Wall clock time and date at job start Tue Mar 31 2020 17:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47004 * 2 1 4 4 C 1.50703 * 109.47231 * 240.00737 * 2 1 3 5 5 H 1.08000 * 119.99161 * 245.88935 * 4 2 1 6 6 C 1.37867 * 120.00155 * 65.61029 * 4 2 1 7 7 N 1.31510 * 120.00347 * 355.20060 * 6 4 2 8 8 Si 1.86802 * 120.00043 * 175.19999 * 6 4 2 9 9 H 1.48502 * 109.47377 * 94.99625 * 8 6 4 10 10 H 1.48500 * 109.47486 * 215.00095 * 8 6 4 11 11 H 1.48506 * 109.46961 * 335.00061 * 8 6 4 12 12 N 1.46493 * 109.47643 * 120.00010 * 2 1 3 13 13 C 1.46502 * 119.99892 * 59.99579 * 12 2 1 14 14 S 1.65601 * 120.00433 * 240.00545 * 12 2 1 15 15 O 1.42096 * 106.40246 * 203.53885 * 14 12 2 16 16 O 1.42098 * 106.40008 * 336.45393 * 14 12 2 17 17 N 1.65602 * 107.21925 * 89.99461 * 14 12 2 18 18 C 1.46499 * 119.99872 * 65.00567 * 17 14 12 19 19 H 1.08996 * 110.29096 * 25.67095 * 18 17 14 20 20 C 1.54262 * 110.31978 * 263.54373 * 18 17 14 21 21 C 1.54386 * 105.06135 * 241.10435 * 20 18 17 22 22 N 1.48564 * 104.59135 * 23.85024 * 21 20 18 23 23 C 1.46898 * 111.00062 * 200.95925 * 22 21 20 24 24 C 1.52998 * 109.47074 * 64.54432 * 23 22 21 25 25 C 1.52998 * 109.47190 * 184.54319 * 23 22 21 26 26 C 1.53004 * 109.47103 * 304.54745 * 23 22 21 27 27 C 1.48555 * 104.22457 * 320.51832 * 22 21 20 28 28 H 1.09002 * 109.47094 * 174.97278 * 1 2 3 29 29 H 1.09003 * 109.47272 * 294.97304 * 1 2 3 30 30 H 1.08997 * 109.47311 * 54.96860 * 1 2 3 31 31 H 0.97009 * 120.00518 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46721 * 90.00368 * 13 12 2 33 33 H 1.08992 * 109.47489 * 210.00298 * 13 12 2 34 34 H 1.09008 * 109.47162 * 330.01106 * 13 12 2 35 35 H 0.97002 * 119.99727 * 245.00087 * 17 14 12 36 36 H 1.09000 * 110.32678 * 0.02562 * 20 18 17 37 37 H 1.09004 * 110.32670 * 122.20771 * 20 18 17 38 38 H 1.08998 * 110.41271 * 142.63105 * 21 20 18 39 39 H 1.09005 * 110.40850 * 265.07787 * 21 20 18 40 40 H 1.09004 * 109.47256 * 65.66213 * 24 23 22 41 41 H 1.09002 * 109.47604 * 185.66726 * 24 23 22 42 42 H 1.09008 * 109.47404 * 305.66338 * 24 23 22 43 43 H 1.09001 * 109.46961 * 60.00428 * 25 23 22 44 44 H 1.08997 * 109.46991 * 180.02562 * 25 23 22 45 45 H 1.08993 * 109.47297 * 300.00244 * 25 23 22 46 46 H 1.08993 * 109.47466 * 59.99417 * 26 23 22 47 47 H 1.08997 * 109.47047 * 179.97438 * 26 23 22 48 48 H 1.09004 * 109.46782 * 299.99438 * 26 23 22 49 49 H 1.08997 * 110.41475 * 280.70672 * 27 22 21 50 50 H 1.08999 * 110.41242 * 158.25946 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5726 -1.6405 -1.1343 6 6 1.7973 -0.1755 -2.4794 7 7 1.0548 0.9028 -2.6039 8 14 2.5335 -0.9826 -3.9947 9 1 1.5399 -1.9092 -4.5943 10 1 2.8966 0.0624 -4.9853 11 1 3.7495 -1.7430 -3.6091 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.7119 -0.8788 2.9813 16 8 3.5794 1.1830 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.1510 -0.0353 4.2817 19 1 1.6242 -1.0085 4.4123 20 6 -0.2701 -0.2035 3.7058 21 6 -1.2093 0.3981 4.7732 22 7 -0.3556 1.3506 5.5289 23 6 -0.9255 1.6318 6.8533 24 6 -0.9268 0.3511 7.6903 25 6 -0.0829 2.6988 7.5550 26 6 -2.3604 2.1384 6.6939 27 6 0.9510 0.6538 5.6486 28 1 -0.3633 -1.0237 -0.0901 29 1 -0.3634 0.4339 0.9316 30 1 -0.3634 0.5899 -0.8415 31 1 0.8898 1.2793 -3.4826 32 1 2.4158 -2.7376 0.9716 33 1 1.6239 -2.2852 2.5001 34 1 0.6904 -2.3002 0.9845 35 1 1.9054 1.7750 3.4681 36 1 -0.3651 0.3417 2.7668 37 1 -0.4952 -1.2594 3.5554 38 1 -2.0373 0.9243 4.2980 39 1 -1.5838 -0.3836 5.4342 40 1 0.1005 0.0456 7.8888 41 1 -1.4402 0.5345 8.6343 42 1 -1.4419 -0.4393 7.1443 43 1 -0.0820 3.6112 6.9587 44 1 -0.5055 2.9071 8.5379 45 1 0.9393 2.3379 7.6685 46 1 -2.9607 1.3783 6.1940 47 1 -2.7834 2.3466 7.6766 48 1 -2.3594 3.0509 6.0976 49 1 0.9146 -0.0879 6.4465 50 1 1.7496 1.3725 5.8325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594799262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:25 Heat of formation + Delta-G solvation = -66.114976 kcal Electronic energy + Delta-G solvation = -29350.917705 eV Core-core repulsion = 25540.185535 eV Total energy + Delta-G solvation = -3810.732170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.08690 -36.68207 -36.32481 -35.95076 -35.17040 -32.68072 -32.52313 -29.51644 -29.12269 -28.24323 -27.64705 -26.72609 -25.55477 -25.10073 -22.44269 -20.82844 -20.63310 -19.04329 -18.78440 -17.34538 -16.84892 -16.57571 -16.12825 -15.98725 -15.18547 -14.91573 -14.37271 -14.35101 -14.26450 -13.84865 -13.53822 -13.38676 -13.16399 -12.84940 -12.45585 -12.37297 -12.30135 -12.19044 -11.96787 -11.84659 -11.76149 -11.65273 -11.47173 -11.43931 -11.33003 -11.21965 -11.11781 -11.01878 -10.90644 -10.80907 -10.74134 -10.65736 -10.40280 -10.25758 -9.98576 -9.32821 -9.14005 -8.50161 -8.46199 -7.91559 -6.05213 -4.10198 1.27537 3.29983 3.37756 3.42369 3.54972 3.76968 4.17671 4.43088 4.44108 4.49091 4.67761 4.81965 4.89172 5.00138 5.11982 5.13803 5.27132 5.27560 5.29726 5.40105 5.41230 5.49364 5.53202 5.58508 5.62898 5.65114 5.71389 5.78226 5.87751 5.90145 5.99719 6.07574 6.14223 6.18972 6.29969 6.39830 6.64996 6.76026 6.81228 6.87046 6.96184 7.04671 7.26227 7.53149 7.65389 7.83528 8.04324 8.30553 8.92229 9.55379 11.01376 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.003434 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.427729 B = 8151.569398 C = 8693.619306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.270 3.730 3 H 0.060 0.940 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.989 5.989 13 C 0.111 3.889 14 S 2.778 3.222 15 O -1.000 7.000 16 O -0.975 6.975 17 N -1.121 6.121 18 C 0.152 3.848 19 H 0.093 0.907 20 C -0.150 4.150 21 C 0.031 3.969 22 N -0.496 5.496 23 C 0.089 3.911 24 C -0.185 4.185 25 C -0.136 4.136 26 C -0.140 4.140 27 C 0.021 3.979 28 H 0.034 0.966 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -0.478 19.787 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.167 3.833 3 H 0.078 0.922 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.036 4.036 14 S 2.787 3.213 15 O -0.983 6.983 16 O -0.959 6.959 17 N -0.879 5.879 18 C 0.043 3.957 19 H 0.111 0.889 20 C -0.189 4.189 21 C -0.097 4.097 22 N -0.220 5.220 23 C 0.000 4.000 24 C -0.244 4.244 25 C -0.193 4.193 26 C -0.197 4.197 27 C -0.108 4.108 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.249 0.751 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.398 0.032 19.371 20.401 hybrid contribution -0.267 -0.836 -0.441 0.982 sum -6.665 -0.804 18.930 20.085 Atomic orbital electron populations 1.22136 0.98372 1.00179 0.99556 1.18711 0.91098 0.93064 0.80465 0.92193 1.21330 1.35829 1.08571 0.90271 0.91985 1.24901 0.94922 0.95066 0.98949 1.69890 1.37387 1.21587 1.23870 0.86521 0.79558 0.78998 0.82548 1.20825 1.21099 1.19818 1.57672 1.69967 1.19646 1.35854 1.21140 1.01621 0.82358 0.98492 1.01955 0.73676 0.73182 0.72467 1.93529 1.69229 1.60902 1.74648 1.93613 1.74425 1.55958 1.71896 1.56246 1.61617 1.17455 1.52581 1.21373 0.91363 0.93588 0.89353 0.88880 1.23081 0.93957 1.01670 1.00232 1.23164 0.96787 0.94320 0.95386 1.65663 1.02386 1.39478 1.14464 1.21213 0.95344 0.94788 0.88701 1.22544 1.02288 0.98795 1.00736 1.21805 0.99321 0.98706 0.99504 1.21879 0.94318 1.01819 1.01691 1.23528 0.93280 0.97761 0.96210 0.94724 0.96623 0.89793 0.92771 0.93391 0.93618 0.91038 0.75126 0.88639 0.90706 0.89985 0.93450 0.91934 0.92082 0.92081 0.91701 0.92509 0.92676 0.92519 0.92428 0.91684 0.92006 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.83 37.16 0.33 -2.78 16 2 C 0.27 6.46 2.56 -69.09 -0.18 6.28 16 3 H 0.06 1.62 6.91 -51.92 -0.36 1.26 16 4 C -0.52 -13.94 8.34 -34.44 -0.29 -14.23 16 5 H 0.06 1.66 7.50 -52.49 -0.39 1.26 16 6 C 0.06 1.74 5.36 -17.83 -0.10 1.65 16 7 N -0.89 -24.79 11.61 55.43 0.64 -24.15 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.99 -19.92 3.12 -115.85 -0.36 -20.28 16 13 C 0.11 1.90 9.47 59.85 0.57 2.46 16 14 S 2.78 54.00 6.08 -107.50 -0.65 53.34 16 15 O -1.00 -20.61 16.58 -57.18 -0.95 -21.56 16 16 O -0.97 -22.93 16.70 -57.18 -0.95 -23.88 16 17 N -1.12 -16.47 5.46 -3.71 -0.02 -16.49 16 18 C 0.15 1.87 3.74 -66.55 -0.25 1.62 16 19 H 0.09 1.14 7.19 -51.93 -0.37 0.77 16 20 C -0.15 -1.74 6.79 -25.34 -0.17 -1.91 16 21 C 0.03 0.31 5.01 -2.18 -0.01 0.30 16 22 N -0.50 -5.04 5.19 -214.37 -1.11 -6.15 16 23 C 0.09 0.76 0.71 -131.60 -0.09 0.66 16 24 C -0.19 -1.39 7.58 37.16 0.28 -1.11 16 25 C -0.14 -1.09 8.52 37.16 0.32 -0.77 16 26 C -0.14 -1.10 8.21 37.16 0.31 -0.79 16 27 C 0.02 0.22 5.12 -2.18 -0.01 0.21 16 28 H 0.03 0.71 6.88 -51.93 -0.36 0.36 16 29 H 0.01 0.29 6.02 -51.93 -0.31 -0.03 16 30 H 0.08 2.06 6.47 -51.93 -0.34 1.72 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.05 0.65 7.41 -51.93 -0.38 0.26 16 34 H 0.07 1.17 6.53 -51.92 -0.34 0.83 16 35 H 0.42 5.69 8.84 -34.47 -0.30 5.39 16 36 H 0.10 1.31 5.83 -51.93 -0.30 1.01 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.84 7.67 -51.93 -0.40 0.44 16 39 H 0.05 0.42 5.83 -51.93 -0.30 0.12 16 40 H 0.06 0.48 6.26 -51.93 -0.32 0.15 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.47 6.02 -51.92 -0.31 0.16 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.45 7.22 -51.93 -0.38 0.07 16 46 H 0.06 0.44 6.85 -51.93 -0.36 0.09 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.57 5.40 -51.93 -0.28 0.29 16 50 H 0.09 0.93 7.67 -51.93 -0.40 0.54 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -31.60 383.60 -10.25 -41.85 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.30 Total: 3.71 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 0.70 Total: -8.41 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -0.85 Total: -67.08 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.90 Total: -45.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 54.00 SS G_CDS: -0.65 Total: 53.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.60 -10.25 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594799262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.268 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds