Wall clock time and date at job start Tue Mar 31 2020 18:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99679 * 2 1 4 4 H 1.48499 * 109.46821 * 239.99698 * 3 2 1 5 5 H 1.48496 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47085 * 120.00093 * 3 2 1 7 7 C 1.37878 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99746 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.34965 * 125.98029 * 124.99756 * 10 9 7 12 12 C 1.35246 * 107.86109 * 179.97438 * 11 10 9 13 13 C 1.40398 * 107.86537 * 0.02562 * 12 11 10 14 14 N 1.40202 * 125.96980 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99856 * 0.02562 * 14 13 12 16 16 O 1.21585 * 120.00178 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99698 * 180.02562 * 15 14 13 18 18 C 1.48116 * 127.84450 * 359.97020 * 17 15 14 19 19 C 1.54329 * 104.69467 * 140.29602 * 18 17 15 20 20 H 1.09002 * 111.85243 * 262.45000 * 19 18 17 21 21 C 1.54158 * 108.85813 * 138.37692 * 19 18 17 22 22 C 1.56443 * 103.56944 * 224.29683 * 21 19 18 23 23 C 1.54843 * 103.23352 * 37.28321 * 22 21 19 24 24 C 1.54162 * 104.33018 * 322.23168 * 23 22 21 25 25 C 1.52995 * 112.55290 * 260.80043 * 24 23 22 26 26 N 1.46906 * 109.46832 * 299.76421 * 25 24 23 27 27 C 1.48118 * 127.84182 * 180.02562 * 17 15 14 28 28 N 1.31208 * 108.05664 * 0.26073 * 13 12 11 29 29 H 0.96998 * 120.00213 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47340 * 59.99497 * 9 7 2 31 31 H 1.09002 * 109.46759 * 299.99130 * 9 7 2 32 32 H 1.07996 * 126.06829 * 359.97379 * 11 10 9 33 33 H 1.08000 * 126.06630 * 179.97438 * 12 11 10 34 34 H 0.96998 * 119.99774 * 179.97438 * 14 13 12 35 35 H 1.09000 * 110.39163 * 21.49245 * 18 17 15 36 36 H 1.09005 * 110.39405 * 259.10163 * 18 17 15 37 37 H 1.08999 * 110.46766 * 341.55793 * 21 19 18 38 38 H 1.09005 * 110.45825 * 104.13455 * 21 19 18 39 39 H 1.09000 * 110.16523 * 278.97872 * 22 21 19 40 40 H 1.08997 * 111.03702 * 156.00875 * 22 21 19 41 41 H 1.09004 * 110.46138 * 203.51709 * 23 22 21 42 42 H 1.09001 * 110.56754 * 81.00184 * 23 22 21 43 43 H 1.09008 * 109.47190 * 59.76049 * 25 24 23 44 44 H 1.08998 * 109.47296 * 179.76609 * 25 24 23 45 45 H 1.00907 * 110.99698 * 179.97438 * 26 25 24 46 46 H 1.00903 * 111.00054 * 303.95299 * 26 25 24 47 47 H 1.09007 * 110.39263 * 338.51096 * 27 17 15 48 48 H 1.08997 * 110.39324 * 100.89623 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2424 -4.6224 0.8952 12 6 3.2607 -5.4429 0.5503 13 6 3.8688 -4.9147 -0.5996 14 7 4.9650 -5.4655 -1.2783 15 6 5.5292 -6.6058 -0.8335 16 8 5.0879 -7.1566 0.1565 17 7 6.5834 -7.1349 -1.4857 18 6 7.2565 -6.6145 -2.6981 19 6 8.7599 -6.8539 -2.4445 20 1 9.2554 -5.9590 -2.0680 21 6 9.4096 -7.3643 -3.7459 22 6 10.3201 -8.5418 -3.2644 23 6 9.4822 -9.2014 -2.1416 24 6 8.8093 -8.0161 -1.4213 25 6 9.5412 -7.6171 -0.1384 26 7 9.5565 -8.7548 0.7908 27 6 7.3311 -8.3696 -1.1532 28 7 3.2358 -3.8123 -0.9246 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6243 -2.5567 0.8904 32 1 1.5784 -4.7521 1.7370 33 1 3.5545 -6.3439 1.0682 34 1 5.3169 -5.0262 -2.0683 35 1 7.0561 -5.5496 -2.8162 36 1 6.9279 -7.1639 -3.5804 37 1 8.6493 -7.7456 -4.4275 38 1 9.9850 -6.5699 -4.2215 39 1 11.2585 -8.1536 -2.8686 40 1 10.5064 -9.2483 -4.0732 41 1 10.1286 -9.7476 -1.4546 42 1 8.7299 -9.8665 -2.5657 43 1 10.5651 -7.3303 -0.3785 44 1 9.0276 -6.7754 0.3262 45 1 10.0352 -8.5164 1.6465 46 1 8.6202 -9.0809 0.9786 47 1 7.1869 -8.6302 -0.1046 48 1 7.0140 -9.1904 -1.7964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593758154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:48 Heat of formation + Delta-G solvation = 39.616795 kcal Electronic energy + Delta-G solvation = -28712.508700 eV Core-core repulsion = 24803.210203 eV Total energy + Delta-G solvation = -3909.298497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32959 -41.62726 -40.08803 -36.26318 -36.01029 -35.22207 -35.11815 -32.78502 -31.09966 -30.96097 -30.20847 -28.54049 -26.78152 -26.40224 -24.96768 -23.86605 -22.56738 -21.88135 -21.41033 -20.61268 -19.65561 -19.04111 -18.68321 -18.07710 -17.40871 -17.13325 -16.86952 -16.43279 -16.17230 -15.96720 -15.68028 -15.51526 -15.26982 -14.99696 -14.55216 -14.35471 -14.23126 -14.14198 -13.86153 -13.69705 -13.46619 -13.15507 -12.95901 -12.75078 -12.69979 -12.29444 -12.13948 -12.04460 -11.83380 -11.76376 -11.64916 -11.56053 -11.49108 -11.42862 -11.35436 -11.04126 -10.72794 -9.96572 -9.72778 -9.61937 -9.07085 -8.33432 -6.47748 0.99353 1.06188 1.37417 1.39459 1.48256 1.64789 1.99158 2.34036 2.34725 2.83453 2.98107 3.28616 3.41978 3.57695 3.88212 3.93998 4.11565 4.16895 4.24066 4.25814 4.32769 4.39146 4.51108 4.58218 4.66840 4.71766 4.78233 4.79287 4.85744 4.91627 4.91855 4.97443 4.99397 5.02508 5.10792 5.22360 5.26642 5.31560 5.43275 5.50334 5.55171 5.57007 5.74674 5.86097 5.93582 6.17148 6.27093 6.51153 6.58839 6.66399 7.06915 7.22026 7.33199 8.73944 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002349 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.382824 B =11916.373229 C =12514.328630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.344 5.344 11 C 0.058 3.942 12 C -0.293 4.293 13 C 0.284 3.716 14 N -0.636 5.636 15 C 0.731 3.269 16 O -0.601 6.601 17 N -0.634 5.634 18 C 0.095 3.905 19 C -0.094 4.094 20 H 0.088 0.912 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.100 4.100 24 C -0.063 4.063 25 C 0.085 3.915 26 N -0.847 5.847 27 C 0.131 3.869 28 N -0.346 5.346 29 H 0.273 0.727 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.165 0.835 34 H 0.416 0.584 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.007 0.993 45 H 0.348 0.652 46 H 0.339 0.661 47 H 0.066 0.934 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.892 -18.502 -6.034 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.324 4.324 13 C 0.028 3.972 14 N -0.287 5.287 15 C 0.433 3.567 16 O -0.480 6.480 17 N -0.371 5.371 18 C -0.027 4.027 19 C -0.114 4.114 20 H 0.106 0.894 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.138 4.138 24 C -0.064 4.064 25 C -0.046 4.046 26 N -0.378 5.378 27 C 0.008 3.992 28 N -0.178 5.178 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.182 0.818 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.026 0.974 45 H 0.161 0.839 46 H 0.153 0.847 47 H 0.085 0.915 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.584 -18.063 -6.653 28.921 hybrid contribution -0.526 1.316 0.988 1.728 sum 21.057 -16.747 -5.665 27.495 Atomic orbital electron populations 1.69986 1.07199 1.28853 1.49840 1.25742 0.95858 1.02713 0.93875 0.85407 0.78302 0.77860 0.78907 1.19802 1.19723 1.19523 1.21366 0.93349 0.90983 1.52962 0.93004 1.19345 0.85637 0.81451 0.98140 1.48839 1.23655 1.20374 1.19739 1.23152 1.00363 0.88848 0.96672 1.21657 1.02272 1.06651 1.01853 1.19073 0.90836 0.93033 0.94219 1.41375 1.30502 1.25264 1.31601 1.15183 0.79723 0.79604 0.82194 1.90823 1.65392 1.63444 1.28300 1.48057 1.30598 1.28035 1.30404 1.22944 0.92214 1.00384 0.87113 1.22743 0.93994 0.98253 0.96421 0.89412 1.22722 0.99234 0.98147 0.94904 1.22744 0.98068 0.96987 0.97873 1.22316 0.99183 0.95432 0.96882 1.22062 0.92851 0.96506 0.94997 1.21590 1.00010 0.91013 0.91986 1.58815 1.23679 1.36410 1.18899 1.22628 0.89688 0.85250 1.01595 1.77244 1.04876 1.17807 1.17830 0.91806 0.96030 0.92294 0.78090 0.81783 0.74603 0.90307 0.88705 0.90474 0.90163 0.91587 0.90501 0.90317 0.91028 0.89889 0.97435 0.83889 0.84743 0.91508 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.42 13.29 21.45 0.28 -52.13 16 2 C 0.02 1.03 5.46 84.65 0.46 1.49 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.25 9.23 25.60 0.24 -31.02 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 14.36 6.26 85.64 0.54 14.89 16 10 N -0.34 -16.55 3.67 -351.84 -1.29 -17.84 16 11 C 0.06 2.37 11.44 83.52 0.96 3.33 16 12 C -0.29 -12.04 9.61 22.11 0.21 -11.83 16 13 C 0.28 11.90 8.11 133.31 1.08 12.98 16 14 N -0.64 -21.01 5.43 -321.24 -1.74 -22.75 16 15 C 0.73 22.95 8.54 179.06 1.53 24.48 16 16 O -0.60 -22.79 13.73 -3.99 -0.05 -22.85 16 17 N -0.63 -13.85 3.31 -826.26 -2.74 -16.59 16 18 C 0.10 1.38 6.44 86.52 0.56 1.94 16 19 C -0.09 -1.09 3.51 -9.29 -0.03 -1.12 16 20 H 0.09 1.07 7.88 -2.39 -0.02 1.05 16 21 C -0.11 -0.87 6.50 32.19 0.21 -0.66 16 22 C -0.12 -0.93 6.93 32.42 0.22 -0.71 16 23 C -0.10 -1.02 5.92 31.62 0.19 -0.83 16 24 C -0.06 -0.81 0.73 -50.68 -0.04 -0.84 16 25 C 0.09 1.22 5.83 86.30 0.50 1.73 16 26 N -0.85 -11.33 8.94 -186.71 -1.67 -13.00 16 27 C 0.13 2.30 6.04 86.52 0.52 2.82 16 28 N -0.35 -16.58 12.42 -54.43 -0.68 -17.26 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 32 H 0.20 6.47 8.06 -2.91 -0.02 6.45 16 33 H 0.16 6.63 5.91 -2.91 -0.02 6.62 16 34 H 0.42 11.47 7.22 -92.71 -0.67 10.80 16 35 H 0.08 1.11 6.86 -2.39 -0.02 1.09 16 36 H 0.09 1.08 7.20 -2.38 -0.02 1.07 16 37 H 0.08 0.53 7.19 -2.39 -0.02 0.51 16 38 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 0.93 7.41 -2.38 -0.02 0.91 16 42 H 0.07 0.69 7.17 -2.39 -0.02 0.67 16 43 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.01 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.35 3.95 9.08 -89.69 -0.81 3.14 16 46 H 0.34 4.92 7.16 -89.69 -0.64 4.28 16 47 H 0.07 1.38 6.01 -2.38 -0.01 1.37 16 48 H 0.09 1.32 7.18 -2.39 -0.02 1.30 16 Total: -1.00 -70.79 379.55 0.18 -70.61 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -1.11 Total: 29.36 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 7.15 Total: 16.66 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -7.83 Total: -139.57 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.79 0.18 -70.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593758154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.226 kcal (2) G-P(sol) polarization free energy of solvation -70.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds