Wall clock time and date at job start Tue Mar 31 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46809 * 2 1 4 4 C 1.46504 * 119.99604 * 274.99759 * 3 2 1 5 5 C 1.50699 * 109.47250 * 275.00233 * 4 3 2 6 6 H 1.08000 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00330 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99683 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00356 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46875 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47059 * 120.00106 * 9 7 5 12 12 H 1.48495 * 109.47141 * 240.00128 * 9 7 5 13 13 S 1.65596 * 120.00254 * 95.00053 * 3 2 1 14 14 O 1.42105 * 106.40119 * 336.45798 * 13 3 2 15 15 O 1.42102 * 106.40211 * 203.53955 * 13 3 2 16 16 N 1.65599 * 107.21730 * 89.99806 * 13 3 2 17 17 C 1.46503 * 120.00146 * 65.00260 * 16 13 3 18 18 H 1.09007 * 110.34975 * 337.13815 * 17 16 13 19 19 C 1.54599 * 110.30831 * 99.27888 * 17 16 13 20 20 C 1.54937 * 102.91748 * 140.87434 * 19 17 16 21 21 N 1.48533 * 103.22804 * 322.58595 * 20 19 17 22 22 C 1.46904 * 110.99725 * 159.71927 * 21 20 19 23 23 C 1.52998 * 109.47339 * 307.38201 * 22 21 20 24 24 C 1.53000 * 109.46877 * 67.38728 * 22 21 20 25 25 C 1.52998 * 109.46892 * 187.38230 * 22 21 20 26 26 C 1.47902 * 105.82052 * 39.20894 * 21 20 19 27 27 H 1.08998 * 109.47020 * 299.99950 * 1 2 3 28 28 H 1.08993 * 109.47074 * 60.00503 * 1 2 3 29 29 H 1.09009 * 109.46497 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47361 * 239.99677 * 2 1 3 31 31 H 1.09003 * 109.47167 * 119.99414 * 2 1 3 32 32 H 1.09003 * 109.46995 * 34.99722 * 4 3 2 33 33 H 1.08996 * 109.47233 * 155.00124 * 4 3 2 34 34 H 0.97003 * 119.99861 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99889 * 244.99196 * 16 13 3 36 36 H 1.09002 * 110.72145 * 259.22895 * 19 17 16 37 37 H 1.08997 * 110.72329 * 22.51857 * 19 17 16 38 38 H 1.08997 * 110.66658 * 204.14876 * 20 19 17 39 39 H 1.09009 * 110.66771 * 81.02116 * 20 19 17 40 40 H 1.09008 * 109.46916 * 67.12693 * 23 22 21 41 41 H 1.09000 * 109.46788 * 187.12087 * 23 22 21 42 42 H 1.08992 * 109.47003 * 307.12762 * 23 22 21 43 43 H 1.08994 * 109.47424 * 59.99745 * 24 22 21 44 44 H 1.09000 * 109.46949 * 179.97438 * 24 22 21 45 45 H 1.09001 * 109.47109 * 299.99318 * 24 22 21 46 46 H 1.08998 * 109.47503 * 60.00099 * 25 22 21 47 47 H 1.09001 * 109.47153 * 180.02562 * 25 22 21 48 48 H 1.09007 * 109.47055 * 300.00377 * 25 22 21 49 49 H 1.09002 * 109.91840 * 94.02129 * 26 21 20 50 50 H 1.08993 * 109.91583 * 215.31997 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4947 1.7888 -1.8824 6 1 4.1720 1.1111 -1.3840 7 6 3.8529 2.3613 -3.0845 8 7 3.0283 3.1870 -3.6912 9 14 5.5099 1.9654 -3.8507 10 1 6.2457 1.0174 -2.9761 11 1 5.3032 1.3482 -5.1855 12 1 6.2976 3.2153 -3.9999 13 16 2.4121 2.1203 1.4286 14 8 1.6868 1.4416 2.4448 15 8 2.3055 3.5187 1.1997 16 7 4.0144 1.8139 1.7136 17 6 5.0350 2.3526 0.8113 18 1 4.6026 2.5650 -0.1665 19 6 5.6598 3.6331 1.4113 20 6 7.1583 3.4926 1.0434 21 7 7.4111 2.0372 1.1979 22 6 8.6092 1.6289 0.4522 23 6 8.4933 2.1028 -0.9980 24 6 9.8483 2.2545 1.0958 25 6 8.7336 0.1043 0.4822 26 6 6.2047 1.3605 0.6743 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3617 1.8096 -1.9454 33 1 2.0921 3.1802 -1.0758 34 1 3.2804 3.5900 -4.5367 35 1 4.2771 1.2778 2.4782 36 1 5.2314 4.5235 0.9509 37 1 5.5287 3.6558 2.4931 38 1 7.7788 4.0661 1.7319 39 1 7.3328 3.8063 0.0142 40 1 8.5320 3.1917 -1.0286 41 1 9.3184 1.6934 -1.5809 42 1 7.5472 1.7609 -1.4174 43 1 9.9308 1.9169 2.1289 44 1 10.7372 1.9513 0.5427 45 1 9.7596 3.3407 1.0744 46 1 7.8509 -0.3414 0.0237 47 1 9.6228 -0.1986 -0.0708 48 1 8.8161 -0.2333 1.5154 49 1 6.3503 1.1006 -0.3742 50 1 6.0002 0.4626 1.2573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594799240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:42 Heat of formation + Delta-G solvation = -95.800020 kcal Electronic energy + Delta-G solvation = -30094.268174 eV Core-core repulsion = 26282.248764 eV Total energy + Delta-G solvation = -3812.019410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88204 -38.29843 -37.71794 -37.04485 -36.85198 -34.71121 -33.76678 -31.53574 -30.33471 -29.06521 -28.47621 -28.30698 -27.41417 -24.94553 -23.30369 -23.13568 -21.81702 -20.46944 -19.64683 -18.83875 -18.55393 -18.19210 -17.48019 -17.07420 -16.82941 -16.26878 -15.76119 -15.26274 -15.24258 -15.13702 -14.86511 -14.67703 -14.46337 -14.10969 -13.81335 -13.63516 -13.44177 -13.31875 -13.26861 -13.12618 -13.10541 -13.02434 -12.93324 -12.83639 -12.71505 -12.62043 -12.49656 -12.29325 -12.20517 -12.14018 -11.98488 -11.86395 -11.70977 -11.61109 -11.44894 -11.39703 -10.59539 -10.37669 -9.78192 -9.28606 -8.18525 -6.29953 -0.25089 1.36563 1.39697 1.48677 2.02310 2.38358 2.64691 3.01167 3.13038 3.48885 3.66213 3.73020 3.98808 4.00244 4.06482 4.21609 4.29646 4.38450 4.43705 4.45844 4.49598 4.57889 4.64175 4.72198 4.72682 4.75591 4.89205 4.94694 4.96292 5.00144 5.01328 5.02972 5.05168 5.15877 5.18356 5.25048 5.28519 5.31585 5.41145 5.45302 5.50146 5.56259 5.76164 5.90960 5.97571 6.10055 6.19675 6.28537 6.81573 7.38111 8.89523 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.005986 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.350917 B = 4676.635825 C = 6137.158277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.257 3.743 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.019 3.981 8 N -0.924 5.924 9 Si 0.937 3.063 10 H -0.245 1.245 11 H -0.287 1.287 12 H -0.283 1.283 13 S 2.797 3.203 14 O -1.008 7.008 15 O -1.016 7.016 16 N -1.102 6.102 17 C 0.123 3.877 18 H 0.106 0.894 19 C -0.138 4.138 20 C 0.033 3.967 21 N -0.499 5.499 22 C 0.088 3.912 23 C -0.193 4.193 24 C -0.127 4.127 25 C -0.138 4.138 26 C 0.037 3.963 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.264 0.736 35 H 0.421 0.579 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.050 0.950 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 -6.269 8.463 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.133 3.867 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.181 4.181 8 N -0.563 5.563 9 Si 0.763 3.237 10 H -0.169 1.169 11 H -0.213 1.213 12 H -0.209 1.209 13 S 2.805 3.195 14 O -0.992 6.992 15 O -0.999 6.999 16 N -0.863 5.863 17 C 0.015 3.985 18 H 0.124 0.876 19 C -0.178 4.178 20 C -0.095 4.095 21 N -0.223 5.223 22 C -0.002 4.002 23 C -0.252 4.252 24 C -0.185 4.185 25 C -0.195 4.195 26 C -0.093 4.093 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.257 0.743 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.428 -5.701 9.259 15.066 hybrid contribution 0.447 0.061 -1.810 1.866 sum 10.876 -5.640 7.449 14.338 Atomic orbital electron populations 1.22199 0.96054 1.03216 1.01272 1.21247 0.94537 0.81255 1.03322 1.57620 1.79363 1.24044 1.22690 1.18781 0.96743 0.90850 0.80306 1.21853 1.02447 1.27281 1.05691 0.90156 1.25689 1.00127 0.94768 0.97529 1.70068 1.37782 1.30974 1.17515 0.85853 0.80573 0.78533 0.78771 1.16853 1.21280 1.20905 1.01223 0.73213 0.72854 0.72192 1.93527 1.71365 1.76135 1.58139 1.93534 1.86708 1.33591 1.86098 1.55686 1.23913 1.68306 1.38445 1.22078 0.89157 0.93173 0.94043 0.87632 1.22979 0.95394 0.97420 1.02018 1.23314 0.95456 0.90059 1.00674 1.65132 1.01678 1.04429 1.51077 1.21344 0.91633 0.96551 0.90687 1.22674 1.02169 1.01910 0.98422 1.21747 0.95243 1.00361 1.01132 1.21880 1.01894 0.93001 1.02741 1.23099 0.89153 0.97636 0.99372 0.93566 0.93370 0.89072 0.89963 0.89640 0.96079 0.96437 0.92677 0.74299 0.91930 0.89708 0.88209 0.93377 0.92141 0.90813 0.93934 0.91564 0.91138 0.92725 0.93575 0.90999 0.91279 0.93236 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 10.24 71.98 0.74 -4.38 16 2 C 0.12 4.00 6.06 86.38 0.52 4.53 16 3 N -1.00 -39.90 2.83 -519.83 -1.47 -41.37 16 4 C 0.26 12.52 5.32 85.63 0.46 12.98 16 5 C -0.53 -26.07 6.92 25.60 0.18 -25.89 16 6 H 0.08 3.65 6.97 -2.91 -0.02 3.63 16 7 C 0.02 0.98 5.46 84.65 0.46 1.44 16 8 N -0.92 -51.91 13.29 21.45 0.28 -51.62 16 9 Si 0.94 39.90 29.17 68.60 2.00 41.90 16 10 H -0.25 -9.47 6.30 99.48 0.63 -8.84 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 S 2.80 109.62 6.02 -56.49 -0.34 109.28 16 14 O -1.01 -40.00 17.11 -128.00 -2.19 -42.19 16 15 O -1.02 -47.89 16.45 -128.00 -2.11 -50.00 16 16 N -1.10 -35.13 5.49 -165.72 -0.91 -36.04 16 17 C 0.12 4.15 3.19 45.87 0.15 4.30 16 18 H 0.11 4.35 4.45 -2.38 -0.01 4.34 16 19 C -0.14 -4.27 6.78 31.80 0.22 -4.06 16 20 C 0.03 0.86 5.48 86.65 0.47 1.34 16 21 N -0.50 -12.60 5.09 -833.67 -4.24 -16.85 16 22 C 0.09 1.94 0.69 3.53 0.00 1.94 16 23 C -0.19 -4.87 7.59 71.98 0.55 -4.32 16 24 C -0.13 -2.25 8.48 71.98 0.61 -1.64 16 25 C -0.14 -2.75 8.27 71.98 0.60 -2.16 16 26 C 0.04 1.07 4.87 86.44 0.42 1.49 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 31 H 0.09 2.42 7.61 -2.39 -0.02 2.41 16 32 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 33 H 0.02 0.97 6.91 -2.39 -0.02 0.96 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.42 10.84 8.70 -96.74 -0.84 9.99 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.42 8.06 -2.39 -0.02 2.40 16 38 H 0.10 2.20 7.72 -2.39 -0.02 2.18 16 39 H 0.05 1.34 5.54 -2.38 -0.01 1.33 16 40 H 0.06 1.52 6.36 -2.38 -0.02 1.50 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 1.30 4.85 -2.39 -0.01 1.28 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 0.97 7.15 -2.39 -0.02 0.95 16 46 H 0.05 1.03 6.77 -2.39 -0.02 1.02 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.07 1.28 8.14 -2.38 -0.02 1.27 16 49 H 0.05 1.59 5.29 -2.39 -0.01 1.58 16 50 H 0.09 2.44 7.78 -2.39 -0.02 2.42 16 Total: -1.00 -63.09 387.29 -3.60 -66.68 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.01 Total: 34.65 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 5.37 Total: -14.44 kcal Atomic # 7 Polarization: -139.54 SS G_CDS: -6.34 Total: -145.87 kcal Atomic # 8 Polarization: -87.90 SS G_CDS: -4.30 Total: -92.19 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.00 Total: 41.90 kcal Atomic # 16 Polarization: 109.62 SS G_CDS: -0.34 Total: 109.28 kcal Total: -63.09 -3.60 -66.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594799240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.120 kcal (2) G-P(sol) polarization free energy of solvation -63.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds