Wall clock time and date at job start Tue Mar 31 2020 17:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47057 * 2 1 4 4 C 1.46494 * 120.00240 * 274.99918 * 3 2 1 5 5 C 1.50704 * 109.47444 * 275.00286 * 4 3 2 6 6 H 1.07997 * 119.99422 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99899 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99711 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00280 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46914 * 90.00352 * 9 7 5 11 11 H 1.48497 * 109.47085 * 210.00541 * 9 7 5 12 12 H 1.48503 * 109.46980 * 330.00506 * 9 7 5 13 13 S 1.65605 * 119.99743 * 95.00268 * 3 2 1 14 14 O 1.42108 * 106.40091 * 156.45949 * 13 3 2 15 15 O 1.42093 * 106.40445 * 23.54116 * 13 3 2 16 16 N 1.65604 * 107.21619 * 269.99639 * 13 3 2 17 17 C 1.46499 * 119.99913 * 270.00107 * 16 13 3 18 18 C 1.46498 * 119.99688 * 90.00535 * 16 13 3 19 19 C 1.53004 * 109.47369 * 94.99740 * 18 16 13 20 20 N 1.46898 * 109.46850 * 180.02562 * 19 18 16 21 21 C 1.46845 * 111.00565 * 45.79157 * 20 19 18 22 22 C 1.53034 * 109.52676 * 185.84030 * 21 20 19 23 23 C 1.53126 * 109.27454 * 300.81918 * 22 21 20 24 24 C 1.53119 * 109.16048 * 57.65518 * 23 22 21 25 25 C 1.46850 * 110.99813 * 170.00223 * 20 19 18 26 26 H 1.09008 * 109.47042 * 300.00062 * 1 2 3 27 27 H 1.08997 * 109.47295 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46886 * 240.00331 * 2 1 3 30 30 H 1.09005 * 109.47275 * 120.00139 * 2 1 3 31 31 H 1.09006 * 109.47340 * 35.00349 * 4 3 2 32 32 H 1.09005 * 109.47593 * 154.99931 * 4 3 2 33 33 H 0.96998 * 119.99438 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.46899 * 269.99890 * 17 16 13 35 35 H 1.09000 * 109.47475 * 30.00223 * 17 16 13 36 36 H 1.09004 * 109.46801 * 150.00465 * 17 16 13 37 37 H 1.09006 * 109.47054 * 334.99690 * 18 16 13 38 38 H 1.08999 * 109.46804 * 215.00099 * 18 16 13 39 39 H 1.08995 * 109.46637 * 59.99753 * 19 18 16 40 40 H 1.09001 * 109.46762 * 299.99710 * 19 18 16 41 41 H 1.08995 * 109.46315 * 65.81881 * 21 20 19 42 42 H 1.09005 * 109.45975 * 305.85394 * 21 20 19 43 43 H 1.08997 * 109.50792 * 180.88024 * 22 21 20 44 44 H 1.09006 * 109.50471 * 60.75677 * 22 21 20 45 45 H 1.08999 * 109.52028 * 177.55723 * 23 22 21 46 46 H 1.08993 * 109.52259 * 297.74866 * 23 22 21 47 47 H 1.09004 * 109.50440 * 62.28501 * 24 23 22 48 48 H 1.09003 * 109.50154 * 182.40625 * 24 23 22 49 49 H 1.09005 * 109.46186 * 54.13967 * 25 20 19 50 50 H 1.08998 * 109.46012 * 294.17361 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4948 1.7889 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8529 2.3615 -3.0843 8 7 5.0190 2.0820 -3.6243 9 14 2.6811 3.5333 -3.9466 10 1 2.9449 4.9217 -3.4905 11 1 2.8863 3.4471 -5.4148 12 1 1.2808 3.1625 -3.6198 13 16 2.4122 2.1202 1.4288 14 8 3.3284 3.1570 1.1050 15 8 2.7096 1.0799 2.3499 16 7 1.0431 2.8642 1.9895 17 6 0.7517 4.2476 1.6056 18 6 0.1235 2.1389 2.8695 19 6 0.4548 2.4588 4.3286 20 7 -0.4670 1.7311 5.2109 21 6 -0.6056 0.3316 4.7882 22 6 -1.6788 -0.3549 5.6360 23 6 -1.2777 -0.2855 7.1122 24 6 -1.0927 1.1803 7.5143 25 6 -0.0365 1.8223 6.6120 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1803 -1.0756 33 1 5.2708 2.4846 -4.4701 34 1 1.1986 4.9277 2.3309 35 1 1.1672 4.4458 0.6176 36 1 -0.3276 4.3987 1.5830 37 1 0.2275 1.0672 2.6999 38 1 -0.9009 2.4430 2.6545 39 1 0.3508 3.5305 4.4982 40 1 1.4792 2.1546 4.5436 41 1 0.3459 -0.1835 4.9198 42 1 -0.8951 0.2966 3.7379 43 1 -1.7704 -1.3978 5.3325 44 1 -2.6337 0.1513 5.4942 45 1 -2.0601 -0.7350 7.7237 46 1 -0.3424 -0.8250 7.2613 47 1 -2.0384 1.7106 7.4020 48 1 -0.7656 1.2343 8.5527 49 1 0.0873 2.8700 6.8864 50 1 0.9123 1.3002 6.7351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593665480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:16 Heat of formation + Delta-G solvation = -96.445729 kcal Electronic energy + Delta-G solvation = -29045.414823 eV Core-core repulsion = 25233.367412 eV Total energy + Delta-G solvation = -3812.047410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.15156 -38.45080 -37.80805 -37.49767 -36.92157 -34.69884 -34.42521 -31.91805 -31.79529 -29.84892 -28.96635 -27.00229 -25.12398 -24.63103 -23.92714 -23.15634 -22.41544 -20.60182 -19.81755 -19.20641 -18.64375 -18.45742 -17.62092 -17.10713 -16.43928 -16.06286 -15.98055 -15.66742 -15.40406 -15.18838 -15.04332 -14.74441 -14.57886 -14.45204 -14.25561 -14.10203 -13.87848 -13.82562 -13.58336 -13.53467 -13.16274 -13.12538 -13.07298 -12.90032 -12.76840 -12.59957 -12.48802 -12.17425 -12.13777 -12.08488 -11.96199 -11.72403 -11.66864 -11.55223 -11.24856 -11.21635 -10.79165 -10.12827 -9.81088 -9.35466 -8.29922 -6.36264 -0.47029 1.36306 1.40761 1.49221 1.92952 2.35080 2.44131 2.94078 3.03858 3.30404 3.66017 3.84915 3.91358 3.92377 4.07151 4.08711 4.15275 4.35602 4.39097 4.40719 4.42816 4.50907 4.59263 4.61577 4.67606 4.68524 4.73998 4.81276 4.85166 4.92963 4.93401 4.95129 5.00527 5.01612 5.06533 5.09278 5.12983 5.26471 5.29988 5.37319 5.41765 5.47910 5.50127 5.53357 5.82017 6.05255 6.10793 6.29578 6.66445 7.26823 8.87912 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.003253 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.617562 B = 8604.792339 C = 8881.768689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.993 5.993 4 C 0.238 3.762 5 C -0.544 4.544 6 H 0.024 0.976 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.225 1.225 13 S 2.784 3.216 14 O -1.008 7.008 15 O -1.008 7.008 16 N -1.003 6.003 17 C 0.087 3.913 18 C 0.121 3.879 19 C 0.036 3.964 20 N -0.528 5.528 21 C 0.036 3.964 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.110 4.110 25 C 0.048 3.952 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.268 0.732 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.013 0.987 41 H 0.018 0.982 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.156 -0.766 18.388 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 N -0.833 5.833 4 C 0.113 3.887 5 C -0.584 4.584 6 H 0.042 0.958 7 C -0.192 4.192 8 N -0.590 5.590 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.148 1.148 13 S 2.794 3.206 14 O -0.992 6.992 15 O -0.992 6.992 16 N -0.844 5.844 17 C -0.058 4.058 18 C -0.004 4.004 19 C -0.094 4.094 20 N -0.253 5.253 21 C -0.091 4.091 22 C -0.150 4.150 23 C -0.162 4.162 24 C -0.148 4.148 25 C -0.080 4.080 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.031 0.969 41 H 0.036 0.964 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -20.657 -0.514 18.620 27.815 hybrid contribution 1.477 -0.022 -0.819 1.689 sum -19.181 -0.536 17.801 26.173 Atomic orbital electron populations 1.22229 0.93451 1.03701 1.02749 1.21418 0.96069 0.81226 1.03243 1.57517 1.81642 1.22774 1.21393 1.19185 0.95695 0.91467 0.82351 1.21704 1.02565 1.27925 1.06167 0.95810 1.25982 0.97158 0.98226 0.97842 1.70083 1.23286 1.45917 1.19722 0.85773 0.80940 0.79084 0.77624 1.19226 1.20480 1.14785 1.01679 0.73785 0.72523 0.72633 1.93564 1.61782 1.59113 1.84723 1.93487 1.83947 1.58379 1.63345 1.57757 1.42335 1.23393 1.60955 1.21720 1.04358 0.79597 1.00120 1.21634 0.95001 0.96033 0.87700 1.22559 0.93621 1.00248 0.92992 1.62111 1.47645 1.13123 1.02471 1.22380 0.98133 0.87838 1.00787 1.21582 0.98463 1.00411 0.94532 1.21619 1.01459 0.96572 0.96554 1.21558 0.99162 0.95724 0.98360 1.22210 0.96588 1.01301 0.87877 0.91806 0.91955 0.89263 0.90975 0.90434 0.92516 0.94876 0.92335 0.91917 0.92347 0.87166 0.90272 0.86419 0.89016 0.96858 0.96413 0.89465 0.90573 0.90459 0.90351 0.93137 0.90637 0.90493 0.90183 0.96282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.11 3.52 6.40 86.38 0.55 4.07 16 3 N -0.99 -39.94 2.82 -519.83 -1.47 -41.41 16 4 C 0.24 10.91 4.17 85.64 0.36 11.26 16 5 C -0.54 -32.01 9.94 25.60 0.25 -31.75 16 6 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 7 C 0.01 0.32 5.47 84.65 0.46 0.79 16 8 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 9 Si 0.94 42.44 27.47 68.60 1.88 44.32 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.23 -8.65 6.54 99.48 0.65 -8.00 16 13 S 2.78 111.33 5.97 -56.49 -0.34 110.99 16 14 O -1.01 -49.63 16.18 -128.00 -2.07 -51.70 16 15 O -1.01 -42.52 15.66 -128.00 -2.00 -44.52 16 16 N -1.00 -27.71 3.24 -539.11 -1.75 -29.46 16 17 C 0.09 1.97 10.33 127.77 1.32 3.29 16 18 C 0.12 2.64 3.94 86.38 0.34 2.98 16 19 C 0.04 0.80 5.60 86.30 0.48 1.28 16 20 N -0.53 -10.29 4.81 -896.37 -4.31 -14.59 16 21 C 0.04 0.68 4.85 86.33 0.42 1.10 16 22 C -0.11 -1.58 6.09 30.65 0.19 -1.39 16 23 C -0.12 -1.66 6.00 30.68 0.18 -1.47 16 24 C -0.11 -1.49 6.09 30.65 0.19 -1.30 16 25 C 0.05 0.86 5.42 86.32 0.47 1.33 16 26 H 0.06 1.27 6.08 -2.38 -0.01 1.26 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 30 H 0.08 2.54 6.92 -2.38 -0.02 2.52 16 31 H 0.06 2.35 7.17 -2.38 -0.02 2.33 16 32 H 0.03 1.49 6.69 -2.38 -0.02 1.47 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.06 1.53 7.44 -2.39 -0.02 1.51 16 36 H 0.11 1.62 7.94 -2.39 -0.02 1.60 16 37 H 0.08 1.80 4.43 -2.38 -0.01 1.79 16 38 H 0.12 1.85 7.96 -2.39 -0.02 1.83 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 40 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 41 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.09 1.49 5.81 -2.38 -0.01 1.48 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.08 1.31 8.12 -2.38 -0.02 1.29 16 50 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -78.48 394.22 -2.97 -81.45 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.84 Total: 18.13 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.95 Total: -12.84 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -7.22 Total: -145.84 kcal Atomic # 8 Polarization: -92.15 SS G_CDS: -4.08 Total: -96.22 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Atomic # 16 Polarization: 111.33 SS G_CDS: -0.34 Total: 110.99 kcal Total: -78.48 -2.97 -81.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593665480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.998 kcal (2) G-P(sol) polarization free energy of solvation -78.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds