Wall clock time and date at job start Tue Mar 31 2020 18:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99679 * 2 1 4 4 H 1.48499 * 109.46821 * 239.99698 * 3 2 1 5 5 H 1.48496 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47085 * 120.00093 * 3 2 1 7 7 C 1.37878 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99746 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.34965 * 125.98029 * 124.99756 * 10 9 7 12 12 C 1.35246 * 107.86109 * 179.97438 * 11 10 9 13 13 C 1.40398 * 107.86537 * 0.02562 * 12 11 10 14 14 N 1.40202 * 125.96980 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99856 * 0.02562 * 14 13 12 16 16 O 1.21585 * 120.00178 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99698 * 180.02562 * 15 14 13 18 18 C 1.48116 * 127.84450 * 359.97020 * 17 15 14 19 19 C 1.54329 * 104.69467 * 140.29602 * 18 17 15 20 20 H 1.09002 * 111.85243 * 262.45000 * 19 18 17 21 21 C 1.54158 * 108.85813 * 138.37692 * 19 18 17 22 22 C 1.56443 * 103.56944 * 224.29683 * 21 19 18 23 23 C 1.54843 * 103.23352 * 37.28321 * 22 21 19 24 24 C 1.54162 * 104.33018 * 322.23168 * 23 22 21 25 25 C 1.52995 * 112.55290 * 260.80043 * 24 23 22 26 26 N 1.46906 * 109.46832 * 299.76421 * 25 24 23 27 27 C 1.48118 * 127.84182 * 180.02562 * 17 15 14 28 28 N 1.31208 * 108.05664 * 0.26073 * 13 12 11 29 29 H 0.96998 * 120.00213 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47340 * 59.99497 * 9 7 2 31 31 H 1.09002 * 109.46759 * 299.99130 * 9 7 2 32 32 H 1.07996 * 126.06829 * 359.97379 * 11 10 9 33 33 H 1.08000 * 126.06630 * 179.97438 * 12 11 10 34 34 H 0.96998 * 119.99774 * 179.97438 * 14 13 12 35 35 H 1.09000 * 110.39163 * 21.49245 * 18 17 15 36 36 H 1.09005 * 110.39405 * 259.10163 * 18 17 15 37 37 H 1.08999 * 110.46766 * 341.55793 * 21 19 18 38 38 H 1.09005 * 110.45825 * 104.13455 * 21 19 18 39 39 H 1.09000 * 110.16523 * 278.97872 * 22 21 19 40 40 H 1.08997 * 111.03702 * 156.00875 * 22 21 19 41 41 H 1.09004 * 110.46138 * 203.51709 * 23 22 21 42 42 H 1.09001 * 110.56754 * 81.00184 * 23 22 21 43 43 H 1.09008 * 109.47190 * 59.76049 * 25 24 23 44 44 H 1.08998 * 109.47296 * 179.76609 * 25 24 23 45 45 H 1.00907 * 110.99698 * 179.97438 * 26 25 24 46 46 H 1.00903 * 111.00054 * 303.95299 * 26 25 24 47 47 H 1.09007 * 110.39263 * 338.51096 * 27 17 15 48 48 H 1.08997 * 110.39324 * 100.89623 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2424 -4.6224 0.8952 12 6 3.2607 -5.4429 0.5503 13 6 3.8688 -4.9147 -0.5996 14 7 4.9650 -5.4655 -1.2783 15 6 5.5292 -6.6058 -0.8335 16 8 5.0879 -7.1566 0.1565 17 7 6.5834 -7.1349 -1.4857 18 6 7.2565 -6.6145 -2.6981 19 6 8.7599 -6.8539 -2.4445 20 1 9.2554 -5.9590 -2.0680 21 6 9.4096 -7.3643 -3.7459 22 6 10.3201 -8.5418 -3.2644 23 6 9.4822 -9.2014 -2.1416 24 6 8.8093 -8.0161 -1.4213 25 6 9.5412 -7.6171 -0.1384 26 7 9.5565 -8.7548 0.7908 27 6 7.3311 -8.3696 -1.1532 28 7 3.2358 -3.8123 -0.9246 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6243 -2.5567 0.8904 32 1 1.5784 -4.7521 1.7370 33 1 3.5545 -6.3439 1.0682 34 1 5.3169 -5.0262 -2.0683 35 1 7.0561 -5.5496 -2.8162 36 1 6.9279 -7.1639 -3.5804 37 1 8.6493 -7.7456 -4.4275 38 1 9.9850 -6.5699 -4.2215 39 1 11.2585 -8.1536 -2.8686 40 1 10.5064 -9.2483 -4.0732 41 1 10.1286 -9.7476 -1.4546 42 1 8.7299 -9.8665 -2.5657 43 1 10.5651 -7.3303 -0.3785 44 1 9.0276 -6.7754 0.3262 45 1 10.0352 -8.5164 1.6465 46 1 8.6202 -9.0809 0.9786 47 1 7.1869 -8.6302 -0.1046 48 1 7.0140 -9.1904 -1.7964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593758154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:49 Heat of formation + Delta-G solvation = 61.053225 kcal Electronic energy + Delta-G solvation = -28711.579146 eV Core-core repulsion = 24803.210203 eV Total energy + Delta-G solvation = -3908.368943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12948 -40.39089 -38.92750 -35.12342 -34.77366 -34.49266 -33.30460 -31.00931 -30.46231 -29.47362 -29.21398 -26.76596 -26.01188 -25.60353 -23.40686 -22.75604 -21.23666 -20.98336 -20.18137 -19.34719 -18.91054 -17.96590 -16.67353 -16.59138 -16.48963 -16.03733 -15.67080 -15.40457 -14.96038 -14.76428 -14.65838 -14.23613 -14.20371 -13.89597 -13.66319 -13.44390 -12.89886 -12.75373 -12.49517 -12.29529 -12.23392 -12.07965 -11.75888 -11.47238 -11.37077 -11.16287 -11.06874 -11.01338 -10.96376 -10.86620 -10.79129 -10.44201 -10.25137 -10.05280 -9.67236 -9.49729 -9.02138 -8.91901 -8.62402 -8.09307 -7.40400 -6.23758 -4.28850 2.26266 2.66026 3.09915 3.25280 3.28527 3.32581 3.44349 3.81470 3.86655 3.99118 4.15748 4.23000 4.34259 4.45951 4.72235 4.77924 4.84882 4.90126 4.94668 5.03177 5.11166 5.24399 5.28989 5.35503 5.38277 5.50395 5.51572 5.52414 5.64977 5.69598 5.71247 5.80199 5.82634 5.97546 6.00462 6.03904 6.31030 6.54521 6.68083 6.77326 6.83127 7.02036 7.08020 7.12664 7.50045 7.69871 7.81818 7.95798 8.07511 8.57890 8.66908 8.81114 9.36561 10.84887 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002349 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.382824 B =11916.373229 C =12514.328630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.642 5.642 15 C 0.736 3.264 16 O -0.566 6.566 17 N -0.641 5.641 18 C 0.102 3.898 19 C -0.098 4.098 20 H 0.089 0.911 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.106 4.106 24 C -0.070 4.070 25 C 0.082 3.918 26 N -0.849 5.849 27 C 0.135 3.865 28 N -0.307 5.307 29 H 0.268 0.732 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.405 0.595 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.342 0.658 46 H 0.342 0.658 47 H 0.080 0.920 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.032 -18.091 -5.207 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.142 3.858 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.022 3.978 14 N -0.292 5.292 15 C 0.438 3.562 16 O -0.442 6.442 17 N -0.379 5.379 18 C -0.021 4.021 19 C -0.118 4.118 20 H 0.107 0.893 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.144 4.144 24 C -0.071 4.071 25 C -0.049 4.049 26 N -0.380 5.380 27 C 0.012 3.988 28 N -0.139 5.139 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.099 0.901 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.665 -17.619 -5.792 27.031 hybrid contribution -0.030 1.333 0.737 1.523 sum 19.635 -16.286 -5.054 26.007 Atomic orbital electron populations 1.69908 1.06026 1.27717 1.49727 1.24945 0.94985 0.99519 0.94629 0.86387 0.79382 0.81824 0.78901 1.19958 1.21032 1.20060 1.21221 0.93946 0.89418 1.52102 0.91390 1.19730 0.85601 0.81277 0.99239 1.49059 1.23061 1.19777 1.18338 1.22550 1.00295 0.90294 0.96728 1.21498 1.02114 1.06452 1.01706 1.18782 0.90670 0.94014 0.94365 1.41376 1.31436 1.24928 1.31422 1.15024 0.78966 0.80009 0.82230 1.90863 1.64016 1.62648 1.26666 1.48011 1.32112 1.27739 1.30070 1.22628 0.91591 0.99882 0.88033 1.22740 0.95006 0.98439 0.95631 0.89306 1.22734 0.99106 0.97926 0.95823 1.22761 0.98325 0.96941 0.98024 1.22365 0.99180 0.96021 0.96810 1.22095 0.94416 0.95673 0.94928 1.21622 0.99852 0.91626 0.91809 1.58788 1.23839 1.36823 1.18531 1.22391 0.88595 0.85776 1.02022 1.77323 1.03782 1.16115 1.16639 0.92276 0.93757 0.92537 0.81509 0.82267 0.75959 0.90629 0.90543 0.91163 0.91082 0.91641 0.91522 0.89739 0.91472 0.90723 0.95155 0.84525 0.84466 0.90123 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.82 9.23 -34.44 -0.32 -15.13 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 10 N -0.32 -7.59 3.67 -62.56 -0.23 -7.82 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.29 -5.88 9.61 -39.83 -0.38 -6.27 16 13 C 0.28 5.74 8.11 -154.36 -1.25 4.48 16 14 N -0.64 -10.65 5.43 -15.51 -0.08 -10.74 16 15 C 0.74 11.65 8.54 -86.92 -0.74 10.90 16 16 O -0.57 -10.68 13.73 5.29 0.07 -10.61 16 17 N -0.64 -7.30 3.31 -175.13 -0.58 -7.88 16 18 C 0.10 0.83 6.44 -2.46 -0.02 0.82 16 19 C -0.10 -0.67 3.51 -88.30 -0.31 -0.98 16 20 H 0.09 0.62 7.88 -51.93 -0.41 0.22 16 21 C -0.12 -0.63 6.50 -24.27 -0.16 -0.79 16 22 C -0.12 -0.66 6.93 -23.91 -0.17 -0.82 16 23 C -0.11 -0.66 5.92 -25.15 -0.15 -0.80 16 24 C -0.07 -0.50 0.73 -152.19 -0.11 -0.61 16 25 C 0.08 0.62 5.83 -3.82 -0.02 0.60 16 26 N -0.85 -5.98 8.94 -10.37 -0.09 -6.07 16 27 C 0.14 1.26 6.04 -2.45 -0.01 1.25 16 28 N -0.31 -7.23 12.42 31.44 0.39 -6.84 16 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.79 8.06 -52.49 -0.42 2.36 16 33 H 0.16 3.22 5.91 -52.49 -0.31 2.91 16 34 H 0.41 5.67 7.22 -40.82 -0.29 5.37 16 35 H 0.08 0.59 6.86 -51.93 -0.36 0.24 16 36 H 0.08 0.54 7.20 -51.93 -0.37 0.17 16 37 H 0.07 0.36 7.19 -51.93 -0.37 -0.01 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.58 7.41 -51.93 -0.38 0.20 16 42 H 0.07 0.41 7.17 -51.93 -0.37 0.04 16 43 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.34 2.05 9.08 -39.29 -0.36 1.69 16 46 H 0.34 2.53 7.16 -39.29 -0.28 2.24 16 47 H 0.08 0.84 6.01 -51.93 -0.31 0.53 16 48 H 0.07 0.63 7.18 -51.93 -0.37 0.25 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -32.71 379.55 -10.18 -42.89 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.12 Total: 7.88 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.97 Total: 1.75 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.14 Total: -64.06 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.71 -10.18 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593758154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.944 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds