Wall clock time and date at job start Tue Mar 31 2020 17:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46845 * 2 1 4 4 C 1.50701 * 109.47381 * 119.99761 * 2 1 3 5 5 H 1.08001 * 119.99816 * 119.99985 * 4 2 1 6 6 C 1.37875 * 119.99948 * 300.00547 * 4 2 1 7 7 N 1.31506 * 120.00251 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99851 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47451 * 89.99639 * 8 6 4 10 10 H 1.48504 * 109.47148 * 209.99921 * 8 6 4 11 11 H 1.48503 * 109.46956 * 329.99580 * 8 6 4 12 12 N 1.46497 * 109.47350 * 240.00088 * 2 1 3 13 13 C 1.46499 * 120.00060 * 301.37961 * 12 2 1 14 14 S 1.65603 * 120.00027 * 121.37390 * 12 2 1 15 15 O 1.42096 * 106.40035 * 162.54006 * 14 12 2 16 16 O 1.42106 * 106.40208 * 29.62438 * 14 12 2 17 17 N 1.65593 * 107.22188 * 276.08397 * 14 12 2 18 18 C 1.46503 * 119.99824 * 294.44008 * 17 14 12 19 19 H 1.08995 * 110.87804 * 28.17809 * 18 17 14 20 20 C 1.55142 * 110.98648 * 264.33417 * 18 17 14 21 21 C 1.54326 * 103.01776 * 206.21359 * 20 18 17 22 22 N 1.47443 * 107.23204 * 22.29200 * 21 20 18 23 23 C 1.46898 * 111.00447 * 123.25233 * 22 21 20 24 24 C 1.53000 * 109.46806 * 62.82901 * 23 22 21 25 25 C 1.52997 * 109.47380 * 182.82607 * 23 22 21 26 26 C 1.52998 * 109.47048 * 302.83055 * 23 22 21 27 27 C 1.47854 * 108.56805 * 0.98119 * 22 21 20 28 28 H 1.09001 * 109.47342 * 306.40871 * 1 2 3 29 29 H 1.08999 * 109.47317 * 66.40806 * 1 2 3 30 30 H 1.09007 * 109.47030 * 186.40979 * 1 2 3 31 31 H 0.97002 * 120.00223 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46605 * 269.99643 * 13 12 2 33 33 H 1.09005 * 109.47031 * 29.99537 * 13 12 2 34 34 H 1.08998 * 109.47159 * 149.99768 * 13 12 2 35 35 H 0.97000 * 120.00517 * 114.43627 * 17 14 12 36 36 H 1.09006 * 110.70619 * 87.83869 * 20 18 17 37 37 H 1.08997 * 110.85759 * 324.66981 * 20 18 17 38 38 H 1.08994 * 109.89032 * 262.87973 * 21 20 18 39 39 H 1.09008 * 109.88343 * 141.69114 * 21 20 18 40 40 H 1.08994 * 109.47608 * 59.99952 * 24 23 22 41 41 H 1.08996 * 109.47169 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.47093 * 299.99879 * 24 23 22 43 43 H 1.09000 * 109.46679 * 59.99928 * 25 23 22 44 44 H 1.08996 * 109.47495 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.46972 * 300.00249 * 25 23 22 46 46 H 1.08998 * 109.47463 * 62.61156 * 26 23 22 47 47 H 1.08997 * 109.47026 * 182.61700 * 26 23 22 48 48 H 1.09003 * 109.46815 * 302.61353 * 26 23 22 49 49 H 1.08997 * 110.36911 * 94.73616 * 27 22 21 50 50 H 1.08994 * 110.37598 * 217.07915 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.6297 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1121 11 1 2.4859 -2.5662 3.7120 12 7 2.0183 -0.6906 -1.1961 13 6 1.6397 -2.0840 -1.4434 14 16 2.9983 0.1040 -2.2689 15 8 3.6212 -0.8977 -3.0611 16 8 3.7269 1.0619 -1.5132 17 7 2.0152 0.9622 -3.2882 18 6 1.1096 0.2569 -4.1986 19 1 0.8212 -0.7104 -3.7874 20 6 1.7485 0.0955 -5.6031 21 6 0.5214 -0.0023 -6.5340 22 7 -0.6131 0.6209 -5.8280 23 6 -1.1952 1.7093 -6.6245 24 6 -1.7572 1.1420 -7.9296 25 6 -2.3211 2.3759 -5.8316 26 6 -0.1134 2.7436 -6.9421 27 6 -0.1377 1.1178 -4.5192 28 1 -0.3634 0.6100 0.8271 29 1 -0.3634 0.4113 -0.9418 30 1 -0.3633 -1.0213 0.1147 31 1 0.7094 1.1617 3.4844 32 1 2.3730 -2.7467 -0.9839 33 1 0.6568 -2.2753 -1.0127 34 1 1.6075 -2.2667 -2.5175 35 1 2.0387 1.9319 -3.2825 36 1 2.3438 -0.8162 -5.6533 37 1 2.3555 0.9649 -5.8556 38 1 0.2981 -1.0481 -6.7444 39 1 0.7180 0.5316 -7.4638 40 1 -2.5277 0.4051 -7.7035 41 1 -2.1886 1.9496 -8.5208 42 1 -0.9550 0.6671 -8.4946 43 1 -1.9207 2.7800 -4.9018 44 1 -2.7533 3.1832 -6.4228 45 1 -3.0918 1.6389 -5.6054 46 1 0.6662 2.2802 -7.5465 47 1 -0.5551 3.5739 -7.4931 48 1 0.3193 3.1138 -6.0126 49 1 0.1358 2.1705 -4.5897 50 1 -0.9040 0.9740 -3.7575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594799260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:18 Heat of formation + Delta-G solvation = -68.260156 kcal Electronic energy + Delta-G solvation = -29211.369342 eV Core-core repulsion = 25400.544150 eV Total energy + Delta-G solvation = -3810.825192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.17156 -36.71024 -36.23641 -36.00060 -35.21945 -32.89981 -32.56585 -29.63399 -29.10698 -28.19481 -27.56754 -26.65953 -25.58928 -25.10528 -22.23553 -21.14214 -20.76302 -19.19455 -18.59662 -17.37571 -16.92494 -16.78532 -16.24962 -15.62976 -15.35681 -14.88645 -14.63739 -14.27499 -14.26913 -13.88393 -13.48375 -13.24404 -12.96840 -12.85634 -12.73147 -12.37297 -12.31451 -12.08759 -12.01861 -11.96253 -11.86517 -11.72785 -11.51621 -11.37957 -11.35480 -11.25787 -11.22456 -11.05017 -10.97845 -10.86750 -10.80654 -10.63135 -10.46622 -10.25421 -10.01148 -9.33467 -9.23580 -8.45555 -8.41871 -7.97661 -6.06855 -4.12456 1.20511 3.30205 3.36283 3.37045 3.40940 3.81680 4.12566 4.41140 4.45892 4.49794 4.69482 4.77362 4.86826 4.98033 5.01855 5.07929 5.25218 5.29591 5.31596 5.35135 5.38801 5.51427 5.52500 5.61412 5.64322 5.66522 5.70639 5.83179 5.88418 5.91079 6.00970 6.05457 6.14157 6.16326 6.25864 6.39687 6.62942 6.75878 6.81647 6.82974 6.96621 7.00501 7.14332 7.47707 7.63966 7.79274 8.03342 8.27833 8.89442 9.53264 10.99345 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.003425 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.955215 B = 8172.092330 C = 8860.635507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.271 3.729 3 H 0.054 0.946 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.779 3.221 15 O -0.994 6.994 16 O -0.975 6.975 17 N -1.124 6.124 18 C 0.151 3.849 19 H 0.099 0.901 20 C -0.159 4.159 21 C 0.038 3.962 22 N -0.514 5.514 23 C 0.095 3.905 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.184 4.184 27 C 0.036 3.964 28 H 0.088 0.912 29 H 0.012 0.988 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.411 0.589 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 1.710 -19.501 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.168 3.832 3 H 0.071 0.929 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.978 6.978 16 O -0.958 6.958 17 N -0.880 5.880 18 C 0.042 3.958 19 H 0.117 0.883 20 C -0.199 4.199 21 C -0.090 4.090 22 N -0.239 5.239 23 C 0.006 3.994 24 C -0.194 4.194 25 C -0.199 4.199 26 C -0.243 4.243 27 C -0.093 4.093 28 H 0.107 0.893 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.243 0.757 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.731 1.219 -19.319 20.188 hybrid contribution 0.536 0.658 0.815 1.176 sum -5.196 1.877 -18.504 19.311 Atomic orbital electron populations 1.22085 0.98104 1.00687 0.99467 1.18677 0.91306 0.92603 0.80583 0.92851 1.21335 1.31536 1.12993 0.90063 0.91981 1.24898 0.94936 0.95022 0.98989 1.69866 1.36618 1.22750 1.23744 0.86505 0.78644 0.79998 0.82302 1.20580 1.21202 1.19871 1.57694 1.68888 1.20588 1.36130 1.21187 1.01602 0.82304 0.98747 1.01982 0.73640 0.73137 0.72487 1.93537 1.73959 1.59802 1.70474 1.93622 1.69445 1.62579 1.70202 1.56236 1.58522 1.18793 1.54469 1.21707 0.88869 0.95859 0.89363 0.88292 1.23303 0.97944 1.03580 0.95102 1.22878 0.88919 1.00447 0.96737 1.63853 1.29268 1.27923 1.02834 1.21218 0.94430 0.89910 0.93881 1.21851 1.01220 1.00966 0.95399 1.21888 0.97913 1.00189 0.99867 1.22556 0.99750 0.99847 1.02118 1.23343 0.96338 0.97833 0.91805 0.89343 0.96931 0.94568 0.92753 0.93300 0.90936 0.93153 0.75664 0.89635 0.91012 0.90282 0.91957 0.91723 0.92411 0.92648 0.92339 0.92371 0.91655 0.92208 0.92097 0.92085 0.92284 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.68 37.15 0.32 -2.86 16 2 C 0.27 6.52 2.59 -69.09 -0.18 6.34 16 3 H 0.05 1.42 7.11 -51.93 -0.37 1.05 16 4 C -0.52 -13.98 8.39 -34.44 -0.29 -14.27 16 5 H 0.06 1.67 7.69 -52.49 -0.40 1.27 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.66 11.39 55.43 0.63 -24.03 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.99 -20.17 3.12 -115.86 -0.36 -20.53 16 13 C 0.11 1.91 9.52 59.85 0.57 2.48 16 14 S 2.78 53.53 6.04 -107.50 -0.65 52.88 16 15 O -0.99 -20.06 16.76 -57.17 -0.96 -21.02 16 16 O -0.97 -22.66 16.92 -57.17 -0.97 -23.63 16 17 N -1.12 -16.24 5.71 -3.08 -0.02 -16.26 16 18 C 0.15 1.90 3.57 -65.79 -0.23 1.67 16 19 H 0.10 1.30 7.08 -51.93 -0.37 0.93 16 20 C -0.16 -1.79 6.64 -24.90 -0.17 -1.96 16 21 C 0.04 0.37 5.60 -2.83 -0.02 0.35 16 22 N -0.51 -5.20 5.00 -215.63 -1.08 -6.28 16 23 C 0.10 0.82 0.66 -131.60 -0.09 0.74 16 24 C -0.14 -1.03 8.39 37.16 0.31 -0.72 16 25 C -0.14 -1.19 8.30 37.16 0.31 -0.88 16 26 C -0.18 -1.51 7.91 37.16 0.29 -1.22 16 27 C 0.04 0.40 4.77 -2.29 -0.01 0.39 16 28 H 0.09 2.17 6.27 -51.93 -0.33 1.85 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.77 6.90 -51.93 -0.36 0.41 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.23 6.49 -51.93 -0.34 0.89 16 34 H 0.05 0.75 6.74 -51.93 -0.35 0.40 16 35 H 0.41 5.23 8.73 -34.47 -0.30 4.93 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.53 4.77 -51.92 -0.25 0.29 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.41 6.68 -51.93 -0.35 0.06 16 43 H 0.06 0.53 6.87 -51.93 -0.36 0.17 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.49 6.26 -51.93 -0.32 0.16 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.54 6.09 -51.93 -0.32 0.23 16 49 H 0.06 0.62 5.26 -51.93 -0.27 0.35 16 50 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -31.35 386.93 -10.32 -41.67 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.46 Total: 3.50 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 0.73 Total: -8.31 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -0.82 Total: -67.10 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.93 Total: -44.64 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.65 Total: 52.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.35 -10.32 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594799260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.587 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds