Wall clock time and date at job start Tue Mar 31 2020 17:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46845 * 2 1 4 4 C 1.50701 * 109.47381 * 119.99761 * 2 1 3 5 5 H 1.08001 * 119.99816 * 119.99985 * 4 2 1 6 6 C 1.37875 * 119.99948 * 300.00547 * 4 2 1 7 7 N 1.31506 * 120.00251 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99851 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47451 * 89.99639 * 8 6 4 10 10 H 1.48504 * 109.47148 * 209.99921 * 8 6 4 11 11 H 1.48503 * 109.46956 * 329.99580 * 8 6 4 12 12 N 1.46497 * 109.47350 * 240.00088 * 2 1 3 13 13 C 1.46499 * 120.00060 * 301.37961 * 12 2 1 14 14 S 1.65603 * 120.00027 * 121.37390 * 12 2 1 15 15 O 1.42096 * 106.40035 * 162.54006 * 14 12 2 16 16 O 1.42106 * 106.40208 * 29.62438 * 14 12 2 17 17 N 1.65593 * 107.22188 * 276.08397 * 14 12 2 18 18 C 1.46503 * 119.99824 * 294.44008 * 17 14 12 19 19 H 1.08995 * 110.87804 * 28.17809 * 18 17 14 20 20 C 1.55142 * 110.98648 * 264.33417 * 18 17 14 21 21 C 1.54326 * 103.01776 * 206.21359 * 20 18 17 22 22 N 1.47443 * 107.23204 * 22.29200 * 21 20 18 23 23 C 1.46898 * 111.00447 * 123.25233 * 22 21 20 24 24 C 1.53000 * 109.46806 * 62.82901 * 23 22 21 25 25 C 1.52997 * 109.47380 * 182.82607 * 23 22 21 26 26 C 1.52998 * 109.47048 * 302.83055 * 23 22 21 27 27 C 1.47854 * 108.56805 * 0.98119 * 22 21 20 28 28 H 1.09001 * 109.47342 * 306.40871 * 1 2 3 29 29 H 1.08999 * 109.47317 * 66.40806 * 1 2 3 30 30 H 1.09007 * 109.47030 * 186.40979 * 1 2 3 31 31 H 0.97002 * 120.00223 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46605 * 269.99643 * 13 12 2 33 33 H 1.09005 * 109.47031 * 29.99537 * 13 12 2 34 34 H 1.08998 * 109.47159 * 149.99768 * 13 12 2 35 35 H 0.97000 * 120.00517 * 114.43627 * 17 14 12 36 36 H 1.09006 * 110.70619 * 87.83869 * 20 18 17 37 37 H 1.08997 * 110.85759 * 324.66981 * 20 18 17 38 38 H 1.08994 * 109.89032 * 262.87973 * 21 20 18 39 39 H 1.09008 * 109.88343 * 141.69114 * 21 20 18 40 40 H 1.08994 * 109.47608 * 59.99952 * 24 23 22 41 41 H 1.08996 * 109.47169 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.47093 * 299.99879 * 24 23 22 43 43 H 1.09000 * 109.46679 * 59.99928 * 25 23 22 44 44 H 1.08996 * 109.47495 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.46972 * 300.00249 * 25 23 22 46 46 H 1.08998 * 109.47463 * 62.61156 * 26 23 22 47 47 H 1.08997 * 109.47026 * 182.61700 * 26 23 22 48 48 H 1.09003 * 109.46815 * 302.61353 * 26 23 22 49 49 H 1.08997 * 110.36911 * 94.73616 * 27 22 21 50 50 H 1.08994 * 110.37598 * 217.07915 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.6297 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1121 11 1 2.4859 -2.5662 3.7120 12 7 2.0183 -0.6906 -1.1961 13 6 1.6397 -2.0840 -1.4434 14 16 2.9983 0.1040 -2.2689 15 8 3.6212 -0.8977 -3.0611 16 8 3.7269 1.0619 -1.5132 17 7 2.0152 0.9622 -3.2882 18 6 1.1096 0.2569 -4.1986 19 1 0.8212 -0.7104 -3.7874 20 6 1.7485 0.0955 -5.6031 21 6 0.5214 -0.0023 -6.5340 22 7 -0.6131 0.6209 -5.8280 23 6 -1.1952 1.7093 -6.6245 24 6 -1.7572 1.1420 -7.9296 25 6 -2.3211 2.3759 -5.8316 26 6 -0.1134 2.7436 -6.9421 27 6 -0.1377 1.1178 -4.5192 28 1 -0.3634 0.6100 0.8271 29 1 -0.3634 0.4113 -0.9418 30 1 -0.3633 -1.0213 0.1147 31 1 0.7094 1.1617 3.4844 32 1 2.3730 -2.7467 -0.9839 33 1 0.6568 -2.2753 -1.0127 34 1 1.6075 -2.2667 -2.5175 35 1 2.0387 1.9319 -3.2825 36 1 2.3438 -0.8162 -5.6533 37 1 2.3555 0.9649 -5.8556 38 1 0.2981 -1.0481 -6.7444 39 1 0.7180 0.5316 -7.4638 40 1 -2.5277 0.4051 -7.7035 41 1 -2.1886 1.9496 -8.5208 42 1 -0.9550 0.6671 -8.4946 43 1 -1.9207 2.7800 -4.9018 44 1 -2.7533 3.1832 -6.4228 45 1 -3.0918 1.6389 -5.6054 46 1 0.6662 2.2802 -7.5465 47 1 -0.5551 3.5739 -7.4931 48 1 0.3193 3.1138 -6.0126 49 1 0.1358 2.1705 -4.5897 50 1 -0.9040 0.9740 -3.7575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594799260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:18 Heat of formation + Delta-G solvation = -91.552927 kcal Electronic energy + Delta-G solvation = -29212.379393 eV Core-core repulsion = 25400.544150 eV Total energy + Delta-G solvation = -3811.835243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97429 -38.32816 -37.90956 -37.03106 -36.88399 -34.51919 -33.88115 -30.91964 -30.42485 -29.07203 -28.19333 -27.41727 -27.28024 -26.96385 -23.05754 -22.61659 -22.05274 -20.49231 -19.53041 -18.89023 -18.53590 -18.18667 -17.69936 -16.99160 -16.53303 -16.36749 -15.73605 -15.37832 -15.17143 -15.02415 -14.79758 -14.69546 -14.55749 -13.85015 -13.76857 -13.61000 -13.40962 -13.27509 -13.19748 -13.15760 -13.04237 -12.95983 -12.91736 -12.80825 -12.76282 -12.60402 -12.57320 -12.30464 -12.20533 -12.12978 -12.09670 -11.89710 -11.82580 -11.64069 -11.40220 -11.14505 -10.52077 -10.46241 -9.67916 -9.18685 -8.11657 -6.24091 -0.33385 1.42090 1.44245 1.53035 1.98472 2.43480 2.59831 3.03053 3.17184 3.45022 3.58773 3.64639 3.95520 4.00873 4.04715 4.09300 4.23697 4.30194 4.40218 4.46938 4.68022 4.69452 4.72447 4.74704 4.82480 4.90384 4.90966 4.97014 4.97640 5.01155 5.04726 5.06405 5.07639 5.14092 5.16430 5.19728 5.27013 5.35509 5.41752 5.50204 5.62443 5.70427 5.88060 5.99381 6.06724 6.18628 6.24587 6.30522 6.82799 7.44596 8.92800 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.003425 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.955215 B = 8172.092330 C = 8860.635507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.277 3.723 3 H 0.022 0.978 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.267 1.267 12 N -0.996 5.996 13 C 0.102 3.898 14 S 2.796 3.204 15 O -1.003 7.003 16 O -1.019 7.019 17 N -1.108 6.108 18 C 0.141 3.859 19 H 0.096 0.904 20 C -0.157 4.157 21 C 0.043 3.957 22 N -0.520 5.520 23 C 0.092 3.908 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.182 4.182 27 C 0.042 3.958 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.420 0.580 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.065 0.935 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 1.360 -21.110 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.172 3.828 3 H 0.040 0.960 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.192 1.192 12 N -0.838 5.838 13 C -0.043 4.043 14 S 2.805 3.195 15 O -0.987 6.987 16 O -1.003 7.003 17 N -0.869 5.869 18 C 0.033 3.967 19 H 0.114 0.886 20 C -0.197 4.197 21 C -0.085 4.085 22 N -0.244 5.244 23 C 0.002 3.998 24 C -0.191 4.191 25 C -0.198 4.198 26 C -0.240 4.240 27 C -0.087 4.087 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.604 0.855 -20.941 21.974 hybrid contribution 0.796 0.784 1.216 1.651 sum -5.808 1.639 -19.725 20.628 Atomic orbital electron populations 1.21861 0.96539 1.00595 0.99880 1.18358 0.92334 0.90987 0.81095 0.95990 1.21662 1.31639 1.13020 0.91623 0.92764 1.25603 0.95208 0.95740 1.01554 1.69973 1.37252 1.23617 1.24312 0.85642 0.77952 0.79214 0.79332 1.20919 1.20336 1.19193 1.57576 1.68863 1.21778 1.35629 1.21371 1.01628 0.80652 1.00667 1.01249 0.73477 0.72524 0.72248 1.93520 1.74470 1.60289 1.70373 1.93559 1.71235 1.63810 1.71696 1.55774 1.58339 1.19153 1.53669 1.21950 0.89329 0.95887 0.89540 0.88571 1.23278 0.98603 1.03383 0.94447 1.22869 0.87877 1.00975 0.96735 1.63877 1.29293 1.28624 1.02655 1.21327 0.94537 0.89717 0.94195 1.21826 1.01150 1.01259 0.94849 1.21884 0.97722 1.00407 0.99738 1.22528 0.99612 1.00046 1.01837 1.23240 0.95201 0.97881 0.92378 0.91905 0.94125 0.94107 0.92664 0.94078 0.90260 0.90269 0.74470 0.90339 0.90688 0.89816 0.90569 0.92245 0.91164 0.92328 0.93173 0.91064 0.92236 0.92016 0.91027 0.92947 0.91664 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.68 71.98 0.62 -5.04 16 2 C 0.28 13.43 2.59 44.24 0.11 13.55 16 3 H 0.02 1.22 7.11 -2.39 -0.02 1.20 16 4 C -0.54 -29.36 8.39 25.60 0.21 -29.15 16 5 H 0.05 2.96 7.69 -2.91 -0.02 2.93 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -51.04 11.39 21.45 0.24 -50.79 16 8 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 N -1.00 -40.40 3.12 -520.46 -1.62 -42.03 16 13 C 0.10 3.51 9.52 127.77 1.22 4.72 16 14 S 2.80 107.40 6.04 -56.49 -0.34 107.06 16 15 O -1.00 -39.76 16.76 -128.00 -2.15 -41.90 16 16 O -1.02 -48.35 16.92 -128.00 -2.17 -50.52 16 17 N -1.11 -31.13 5.71 -163.64 -0.93 -32.07 16 18 C 0.14 3.34 3.57 46.38 0.17 3.50 16 19 H 0.10 2.35 7.08 -2.39 -0.02 2.33 16 20 C -0.16 -3.25 6.64 31.78 0.21 -3.04 16 21 C 0.04 0.73 5.60 86.65 0.49 1.22 16 22 N -0.52 -9.43 5.00 -836.14 -4.18 -13.61 16 23 C 0.09 1.38 0.66 3.53 0.00 1.38 16 24 C -0.13 -1.67 8.39 71.98 0.60 -1.07 16 25 C -0.14 -2.10 8.30 71.98 0.60 -1.51 16 26 C -0.18 -2.55 7.91 71.98 0.57 -1.98 16 27 C 0.04 0.87 4.77 86.77 0.41 1.28 16 28 H 0.06 3.10 6.27 -2.39 -0.01 3.08 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.71 6.90 -2.38 -0.02 1.69 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 2.59 6.49 -2.38 -0.02 2.58 16 34 H 0.08 2.23 6.74 -2.39 -0.02 2.21 16 35 H 0.42 10.40 8.73 -96.75 -0.84 9.55 16 36 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.09 4.77 -2.38 -0.01 1.08 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.70 6.68 -2.39 -0.02 0.68 16 43 H 0.05 0.83 6.87 -2.39 -0.02 0.81 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 0.84 6.26 -2.39 -0.01 0.82 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.05 0.83 6.09 -2.39 -0.01 0.81 16 49 H 0.07 1.26 5.26 -2.39 -0.01 1.25 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -66.85 386.93 -3.36 -70.22 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.09 Total: 22.75 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.67 Total: -14.65 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -6.49 Total: -138.50 kcal Atomic # 8 Polarization: -88.11 SS G_CDS: -4.31 Total: -92.42 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 107.40 SS G_CDS: -0.34 Total: 107.06 kcal Total: -66.85 -3.36 -70.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594799260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.336 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds