Wall clock time and date at job start Tue Mar 31 2020 17:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46809 * 2 1 4 4 C 1.46504 * 119.99604 * 274.99759 * 3 2 1 5 5 C 1.50699 * 109.47250 * 275.00233 * 4 3 2 6 6 H 1.08000 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00330 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99683 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00356 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46875 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47059 * 120.00106 * 9 7 5 12 12 H 1.48495 * 109.47141 * 240.00128 * 9 7 5 13 13 S 1.65596 * 120.00254 * 95.00053 * 3 2 1 14 14 O 1.42105 * 106.40119 * 336.45798 * 13 3 2 15 15 O 1.42102 * 106.40211 * 203.53955 * 13 3 2 16 16 N 1.65599 * 107.21730 * 89.99806 * 13 3 2 17 17 C 1.46503 * 120.00146 * 65.00260 * 16 13 3 18 18 H 1.09007 * 110.34975 * 337.13815 * 17 16 13 19 19 C 1.54599 * 110.30831 * 99.27888 * 17 16 13 20 20 C 1.54937 * 102.91748 * 140.87434 * 19 17 16 21 21 N 1.48533 * 103.22804 * 322.58595 * 20 19 17 22 22 C 1.46904 * 110.99725 * 159.71927 * 21 20 19 23 23 C 1.52998 * 109.47339 * 307.38201 * 22 21 20 24 24 C 1.53000 * 109.46877 * 67.38728 * 22 21 20 25 25 C 1.52998 * 109.46892 * 187.38230 * 22 21 20 26 26 C 1.47902 * 105.82052 * 39.20894 * 21 20 19 27 27 H 1.08998 * 109.47020 * 299.99950 * 1 2 3 28 28 H 1.08993 * 109.47074 * 60.00503 * 1 2 3 29 29 H 1.09009 * 109.46497 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47361 * 239.99677 * 2 1 3 31 31 H 1.09003 * 109.47167 * 119.99414 * 2 1 3 32 32 H 1.09003 * 109.46995 * 34.99722 * 4 3 2 33 33 H 1.08996 * 109.47233 * 155.00124 * 4 3 2 34 34 H 0.97003 * 119.99861 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99889 * 244.99196 * 16 13 3 36 36 H 1.09002 * 110.72145 * 259.22895 * 19 17 16 37 37 H 1.08997 * 110.72329 * 22.51857 * 19 17 16 38 38 H 1.08997 * 110.66658 * 204.14876 * 20 19 17 39 39 H 1.09009 * 110.66771 * 81.02116 * 20 19 17 40 40 H 1.09008 * 109.46916 * 67.12693 * 23 22 21 41 41 H 1.09000 * 109.46788 * 187.12087 * 23 22 21 42 42 H 1.08992 * 109.47003 * 307.12762 * 23 22 21 43 43 H 1.08994 * 109.47424 * 59.99745 * 24 22 21 44 44 H 1.09000 * 109.46949 * 179.97438 * 24 22 21 45 45 H 1.09001 * 109.47109 * 299.99318 * 24 22 21 46 46 H 1.08998 * 109.47503 * 60.00099 * 25 22 21 47 47 H 1.09001 * 109.47153 * 180.02562 * 25 22 21 48 48 H 1.09007 * 109.47055 * 300.00377 * 25 22 21 49 49 H 1.09002 * 109.91840 * 94.02129 * 26 21 20 50 50 H 1.08993 * 109.91583 * 215.31997 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4947 1.7888 -1.8824 6 1 4.1720 1.1111 -1.3840 7 6 3.8529 2.3613 -3.0845 8 7 3.0283 3.1870 -3.6912 9 14 5.5099 1.9654 -3.8507 10 1 6.2457 1.0174 -2.9761 11 1 5.3032 1.3482 -5.1855 12 1 6.2976 3.2153 -3.9999 13 16 2.4121 2.1203 1.4286 14 8 1.6868 1.4416 2.4448 15 8 2.3055 3.5187 1.1997 16 7 4.0144 1.8139 1.7136 17 6 5.0350 2.3526 0.8113 18 1 4.6026 2.5650 -0.1665 19 6 5.6598 3.6331 1.4113 20 6 7.1583 3.4926 1.0434 21 7 7.4111 2.0372 1.1979 22 6 8.6092 1.6289 0.4522 23 6 8.4933 2.1028 -0.9980 24 6 9.8483 2.2545 1.0958 25 6 8.7336 0.1043 0.4822 26 6 6.2047 1.3605 0.6743 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3617 1.8096 -1.9454 33 1 2.0921 3.1802 -1.0758 34 1 3.2804 3.5900 -4.5367 35 1 4.2771 1.2778 2.4782 36 1 5.2314 4.5235 0.9509 37 1 5.5287 3.6558 2.4931 38 1 7.7788 4.0661 1.7319 39 1 7.3328 3.8063 0.0142 40 1 8.5320 3.1917 -1.0286 41 1 9.3184 1.6934 -1.5809 42 1 7.5472 1.7609 -1.4174 43 1 9.9308 1.9169 2.1289 44 1 10.7372 1.9513 0.5427 45 1 9.7596 3.3407 1.0744 46 1 7.8509 -0.3414 0.0237 47 1 9.6228 -0.1986 -0.0708 48 1 8.8161 -0.2333 1.5154 49 1 6.3503 1.1006 -0.3742 50 1 6.0002 0.4626 1.2573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594799240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:43 Heat of formation + Delta-G solvation = -74.640533 kcal Electronic energy + Delta-G solvation = -30093.350630 eV Core-core repulsion = 26282.248764 eV Total energy + Delta-G solvation = -3811.101866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.75125 -36.64568 -36.13705 -35.77390 -35.15064 -32.84330 -32.51973 -29.97107 -29.21367 -27.87910 -27.32399 -26.75030 -26.33545 -23.19433 -21.99653 -21.75623 -20.50333 -18.90150 -18.60068 -17.24763 -16.85010 -16.47468 -16.12732 -15.77573 -15.24234 -14.72942 -14.40622 -14.22461 -13.96871 -13.82011 -13.40864 -13.24478 -12.96193 -12.91884 -12.26473 -12.19070 -12.10404 -12.00868 -11.97519 -11.91167 -11.73280 -11.59925 -11.51825 -11.39490 -11.30288 -11.18145 -11.13465 -10.97046 -10.80839 -10.79213 -10.56564 -10.50560 -10.43799 -10.21521 -10.06564 -9.74864 -8.98072 -8.60986 -8.16421 -8.09079 -6.23145 -4.29578 1.35109 3.12256 3.19145 3.22695 3.57513 4.09557 4.20441 4.23541 4.78114 4.87830 4.98432 5.07994 5.10167 5.18540 5.22722 5.41997 5.51394 5.57032 5.60866 5.64328 5.73323 5.75971 5.78359 5.81126 5.81648 5.89051 5.90156 5.95914 6.03189 6.12121 6.16278 6.17588 6.18619 6.28012 6.32380 6.47973 6.48812 6.64613 6.68065 6.78576 7.12975 7.26497 7.30521 7.34552 7.48885 7.65622 7.76510 8.05032 8.75351 9.35108 10.84150 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.005986 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.350917 B = 4676.635825 C = 6137.158277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.993 5.993 4 C 0.242 3.758 5 C -0.545 4.545 6 H 0.068 0.932 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.882 3.118 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.281 1.281 13 S 2.784 3.216 14 O -1.003 7.003 15 O -0.979 6.979 16 N -1.118 6.118 17 C 0.127 3.873 18 H 0.140 0.860 19 C -0.137 4.137 20 C 0.028 3.972 21 N -0.504 5.504 22 C 0.092 3.908 23 C -0.193 4.193 24 C -0.132 4.132 25 C -0.140 4.140 26 C 0.029 3.971 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -4.476 7.197 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.835 5.835 4 C 0.119 3.881 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.709 3.291 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.206 1.206 13 S 2.792 3.208 14 O -0.987 6.987 15 O -0.962 6.962 16 N -0.875 5.875 17 C 0.020 3.980 18 H 0.157 0.843 19 C -0.177 4.177 20 C -0.100 4.100 21 N -0.229 5.229 22 C 0.002 3.998 23 C -0.251 4.251 24 C -0.190 4.190 25 C -0.198 4.198 26 C -0.100 4.100 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.049 -3.872 7.957 11.962 hybrid contribution 1.220 -0.487 -1.473 1.974 sum 9.269 -4.359 6.484 12.122 Atomic orbital electron populations 1.22208 0.97007 1.01352 1.02365 1.20955 0.93599 0.82872 1.02076 1.57718 1.78729 1.22920 1.24112 1.19222 0.97255 0.92366 0.79230 1.21628 1.02467 1.28123 1.06162 0.91399 1.24948 0.97034 0.94776 0.96789 1.69938 1.35740 1.29264 1.16936 0.86740 0.84171 0.78503 0.79656 1.19149 1.20881 1.20642 1.01787 0.72687 0.73765 0.72577 1.93541 1.70682 1.76304 1.58184 1.93578 1.85931 1.31077 1.85655 1.56074 1.25283 1.68203 1.37976 1.22183 0.88746 0.91662 0.95442 0.84325 1.22993 0.94105 0.98872 1.01681 1.23325 0.96624 0.89504 1.00550 1.65057 1.01805 1.04876 1.51145 1.21187 0.91583 0.95632 0.91443 1.22664 1.03072 1.01956 0.97423 1.21782 0.95850 1.00504 1.00860 1.21889 1.01735 0.93982 1.02145 1.23206 0.89303 0.97692 0.99823 0.92667 0.92104 0.92392 0.90280 0.91916 0.94307 0.93048 0.92499 0.76171 0.90162 0.90737 0.90367 0.92626 0.91949 0.92290 0.91318 0.92036 0.92644 0.92725 0.92333 0.92530 0.91979 0.91887 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.13 2.24 6.06 -4.04 -0.02 2.21 16 3 N -0.99 -19.77 2.83 -115.66 -0.33 -20.09 16 4 C 0.24 5.69 5.32 -5.19 -0.03 5.66 16 5 C -0.54 -13.11 6.92 -34.44 -0.24 -13.35 16 6 H 0.07 1.55 6.97 -52.49 -0.37 1.19 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.88 -23.95 13.29 55.43 0.74 -23.21 16 9 Si 0.88 19.32 29.17 -169.99 -4.96 14.36 16 10 H -0.27 -5.50 6.30 56.52 0.36 -5.14 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 S 2.78 54.59 6.02 -107.50 -0.65 53.94 16 14 O -1.00 -20.43 17.11 -57.17 -0.98 -21.41 16 15 O -0.98 -22.43 16.45 -57.17 -0.94 -23.37 16 16 N -1.12 -18.39 5.49 -3.73 -0.02 -18.41 16 17 C 0.13 2.18 3.19 -66.57 -0.21 1.97 16 18 H 0.14 2.82 4.45 -51.92 -0.23 2.59 16 19 C -0.14 -2.15 6.78 -24.87 -0.17 -2.32 16 20 C 0.03 0.39 5.48 -1.90 -0.01 0.38 16 21 N -0.50 -6.97 5.09 -214.86 -1.09 -8.07 16 22 C 0.09 1.14 0.69 -131.60 -0.09 1.05 16 23 C -0.19 -2.64 7.59 37.16 0.28 -2.36 16 24 C -0.13 -1.40 8.48 37.16 0.32 -1.09 16 25 C -0.14 -1.62 8.27 37.16 0.31 -1.31 16 26 C 0.03 0.44 4.87 -2.76 -0.01 0.43 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 30 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 31 H 0.06 0.96 7.61 -51.93 -0.40 0.56 16 32 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.05 1.34 6.91 -51.93 -0.36 0.99 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 35 H 0.41 5.64 8.70 -34.47 -0.30 5.34 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.11 8.06 -51.93 -0.42 0.70 16 38 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 39 H 0.06 0.81 5.54 -51.92 -0.29 0.52 16 40 H 0.06 0.84 6.36 -51.92 -0.33 0.51 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.11 4.85 -51.93 -0.25 0.86 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.57 7.15 -51.93 -0.37 0.20 16 46 H 0.06 0.73 6.77 -51.93 -0.35 0.38 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 1.06 5.29 -51.93 -0.27 0.78 16 50 H 0.08 1.15 7.78 -51.93 -0.40 0.74 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -28.88 387.29 -10.56 -39.44 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.57 Total: 10.36 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.40 Total: -9.38 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -0.70 Total: -69.78 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.92 Total: -44.78 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.96 Total: 14.36 kcal Atomic # 16 Polarization: 54.59 SS G_CDS: -0.65 Total: 53.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.88 -10.56 -39.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594799240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.198 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds