Wall clock time and date at job start Tue Mar 31 2020 18:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47000 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46741 * 54.99859 * 12 11 10 14 14 N 1.46901 * 109.47133 * 295.00480 * 12 11 10 15 15 C 1.50693 * 109.47471 * 175.00126 * 12 11 10 16 16 O 1.21286 * 119.99944 * 99.99900 * 15 12 11 17 17 N 1.34773 * 120.00443 * 280.00513 * 15 12 11 18 18 C 1.47088 * 120.87678 * 359.71726 * 17 15 12 19 19 C 1.53692 * 108.27509 * 128.75646 * 18 17 15 20 20 N 1.46905 * 109.25585 * 54.08414 * 19 18 17 21 21 C 1.39043 * 110.99836 * 172.60457 * 20 19 18 22 22 C 1.39480 * 120.16130 * 304.30092 * 21 20 19 23 23 C 1.38563 * 117.90915 * 180.02562 * 22 21 20 24 24 C 1.38820 * 118.03672 * 359.97438 * 23 22 21 25 25 N 1.31792 * 120.01459 * 359.97438 * 24 23 22 26 26 N 1.28351 * 122.28360 * 359.74625 * 25 24 23 27 27 C 1.46899 * 111.26974 * 296.75193 * 20 19 18 28 28 C 1.47083 * 120.88716 * 179.97438 * 17 15 12 29 29 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 31 31 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 34 34 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 35 35 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 36 36 H 1.00896 * 111.00006 * 176.04213 * 14 12 11 37 37 H 1.00900 * 111.00145 * 299.99801 * 14 12 11 38 38 H 1.09003 * 109.62471 * 248.52812 * 18 17 15 39 39 H 1.08999 * 109.62622 * 9.10734 * 18 17 15 40 40 H 1.08995 * 109.65234 * 294.08256 * 19 18 17 41 41 H 1.09003 * 109.44539 * 173.95784 * 19 18 17 42 42 H 1.08005 * 121.04653 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.98268 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.99389 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.49249 * 303.15231 * 27 20 19 46 46 H 1.08996 * 109.51412 * 183.08039 * 27 20 19 47 47 H 1.08995 * 109.62217 * 350.89217 * 28 17 15 48 48 H 1.09002 * 109.62610 * 111.47359 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1588 -6.0426 0.8436 14 7 3.2379 -6.1424 -1.2533 15 6 1.7254 -7.4515 0.1263 16 8 1.5132 -8.1257 -0.8594 17 7 1.2910 -7.8664 1.3327 18 6 1.5428 -7.0671 2.5415 19 6 0.2082 -6.8752 3.2791 20 7 -0.4054 -8.1881 3.5199 21 6 -1.5302 -8.0715 4.3289 22 6 -1.4346 -7.4581 5.5780 23 6 -2.5845 -7.3675 6.3458 24 6 -3.7597 -7.8917 5.8251 25 7 -3.7595 -8.4542 4.6332 26 7 -2.6994 -8.5368 3.9144 27 6 -0.7330 -8.8629 2.2569 28 6 0.5573 -9.1331 1.4764 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8903 32 1 2.8721 -3.6042 -0.8894 33 1 2.8721 -3.6043 0.8905 34 1 0.8541 -5.0446 0.8913 35 1 0.8535 -5.0451 -0.8886 36 1 3.9456 -6.8615 -1.2505 37 1 2.6258 -6.2406 -2.0494 38 1 2.2490 -7.5907 3.1860 39 1 1.9501 -6.0960 2.2600 40 1 -0.4618 -6.2664 2.6722 41 1 0.3886 -6.3778 4.2321 42 1 -0.4937 -7.0668 5.9358 43 1 -2.5671 -6.9021 7.3202 44 1 -4.6746 -7.8378 6.3964 45 1 -1.3898 -8.2263 1.6641 46 1 -1.2349 -9.8071 2.4681 47 1 0.3127 -9.5283 0.4905 48 1 1.1704 -9.8516 2.0204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594435961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:02 Heat of formation + Delta-G solvation = 7.466228 kcal Electronic energy + Delta-G solvation = -28802.746703 eV Core-core repulsion = 24892.054053 eV Total energy + Delta-G solvation = -3910.692650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32523 -41.42365 -39.40477 -37.23026 -36.20109 -35.26531 -34.18939 -33.13818 -32.46432 -32.22881 -29.66425 -28.58820 -26.80736 -26.04148 -24.69739 -24.36188 -23.71410 -22.21309 -21.71400 -20.11903 -19.03547 -18.42845 -18.38469 -17.99889 -17.35485 -17.32269 -16.85084 -16.53765 -16.48220 -16.42905 -15.79068 -15.57951 -15.21089 -15.15005 -14.92367 -14.57951 -14.29633 -14.15223 -14.07362 -13.64652 -13.46453 -13.10111 -12.83115 -12.75905 -12.64768 -12.48558 -12.45778 -12.38608 -12.16370 -12.10185 -11.74110 -11.46436 -11.38418 -11.23554 -11.18240 -10.96023 -10.62131 -10.50748 -9.91794 -9.71053 -9.53900 -8.16188 -6.26748 -0.12197 -0.03307 1.39729 1.42580 1.45529 1.53196 1.78901 2.22459 2.44235 2.62327 3.17118 3.19876 3.31794 3.52915 3.60852 3.69801 3.78926 3.82673 3.88659 3.96186 4.04618 4.09003 4.16581 4.19354 4.22637 4.37768 4.47996 4.57237 4.64004 4.64804 4.71738 4.78351 4.84600 4.92543 4.94315 5.11983 5.15707 5.26134 5.32404 5.34450 5.56139 5.61599 5.74456 5.84446 5.94237 6.00352 6.24012 6.30820 6.45861 6.91248 6.97051 7.42596 7.73917 8.95292 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.003014 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.922169 B = 9288.979754 C =11609.554058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.082 4.082 11 C -0.094 4.094 12 C 0.088 3.912 13 H 0.129 0.871 14 N -0.817 5.817 15 C 0.485 3.515 16 O -0.582 6.582 17 N -0.611 5.611 18 C 0.106 3.894 19 C 0.040 3.960 20 N -0.460 5.460 21 C 0.237 3.763 22 C -0.133 4.133 23 C -0.085 4.085 24 C 0.013 3.987 25 N -0.269 5.269 26 N -0.325 5.325 27 C 0.060 3.940 28 C 0.117 3.883 29 H 0.262 0.738 30 H -0.021 1.021 31 H -0.007 1.007 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.350 0.650 37 H 0.345 0.655 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.034 0.966 41 H 0.130 0.870 42 H 0.183 0.817 43 H 0.196 0.804 44 H 0.202 0.798 45 H 0.030 0.970 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -18.640 16.769 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.120 4.120 11 C -0.132 4.132 12 C -0.028 4.028 13 H 0.146 0.854 14 N -0.346 5.346 15 C 0.273 3.727 16 O -0.462 6.462 17 N -0.344 5.344 18 C -0.016 4.016 19 C -0.086 4.086 20 N -0.179 5.179 21 C -0.003 4.003 22 C -0.163 4.163 23 C -0.113 4.113 24 C -0.155 4.155 25 N -0.108 5.108 26 N -0.171 5.171 27 C -0.068 4.068 28 C -0.006 4.006 29 H 0.070 0.930 30 H -0.003 1.003 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.052 0.948 41 H 0.148 0.852 42 H 0.200 0.800 43 H 0.213 0.787 44 H 0.219 0.781 45 H 0.049 0.951 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.951 -19.199 15.427 24.648 hybrid contribution -0.514 0.904 0.158 1.052 sum 0.437 -18.295 15.585 24.037 Atomic orbital electron populations 1.70103 1.07857 1.27643 1.52092 1.25982 0.95700 1.03353 0.94925 0.85540 0.78271 0.78204 0.79282 1.19498 1.21173 1.18668 1.21708 0.93640 0.92345 1.49932 0.91968 1.19036 0.94523 0.93558 0.94269 1.21278 0.97457 0.91618 1.01600 1.21485 0.96712 0.93661 1.01379 1.21667 0.95458 0.89351 0.96322 0.85369 1.59064 1.17521 1.54871 1.03106 1.22570 0.79026 0.88753 0.82355 1.90655 1.59139 1.58502 1.37928 1.48401 1.55522 1.22813 1.07688 1.22306 0.96345 0.97776 0.85164 1.22924 0.95770 0.86862 1.03067 1.59145 1.21727 1.20965 1.16056 1.21786 0.89901 0.94274 0.94300 1.22410 1.02575 0.98918 0.92418 1.22859 0.91224 0.95079 1.02182 1.24832 1.01653 0.95150 0.93896 1.72717 1.19228 1.12688 1.06155 1.73091 0.95756 1.20392 1.27863 1.22274 0.96442 1.00157 0.87953 1.21729 0.91917 0.86121 1.00810 0.92977 1.00284 0.98898 0.92530 0.91877 0.91207 0.94131 0.83634 0.84211 0.86960 0.87111 0.94760 0.85226 0.79993 0.78682 0.78137 0.95147 0.88411 0.89785 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.08 -3.17 5.04 30.60 0.15 -3.01 16 11 C -0.09 -2.99 4.51 30.60 0.14 -2.85 16 12 C 0.09 2.19 2.29 44.17 0.10 2.29 16 13 H 0.13 2.53 6.85 -2.39 -0.02 2.51 16 14 N -0.82 -21.11 8.44 -171.80 -1.45 -22.56 16 15 C 0.49 12.80 6.95 87.66 0.61 13.41 16 16 O -0.58 -19.39 15.70 -3.05 -0.05 -19.44 16 17 N -0.61 -12.76 3.00 -817.11 -2.45 -15.22 16 18 C 0.11 1.56 6.00 86.50 0.52 2.08 16 19 C 0.04 0.64 5.44 86.54 0.47 1.11 16 20 N -0.46 -8.42 4.66 -699.65 -3.26 -11.68 16 21 C 0.24 4.77 6.47 133.11 0.86 5.64 16 22 C -0.13 -1.68 9.27 22.65 0.21 -1.47 16 23 C -0.08 -0.82 10.20 22.49 0.23 -0.59 16 24 C 0.01 0.19 11.31 84.84 0.96 1.15 16 25 N -0.27 -6.52 11.49 -57.20 -0.66 -7.18 16 26 N -0.32 -8.45 9.87 -55.10 -0.54 -9.00 16 27 C 0.06 1.29 4.83 86.37 0.42 1.70 16 28 C 0.12 2.37 6.59 86.34 0.57 2.93 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.06 2.29 7.75 -2.39 -0.02 2.27 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.08 6.95 -2.39 -0.02 2.06 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.35 7.62 9.06 -89.70 -0.81 6.81 16 37 H 0.34 9.75 8.58 -89.69 -0.77 8.98 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.11 1.59 4.86 -2.39 -0.01 1.58 16 40 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.13 1.28 6.68 -2.39 -0.02 1.26 16 42 H 0.18 1.10 7.21 -2.91 -0.02 1.08 16 43 H 0.20 0.16 8.06 -2.91 -0.02 0.13 16 44 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 2.14 7.67 -2.39 -0.02 2.12 16 47 H 0.08 2.00 7.06 -2.39 -0.02 1.99 16 48 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -79.38 385.74 -0.61 -79.99 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.59 Total: 21.99 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.08 Total: -5.99 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -8.08 Total: -122.48 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -79.38 -0.61 -79.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594435961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.461 kcal (2) G-P(sol) polarization free energy of solvation -79.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds