Wall clock time and date at job start Tue Mar 31 2020 17:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47057 * 2 1 4 4 C 1.46494 * 120.00240 * 274.99918 * 3 2 1 5 5 C 1.50704 * 109.47444 * 275.00286 * 4 3 2 6 6 H 1.07997 * 119.99422 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99899 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99711 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00280 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46914 * 90.00352 * 9 7 5 11 11 H 1.48497 * 109.47085 * 210.00541 * 9 7 5 12 12 H 1.48503 * 109.46980 * 330.00506 * 9 7 5 13 13 S 1.65605 * 119.99743 * 95.00268 * 3 2 1 14 14 O 1.42108 * 106.40091 * 156.45949 * 13 3 2 15 15 O 1.42093 * 106.40445 * 23.54116 * 13 3 2 16 16 N 1.65604 * 107.21619 * 269.99639 * 13 3 2 17 17 C 1.46499 * 119.99913 * 270.00107 * 16 13 3 18 18 C 1.46498 * 119.99688 * 90.00535 * 16 13 3 19 19 C 1.53004 * 109.47369 * 94.99740 * 18 16 13 20 20 N 1.46898 * 109.46850 * 180.02562 * 19 18 16 21 21 C 1.46845 * 111.00565 * 45.79157 * 20 19 18 22 22 C 1.53034 * 109.52676 * 185.84030 * 21 20 19 23 23 C 1.53126 * 109.27454 * 300.81918 * 22 21 20 24 24 C 1.53119 * 109.16048 * 57.65518 * 23 22 21 25 25 C 1.46850 * 110.99813 * 170.00223 * 20 19 18 26 26 H 1.09008 * 109.47042 * 300.00062 * 1 2 3 27 27 H 1.08997 * 109.47295 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46886 * 240.00331 * 2 1 3 30 30 H 1.09005 * 109.47275 * 120.00139 * 2 1 3 31 31 H 1.09006 * 109.47340 * 35.00349 * 4 3 2 32 32 H 1.09005 * 109.47593 * 154.99931 * 4 3 2 33 33 H 0.96998 * 119.99438 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.46899 * 269.99890 * 17 16 13 35 35 H 1.09000 * 109.47475 * 30.00223 * 17 16 13 36 36 H 1.09004 * 109.46801 * 150.00465 * 17 16 13 37 37 H 1.09006 * 109.47054 * 334.99690 * 18 16 13 38 38 H 1.08999 * 109.46804 * 215.00099 * 18 16 13 39 39 H 1.08995 * 109.46637 * 59.99753 * 19 18 16 40 40 H 1.09001 * 109.46762 * 299.99710 * 19 18 16 41 41 H 1.08995 * 109.46315 * 65.81881 * 21 20 19 42 42 H 1.09005 * 109.45975 * 305.85394 * 21 20 19 43 43 H 1.08997 * 109.50792 * 180.88024 * 22 21 20 44 44 H 1.09006 * 109.50471 * 60.75677 * 22 21 20 45 45 H 1.08999 * 109.52028 * 177.55723 * 23 22 21 46 46 H 1.08993 * 109.52259 * 297.74866 * 23 22 21 47 47 H 1.09004 * 109.50440 * 62.28501 * 24 23 22 48 48 H 1.09003 * 109.50154 * 182.40625 * 24 23 22 49 49 H 1.09005 * 109.46186 * 54.13967 * 25 20 19 50 50 H 1.08998 * 109.46012 * 294.17361 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4948 1.7889 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8529 2.3615 -3.0843 8 7 5.0190 2.0820 -3.6243 9 14 2.6811 3.5333 -3.9466 10 1 2.9449 4.9217 -3.4905 11 1 2.8863 3.4471 -5.4148 12 1 1.2808 3.1625 -3.6198 13 16 2.4122 2.1202 1.4288 14 8 3.3284 3.1570 1.1050 15 8 2.7096 1.0799 2.3499 16 7 1.0431 2.8642 1.9895 17 6 0.7517 4.2476 1.6056 18 6 0.1235 2.1389 2.8695 19 6 0.4548 2.4588 4.3286 20 7 -0.4670 1.7311 5.2109 21 6 -0.6056 0.3316 4.7882 22 6 -1.6788 -0.3549 5.6360 23 6 -1.2777 -0.2855 7.1122 24 6 -1.0927 1.1803 7.5143 25 6 -0.0365 1.8223 6.6120 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1803 -1.0756 33 1 5.2708 2.4846 -4.4701 34 1 1.1986 4.9277 2.3309 35 1 1.1672 4.4458 0.6176 36 1 -0.3276 4.3987 1.5830 37 1 0.2275 1.0672 2.6999 38 1 -0.9009 2.4430 2.6545 39 1 0.3508 3.5305 4.4982 40 1 1.4792 2.1546 4.5436 41 1 0.3459 -0.1835 4.9198 42 1 -0.8951 0.2966 3.7379 43 1 -1.7704 -1.3978 5.3325 44 1 -2.6337 0.1513 5.4942 45 1 -2.0601 -0.7350 7.7237 46 1 -0.3424 -0.8250 7.2613 47 1 -2.0384 1.7106 7.4020 48 1 -0.7656 1.2343 8.5527 49 1 0.0873 2.8700 6.8864 50 1 0.9123 1.3002 6.7351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593665480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:17 Heat of formation + Delta-G solvation = -71.005854 kcal Electronic energy + Delta-G solvation = -29044.311667 eV Core-core repulsion = 25233.367412 eV Total energy + Delta-G solvation = -3810.944255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.35430 -36.82869 -36.46763 -36.18876 -35.24041 -33.60911 -32.61091 -31.13886 -30.32590 -28.92566 -27.17076 -26.01177 -24.22465 -23.20852 -22.94339 -21.55439 -21.49834 -19.88488 -18.39059 -17.48217 -17.02320 -16.77909 -16.41942 -15.87360 -15.16135 -15.08016 -14.68977 -14.61388 -14.24202 -14.04922 -13.86720 -13.66265 -13.39997 -13.29464 -13.05477 -12.80075 -12.60253 -12.49337 -12.33025 -12.15059 -11.99303 -11.90215 -11.52764 -11.47499 -11.41219 -11.29599 -11.14245 -11.09927 -10.98173 -10.86250 -10.58408 -10.52488 -10.49198 -10.39088 -10.21633 -9.56997 -8.99257 -8.60482 -8.47772 -8.15548 -6.09483 -4.08865 1.05966 3.24370 3.28339 3.30465 3.34178 3.72445 4.02571 4.36714 4.56607 4.59339 4.68224 4.77739 4.82734 4.88970 5.09256 5.15283 5.19442 5.24732 5.25350 5.30544 5.41964 5.42763 5.50188 5.55561 5.58731 5.62995 5.66014 5.68551 5.71629 5.75270 5.84589 5.87282 5.88354 5.92097 5.92995 6.11595 6.15231 6.17891 6.42519 6.48523 6.59855 6.73124 6.90259 6.92965 7.08142 7.39268 7.56637 8.47737 8.95292 9.49412 11.04148 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.003253 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.617562 B = 8604.792339 C = 8881.768689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.115 3.885 3 N -0.985 5.985 4 C 0.229 3.771 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.777 3.223 14 O -0.959 6.959 15 O -0.990 6.990 16 N -1.015 6.015 17 C 0.096 3.904 18 C 0.124 3.876 19 C 0.034 3.966 20 N -0.534 5.534 21 C 0.042 3.958 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.115 4.115 25 C 0.054 3.946 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 -1.687 17.719 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.011 4.011 3 N -0.826 5.826 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.785 3.215 14 O -0.942 6.942 15 O -0.974 6.974 16 N -0.854 5.854 17 C -0.050 4.050 18 C -0.002 4.002 19 C -0.095 4.095 20 N -0.259 5.259 21 C -0.086 4.086 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.153 4.153 25 C -0.074 4.074 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.158 -1.398 17.918 24.168 hybrid contribution -0.002 0.347 -0.742 0.819 sum -16.160 -1.051 17.176 23.606 Atomic orbital electron populations 1.22311 0.97213 1.01649 1.02003 1.21192 0.92967 0.82965 1.03992 1.57566 1.81082 1.21502 1.22433 1.19416 0.98257 0.90782 0.81030 1.21370 1.00831 1.28943 1.05912 0.90466 1.24872 0.95076 0.96083 0.96928 1.69898 1.20561 1.43957 1.18889 0.86932 0.81820 0.82220 0.79232 1.19763 1.20938 1.18922 1.02214 0.73203 0.73220 0.72822 1.93635 1.58972 1.57616 1.83990 1.93520 1.83106 1.57698 1.63100 1.58209 1.43400 1.22636 1.61115 1.21448 1.01706 0.81110 1.00719 1.21387 0.94214 0.96324 0.88292 1.22588 0.94886 0.99388 0.92654 1.62015 1.48646 1.13036 1.02248 1.22277 0.98416 0.88082 0.99808 1.21589 0.99104 1.00026 0.94670 1.21593 1.01334 0.96614 0.96515 1.21572 0.99690 0.95860 0.98183 1.22098 0.96533 1.00819 0.87987 0.93347 0.92016 0.91930 0.89346 0.90393 0.94854 0.95572 0.92510 0.92754 0.90807 0.91265 0.89963 0.89814 0.90181 0.93839 0.94205 0.90118 0.91527 0.91149 0.91940 0.92252 0.91132 0.91706 0.90814 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.12 1.94 6.40 -4.04 -0.03 1.91 16 3 N -0.99 -19.82 2.82 -115.66 -0.33 -20.15 16 4 C 0.23 5.31 4.17 -5.19 -0.02 5.29 16 5 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 13 S 2.78 54.93 5.97 -107.50 -0.64 54.29 16 14 O -0.96 -22.86 16.18 -57.17 -0.93 -23.79 16 15 O -0.99 -20.34 15.66 -57.17 -0.90 -21.23 16 16 N -1.02 -14.95 3.24 -121.75 -0.39 -15.34 16 17 C 0.10 1.22 10.33 59.85 0.62 1.84 16 18 C 0.12 1.51 3.94 -4.04 -0.02 1.50 16 19 C 0.03 0.41 5.60 -3.82 -0.02 0.39 16 20 N -0.53 -5.69 4.81 -234.67 -1.13 -6.81 16 21 C 0.04 0.43 4.85 -3.84 -0.02 0.41 16 22 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 23 C -0.12 -0.95 6.00 -26.60 -0.16 -1.11 16 24 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 25 C 0.05 0.51 5.42 -3.83 -0.02 0.49 16 26 H 0.05 0.57 6.08 -51.92 -0.32 0.25 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 30 H 0.08 1.26 6.92 -51.93 -0.36 0.90 16 31 H 0.03 0.74 7.17 -51.93 -0.37 0.36 16 32 H 0.03 0.61 6.69 -51.93 -0.35 0.26 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.04 7.44 -51.93 -0.39 0.66 16 36 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 37 H 0.08 1.02 4.43 -51.93 -0.23 0.79 16 38 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.79 5.81 -51.93 -0.30 0.49 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 50 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -33.91 394.22 -11.38 -45.29 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -9.06 Total: -0.93 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.05 Total: -6.75 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.08 Total: -69.01 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.82 Total: -45.02 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.64 Total: 54.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.91 -11.38 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593665480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.713 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds