Wall clock time and date at job start Tue Mar 31 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47000 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46741 * 54.99859 * 12 11 10 14 14 N 1.46901 * 109.47133 * 295.00480 * 12 11 10 15 15 C 1.50693 * 109.47471 * 175.00126 * 12 11 10 16 16 O 1.21286 * 119.99944 * 99.99900 * 15 12 11 17 17 N 1.34773 * 120.00443 * 280.00513 * 15 12 11 18 18 C 1.47088 * 120.87678 * 359.71726 * 17 15 12 19 19 C 1.53692 * 108.27509 * 128.75646 * 18 17 15 20 20 N 1.46905 * 109.25585 * 54.08414 * 19 18 17 21 21 C 1.39043 * 110.99836 * 172.60457 * 20 19 18 22 22 C 1.39480 * 120.16130 * 304.30092 * 21 20 19 23 23 C 1.38563 * 117.90915 * 180.02562 * 22 21 20 24 24 C 1.38820 * 118.03672 * 359.97438 * 23 22 21 25 25 N 1.31792 * 120.01459 * 359.97438 * 24 23 22 26 26 N 1.28351 * 122.28360 * 359.74625 * 25 24 23 27 27 C 1.46899 * 111.26974 * 296.75193 * 20 19 18 28 28 C 1.47083 * 120.88716 * 179.97438 * 17 15 12 29 29 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 31 31 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 34 34 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 35 35 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 36 36 H 1.00896 * 111.00006 * 176.04213 * 14 12 11 37 37 H 1.00900 * 111.00145 * 299.99801 * 14 12 11 38 38 H 1.09003 * 109.62471 * 248.52812 * 18 17 15 39 39 H 1.08999 * 109.62622 * 9.10734 * 18 17 15 40 40 H 1.08995 * 109.65234 * 294.08256 * 19 18 17 41 41 H 1.09003 * 109.44539 * 173.95784 * 19 18 17 42 42 H 1.08005 * 121.04653 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.98268 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.99389 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.49249 * 303.15231 * 27 20 19 46 46 H 1.08996 * 109.51412 * 183.08039 * 27 20 19 47 47 H 1.08995 * 109.62217 * 350.89217 * 28 17 15 48 48 H 1.09002 * 109.62610 * 111.47359 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1588 -6.0426 0.8436 14 7 3.2379 -6.1424 -1.2533 15 6 1.7254 -7.4515 0.1263 16 8 1.5132 -8.1257 -0.8594 17 7 1.2910 -7.8664 1.3327 18 6 1.5428 -7.0671 2.5415 19 6 0.2082 -6.8752 3.2791 20 7 -0.4054 -8.1881 3.5199 21 6 -1.5302 -8.0715 4.3289 22 6 -1.4346 -7.4581 5.5780 23 6 -2.5845 -7.3675 6.3458 24 6 -3.7597 -7.8917 5.8251 25 7 -3.7595 -8.4542 4.6332 26 7 -2.6994 -8.5368 3.9144 27 6 -0.7330 -8.8629 2.2569 28 6 0.5573 -9.1331 1.4764 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8903 32 1 2.8721 -3.6042 -0.8894 33 1 2.8721 -3.6043 0.8905 34 1 0.8541 -5.0446 0.8913 35 1 0.8535 -5.0451 -0.8886 36 1 3.9456 -6.8615 -1.2505 37 1 2.6258 -6.2406 -2.0494 38 1 2.2490 -7.5907 3.1860 39 1 1.9501 -6.0960 2.2600 40 1 -0.4618 -6.2664 2.6722 41 1 0.3886 -6.3778 4.2321 42 1 -0.4937 -7.0668 5.9358 43 1 -2.5671 -6.9021 7.3202 44 1 -4.6746 -7.8378 6.3964 45 1 -1.3898 -8.2263 1.6641 46 1 -1.2349 -9.8071 2.4681 47 1 0.3127 -9.5283 0.4905 48 1 1.1704 -9.8516 2.0204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594435961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:03 Heat of formation + Delta-G solvation = 33.173257 kcal Electronic energy + Delta-G solvation = -28801.631963 eV Core-core repulsion = 24892.054053 eV Total energy + Delta-G solvation = -3909.577910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61007 -40.47408 -38.54278 -35.86423 -35.33260 -33.57841 -33.38555 -31.67077 -31.48689 -31.38999 -28.28666 -27.50788 -25.68407 -24.95338 -23.83072 -23.44615 -22.45538 -21.23178 -20.07533 -19.22204 -18.15976 -17.66319 -17.24056 -16.64615 -16.39763 -16.22901 -15.80129 -15.69288 -15.50281 -15.02683 -14.52452 -14.46877 -14.39334 -14.28549 -13.89195 -13.57191 -13.27511 -13.00031 -12.72988 -12.38718 -12.00743 -11.92904 -11.80099 -11.63842 -11.46810 -11.37604 -11.18792 -10.98447 -10.76020 -10.67131 -10.58794 -10.45863 -10.21476 -9.95049 -9.65421 -9.26838 -9.09579 -9.04281 -8.74091 -8.59744 -8.32407 -5.98125 -4.00122 0.47599 0.60204 2.46289 2.63965 2.97077 3.29781 3.34024 3.38545 3.41172 3.87444 4.15968 4.25905 4.34218 4.38005 4.46556 4.47868 4.57312 4.67691 4.73867 4.80011 4.83672 4.98209 5.10661 5.14524 5.26407 5.31759 5.34174 5.37633 5.42742 5.45603 5.54033 5.68331 5.72671 5.85166 6.04198 6.17053 6.30192 6.37133 6.47889 6.76182 6.95868 7.02166 7.18682 7.22632 7.47823 7.70760 7.85754 7.99253 8.02851 8.42847 8.45952 9.07335 9.63846 11.13183 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.003014 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.922169 B = 9288.979754 C =11609.554058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.105 4.105 12 C 0.077 3.923 13 H 0.101 0.899 14 N -0.811 5.811 15 C 0.486 3.514 16 O -0.547 6.547 17 N -0.616 5.616 18 C 0.109 3.891 19 C 0.040 3.960 20 N -0.469 5.469 21 C 0.256 3.744 22 C -0.132 4.132 23 C -0.096 4.096 24 C 0.013 3.987 25 N -0.221 5.221 26 N -0.283 5.283 27 C 0.049 3.951 28 C 0.112 3.888 29 H 0.260 0.740 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.338 0.662 37 H 0.350 0.650 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.172 0.828 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -19.166 13.839 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.039 4.039 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.274 3.726 16 O -0.424 6.424 17 N -0.351 5.351 18 C -0.015 4.015 19 C -0.086 4.086 20 N -0.187 5.187 21 C 0.018 3.982 22 C -0.163 4.163 23 C -0.125 4.125 24 C -0.154 4.154 25 N -0.062 5.062 26 N -0.130 5.130 27 C -0.078 4.078 28 C -0.011 4.011 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.189 0.811 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.148 -19.703 12.467 23.344 hybrid contribution 0.239 1.056 0.971 1.454 sum -0.909 -18.647 13.437 23.002 Atomic orbital electron populations 1.69958 1.06057 1.26611 1.51069 1.25029 0.94824 0.99220 0.95447 0.86677 0.79581 0.83222 0.78628 1.20223 1.21381 1.20281 1.21235 0.93039 0.91078 1.50259 0.92685 1.19106 0.94051 0.91626 0.96865 1.21544 0.98754 0.92178 1.01238 1.21694 0.96566 0.94095 1.01942 1.21801 0.95866 0.90862 0.95367 0.88122 1.59051 1.17339 1.54263 1.03260 1.22596 0.79058 0.88870 0.82107 1.90668 1.57676 1.57470 1.36577 1.48329 1.56653 1.22548 1.07522 1.22064 0.95905 0.97561 0.85955 1.22849 0.96434 0.87337 1.02011 1.59035 1.21859 1.20802 1.17040 1.21496 0.90248 0.93429 0.93021 1.22002 1.00770 0.99937 0.93610 1.22359 0.92585 0.96585 1.00971 1.24225 0.99555 0.96647 0.94968 1.72822 1.18868 1.10330 1.04177 1.73222 0.94752 1.18621 1.26417 1.22482 0.96984 1.00737 0.87609 1.21744 0.91819 0.86076 1.01461 0.93042 0.96820 0.97090 0.91710 0.93673 0.92130 0.91834 0.84961 0.83522 0.89946 0.87423 0.91931 0.88210 0.82968 0.82954 0.81085 0.92171 0.88119 0.88115 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -1.95 5.04 -26.73 -0.13 -2.08 16 11 C -0.10 -1.67 4.51 -26.73 -0.12 -1.79 16 12 C 0.08 1.01 2.29 -68.86 -0.16 0.85 16 13 H 0.10 1.15 6.85 -51.93 -0.36 0.80 16 14 N -0.81 -10.81 8.44 -5.65 -0.05 -10.86 16 15 C 0.49 6.53 6.95 -10.99 -0.08 6.45 16 16 O -0.55 -8.97 15.70 5.55 0.09 -8.88 16 17 N -0.62 -6.73 3.00 -172.20 -0.52 -7.25 16 18 C 0.11 0.93 6.00 -3.36 -0.02 0.91 16 19 C 0.04 0.35 5.44 -3.46 -0.02 0.33 16 20 N -0.47 -4.49 4.66 -172.49 -0.80 -5.29 16 21 C 0.26 2.66 6.47 -154.77 -1.00 1.66 16 22 C -0.13 -1.01 9.27 -39.00 -0.36 -1.37 16 23 C -0.10 -0.62 10.20 -39.25 -0.40 -1.02 16 24 C 0.01 0.11 11.31 -17.35 -0.20 -0.09 16 25 N -0.22 -2.64 11.49 30.57 0.35 -2.29 16 26 N -0.28 -3.55 9.87 31.23 0.31 -3.24 16 27 C 0.05 0.51 4.83 -3.72 -0.02 0.49 16 28 C 0.11 1.14 6.59 -3.62 -0.02 1.12 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 1.33 7.75 -51.93 -0.40 0.92 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.91 6.95 -51.93 -0.36 0.54 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.34 3.90 9.06 -39.29 -0.36 3.55 16 37 H 0.35 4.92 8.58 -39.29 -0.34 4.58 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.93 4.86 -51.93 -0.25 0.68 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.65 6.68 -51.93 -0.35 0.31 16 42 H 0.15 0.79 7.21 -52.48 -0.38 0.41 16 43 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 44 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.03 7.67 -51.93 -0.40 0.63 16 47 H 0.10 1.15 7.06 -51.93 -0.37 0.78 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -34.86 385.74 -9.50 -44.36 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.32 Total: 4.78 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.08 Total: -7.50 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.03 Total: -55.12 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.86 -9.50 -44.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594435961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.533 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds