20 C 0.109 3.891 21 N -0.336 5.336 22 C 0.101 3.899 23 C -0.141 4.141 24 C -0.122 4.122 25 C -0.146 4.146 26 N -0.093 5.093 27 N -0.230 5.230 28 C 0.151 3.849 29 H 0.249 0.751 30 H 0.051 0.949 31 H -0.006 1.006 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.410 0.590 39 H 0.234 0.766 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.009 0.991 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.250 -24.647 -5.002 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.122 4.122 14 H 0.091 0.909 15 C 0.014 3.986 16 N -0.358 5.358 17 C 0.390 3.610 18 O -0.446 6.446 19 C -0.265 4.265 20 C -0.049 4.049 21 N -0.120 5.120 22 C 0.002 3.998 23 C -0.180 4.180 24 C -0.160 4.160 25 C -0.184 4.184 26 N -0.072 5.072 27 N -0.103 5.103 28 C 0.026 3.974 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.012 0.988 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.246 0.754 39 H 0.250 0.750 40 H 0.161 0.839 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.027 0.973 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.557 -23.929 -5.117 30.117 hybrid contribution -0.268 1.074 -0.185 1.123 sum 17.289 -22.854 -5.302 29.144 Atomic orbital electron populations 1.70191 1.06617 1.25769 1.55506 1.25779 0.96044 1.01459 1.01447 0.85301 0.78263 0.79792 0.77355 1.21417 1.21695 1.19482 1.19497 0.92919 0.86139 1.40542 0.91764 1.44326 1.36088 1.02068 1.50786 1.20652 0.87562 0.97917 0.89189 1.22002 1.00971 0.96003 0.97954 1.21332 0.96314 0.96765 0.98901 1.21802 0.99199 0.93483 0.97709 0.90899 1.21398 0.84419 0.96934 0.95868 1.45910 1.24544 1.11692 1.53672 1.16884 0.82583 0.83676 0.77864 1.90762 1.60916 1.30381 1.62552 1.21514 1.01197 0.91215 1.12546 1.23641 0.86579 1.01879 0.92834 1.50916 1.16884 1.08257 1.35980 1.24072 0.89031 0.91362 0.95371 1.23536 0.99549 0.90436 1.04454 1.22701 0.95644 0.98101 0.99567 1.23465 0.98931 0.97061 0.98984 1.81930 1.16212 0.91886 1.17167 1.74662 1.00478 1.25386 1.09736 1.21111 0.96811 0.85946 0.93562 0.94144 0.93037 0.98752 0.93003 0.90983 0.89791 0.92280 0.89982 0.91634 0.75375 0.74991 0.83943 0.88094 0.88102 0.87631 0.88828 0.89368 0.89881 0.97292 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 11.19 21.65 0.24 -56.41 16 2 C -0.05 -2.99 4.91 84.86 0.42 -2.58 16 3 Si 0.96 46.21 29.59 68.60 2.03 48.24 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.26 -14.77 9.58 84.03 0.81 -13.96 16 8 H 0.06 3.57 7.89 -2.92 -0.02 3.55 16 9 N -0.61 -31.37 2.99 -698.26 -2.09 -33.45 16 10 C 0.17 8.48 5.31 86.36 0.46 8.94 16 11 C -0.13 -4.83 6.08 30.67 0.19 -4.65 16 12 C -0.10 -2.96 5.16 30.62 0.16 -2.80 16 13 C -0.10 -3.33 2.39 -10.57 -0.03 -3.36 16 14 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 15 C 0.14 3.93 5.06 86.38 0.44 4.37 16 16 N -0.71 -20.87 5.33 -466.28 -2.48 -23.35 16 17 C 0.60 17.86 7.82 86.69 0.68 18.54 16 18 O -0.57 -18.36 16.86 -4.02 -0.07 -18.43 16 19 C -0.12 -3.31 6.99 40.82 0.29 -3.02 16 20 C 0.11 2.03 10.49 83.85 0.88 2.91 16 21 N -0.34 -6.01 3.83 -324.04 -1.24 -7.25 16 22 C 0.10 0.91 5.06 45.52 0.23 1.14 16 23 C -0.14 -0.51 7.44 31.12 0.23 -0.27 16 24 C -0.12 -0.21 8.08 31.12 0.25 0.04 16 25 C -0.15 -0.94 7.88 31.12 0.25 -0.69 16 26 N -0.09 -2.46 13.78 37.02 0.51 -1.95 16 27 N -0.23 -6.85 12.04 -49.99 -0.60 -7.45 16 28 C 0.15 6.41 5.63 86.51 0.49 6.89 16 29 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.05 2.87 6.04 -2.39 -0.01 2.86 16 31 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.41 12.41 7.41 -92.70 -0.69 11.73 16 39 H 0.23 2.60 6.78 -2.91 -0.02 2.58 16 40 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 0.31 6.39 -2.39 -0.02 0.29 16 42 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.05 2.05 7.16 -2.39 -0.02 2.03 16 Total: -1.00 -74.70 386.91 2.31 -72.39 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.28 Total: 16.16 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.73 Total: 11.51 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -5.66 Total: -129.87 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.07 Total: -18.43 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.70 2.31 -72.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592945131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.815 kcal (2) G-P(sol) polarization free energy of solvation -74.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds