Wall clock time and date at job start Tue Mar 31 2020 17:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47004 * 2 1 4 4 C 1.50703 * 109.47231 * 240.00737 * 2 1 3 5 5 H 1.08000 * 119.99161 * 245.88935 * 4 2 1 6 6 C 1.37867 * 120.00155 * 65.61029 * 4 2 1 7 7 N 1.31510 * 120.00347 * 355.20060 * 6 4 2 8 8 Si 1.86802 * 120.00043 * 175.19999 * 6 4 2 9 9 H 1.48502 * 109.47377 * 94.99625 * 8 6 4 10 10 H 1.48500 * 109.47486 * 215.00095 * 8 6 4 11 11 H 1.48506 * 109.46961 * 335.00061 * 8 6 4 12 12 N 1.46493 * 109.47643 * 120.00010 * 2 1 3 13 13 C 1.46502 * 119.99892 * 59.99579 * 12 2 1 14 14 S 1.65601 * 120.00433 * 240.00545 * 12 2 1 15 15 O 1.42096 * 106.40246 * 203.53885 * 14 12 2 16 16 O 1.42098 * 106.40008 * 336.45393 * 14 12 2 17 17 N 1.65602 * 107.21925 * 89.99461 * 14 12 2 18 18 C 1.46499 * 119.99872 * 65.00567 * 17 14 12 19 19 H 1.08996 * 110.29096 * 25.67095 * 18 17 14 20 20 C 1.54262 * 110.31978 * 263.54373 * 18 17 14 21 21 C 1.54386 * 105.06135 * 241.10435 * 20 18 17 22 22 N 1.48564 * 104.59135 * 23.85024 * 21 20 18 23 23 C 1.46898 * 111.00062 * 200.95925 * 22 21 20 24 24 C 1.52998 * 109.47074 * 64.54432 * 23 22 21 25 25 C 1.52998 * 109.47190 * 184.54319 * 23 22 21 26 26 C 1.53004 * 109.47103 * 304.54745 * 23 22 21 27 27 C 1.48555 * 104.22457 * 320.51832 * 22 21 20 28 28 H 1.09002 * 109.47094 * 174.97278 * 1 2 3 29 29 H 1.09003 * 109.47272 * 294.97304 * 1 2 3 30 30 H 1.08997 * 109.47311 * 54.96860 * 1 2 3 31 31 H 0.97009 * 120.00518 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46721 * 90.00368 * 13 12 2 33 33 H 1.08992 * 109.47489 * 210.00298 * 13 12 2 34 34 H 1.09008 * 109.47162 * 330.01106 * 13 12 2 35 35 H 0.97002 * 119.99727 * 245.00087 * 17 14 12 36 36 H 1.09000 * 110.32678 * 0.02562 * 20 18 17 37 37 H 1.09004 * 110.32670 * 122.20771 * 20 18 17 38 38 H 1.08998 * 110.41271 * 142.63105 * 21 20 18 39 39 H 1.09005 * 110.40850 * 265.07787 * 21 20 18 40 40 H 1.09004 * 109.47256 * 65.66213 * 24 23 22 41 41 H 1.09002 * 109.47604 * 185.66726 * 24 23 22 42 42 H 1.09008 * 109.47404 * 305.66338 * 24 23 22 43 43 H 1.09001 * 109.46961 * 60.00428 * 25 23 22 44 44 H 1.08997 * 109.46991 * 180.02562 * 25 23 22 45 45 H 1.08993 * 109.47297 * 300.00244 * 25 23 22 46 46 H 1.08993 * 109.47466 * 59.99417 * 26 23 22 47 47 H 1.08997 * 109.47047 * 179.97438 * 26 23 22 48 48 H 1.09004 * 109.46782 * 299.99438 * 26 23 22 49 49 H 1.08997 * 110.41475 * 280.70672 * 27 22 21 50 50 H 1.08999 * 110.41242 * 158.25946 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5726 -1.6405 -1.1343 6 6 1.7973 -0.1755 -2.4794 7 7 1.0548 0.9028 -2.6039 8 14 2.5335 -0.9826 -3.9947 9 1 1.5399 -1.9092 -4.5943 10 1 2.8966 0.0624 -4.9853 11 1 3.7495 -1.7430 -3.6091 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.7119 -0.8788 2.9813 16 8 3.5794 1.1830 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.1510 -0.0353 4.2817 19 1 1.6242 -1.0085 4.4123 20 6 -0.2701 -0.2035 3.7058 21 6 -1.2093 0.3981 4.7732 22 7 -0.3556 1.3506 5.5289 23 6 -0.9255 1.6318 6.8533 24 6 -0.9268 0.3511 7.6903 25 6 -0.0829 2.6988 7.5550 26 6 -2.3604 2.1384 6.6939 27 6 0.9510 0.6538 5.6486 28 1 -0.3633 -1.0237 -0.0901 29 1 -0.3634 0.4339 0.9316 30 1 -0.3634 0.5899 -0.8415 31 1 0.8898 1.2793 -3.4826 32 1 2.4158 -2.7376 0.9716 33 1 1.6239 -2.2852 2.5001 34 1 0.6904 -2.3002 0.9845 35 1 1.9054 1.7750 3.4681 36 1 -0.3651 0.3417 2.7668 37 1 -0.4952 -1.2594 3.5554 38 1 -2.0373 0.9243 4.2980 39 1 -1.5838 -0.3836 5.4342 40 1 0.1005 0.0456 7.8888 41 1 -1.4402 0.5345 8.6343 42 1 -1.4419 -0.4393 7.1443 43 1 -0.0820 3.6112 6.9587 44 1 -0.5055 2.9071 8.5379 45 1 0.9393 2.3379 7.6685 46 1 -2.9607 1.3783 6.1940 47 1 -2.7834 2.3466 7.6766 48 1 -2.3594 3.0509 6.0976 49 1 0.9146 -0.0879 6.4465 50 1 1.7496 1.3725 5.8325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594799262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:25 Heat of formation + Delta-G solvation = -90.004830 kcal Electronic energy + Delta-G solvation = -29351.953647 eV Core-core repulsion = 25540.185535 eV Total energy + Delta-G solvation = -3811.768112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86957 -38.30558 -37.89069 -37.05797 -36.85788 -34.47926 -33.66986 -30.92328 -30.30130 -29.10419 -28.22966 -27.47535 -27.22532 -26.94396 -23.26575 -22.54184 -21.66443 -20.37520 -19.62700 -18.85255 -18.55018 -18.13766 -17.38617 -17.04206 -16.81837 -16.17085 -15.72173 -15.17684 -15.04355 -14.99920 -14.81792 -14.62074 -14.52452 -14.33784 -13.72048 -13.40098 -13.31613 -13.28068 -13.22226 -13.12996 -13.01048 -12.97860 -12.91519 -12.79653 -12.64826 -12.56033 -12.39605 -12.26230 -12.18266 -12.09803 -11.92204 -11.86692 -11.75209 -11.62668 -11.40078 -11.06477 -10.51778 -10.45180 -9.60783 -9.23169 -8.10748 -6.22317 -0.27529 1.41228 1.44480 1.53942 2.08073 2.44482 2.68537 3.04216 3.18962 3.45230 3.59593 3.74572 4.02544 4.05109 4.09623 4.18372 4.31375 4.37072 4.38400 4.50289 4.66390 4.72360 4.73906 4.79726 4.86014 4.91445 4.92426 4.95287 4.99268 5.02226 5.06329 5.08084 5.09995 5.17298 5.22666 5.23193 5.29120 5.38386 5.46747 5.53539 5.64063 5.74856 5.91818 6.00393 6.09709 6.24823 6.25342 6.33032 6.85933 7.46223 8.94225 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.003434 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.427729 B = 8151.569398 C = 8693.619306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.276 3.724 3 H 0.023 0.977 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.993 5.993 13 C 0.104 3.896 14 S 2.795 3.205 15 O -1.011 7.011 16 O -1.022 7.022 17 N -1.106 6.106 18 C 0.143 3.857 19 H 0.098 0.902 20 C -0.149 4.149 21 C 0.036 3.964 22 N -0.509 5.509 23 C 0.086 3.914 24 C -0.181 4.181 25 C -0.134 4.134 26 C -0.137 4.137 27 C 0.027 3.973 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.421 0.579 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.080 0.920 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 -1.694 21.564 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.172 3.828 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.835 5.835 13 C -0.041 4.041 14 S 2.804 3.196 15 O -0.994 6.994 16 O -1.006 7.006 17 N -0.868 5.868 18 C 0.035 3.965 19 H 0.116 0.884 20 C -0.189 4.189 21 C -0.091 4.091 22 N -0.234 5.234 23 C -0.003 4.003 24 C -0.240 4.240 25 C -0.192 4.192 26 C -0.195 4.195 27 C -0.103 4.103 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.454 -1.203 21.159 22.466 hybrid contribution 0.051 -0.440 -0.882 0.987 sum -7.403 -1.643 20.277 21.648 Atomic orbital electron populations 1.21895 0.96616 1.00373 0.99765 1.18355 0.92252 0.91174 0.81044 0.95921 1.21674 1.35758 1.08595 0.91703 0.92493 1.25620 0.95367 0.95705 1.01577 1.70005 1.38242 1.22594 1.24377 0.85643 0.78898 0.78225 0.79450 1.19570 1.21090 1.19956 1.57511 1.69866 1.20937 1.35186 1.21351 1.01696 0.80396 1.00705 1.01231 0.73669 0.72317 0.72383 1.93507 1.69927 1.61310 1.74670 1.93546 1.76081 1.57527 1.73423 1.55835 1.61375 1.17922 1.51670 1.21678 0.91328 0.93542 0.89917 0.88410 1.23045 0.93793 1.02397 0.99621 1.23121 0.96240 0.94629 0.95143 1.65655 1.02400 1.39637 1.15709 1.21299 0.95508 0.95466 0.88051 1.22496 1.02445 0.98015 1.00995 1.21796 0.99317 0.98084 0.99984 1.21860 0.94077 1.01240 1.02276 1.23486 0.93474 0.98027 0.95276 0.93812 0.93865 0.92695 0.92768 0.94335 0.90331 0.90138 0.74393 0.90868 0.89242 0.90292 0.91793 0.91929 0.91017 0.92009 0.92855 0.91144 0.92881 0.92435 0.91098 0.92868 0.90228 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.83 71.98 0.64 -4.87 16 2 C 0.28 13.42 2.56 44.25 0.11 13.53 16 3 H 0.02 1.28 6.91 -2.38 -0.02 1.27 16 4 C -0.54 -29.13 8.34 25.60 0.21 -28.92 16 5 H 0.06 3.06 7.50 -2.91 -0.02 3.04 16 6 C 0.02 0.95 5.36 84.65 0.45 1.40 16 7 N -0.91 -51.79 11.61 21.44 0.25 -51.54 16 8 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.99 -39.75 3.12 -520.44 -1.62 -41.37 16 13 C 0.10 3.42 9.47 127.77 1.21 4.63 16 14 S 2.79 108.51 6.08 -56.49 -0.34 108.16 16 15 O -1.01 -40.83 16.58 -128.00 -2.12 -42.95 16 16 O -1.02 -49.40 16.70 -128.00 -2.14 -51.54 16 17 N -1.11 -31.66 5.46 -165.67 -0.90 -32.57 16 18 C 0.14 3.23 3.74 45.89 0.17 3.40 16 19 H 0.10 2.14 7.19 -2.39 -0.02 2.12 16 20 C -0.15 -3.13 6.79 31.49 0.21 -2.92 16 21 C 0.04 0.64 5.01 86.45 0.43 1.07 16 22 N -0.51 -9.33 5.19 -832.15 -4.32 -13.64 16 23 C 0.09 1.26 0.71 3.53 0.00 1.26 16 24 C -0.18 -2.17 7.58 71.98 0.55 -1.62 16 25 C -0.13 -1.91 8.52 71.98 0.61 -1.29 16 26 C -0.14 -1.87 8.21 71.98 0.59 -1.28 16 27 C 0.03 0.49 5.12 86.45 0.44 0.94 16 28 H 0.04 1.77 6.88 -2.39 -0.02 1.76 16 29 H 0.04 1.59 6.02 -2.39 -0.01 1.58 16 30 H 0.05 2.72 6.47 -2.39 -0.02 2.70 16 31 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 32 H 0.04 1.33 8.09 -2.38 -0.02 1.31 16 33 H 0.08 2.04 7.41 -2.39 -0.02 2.02 16 34 H 0.08 2.49 6.53 -2.38 -0.02 2.47 16 35 H 0.42 11.39 8.84 -96.74 -0.86 10.54 16 36 H 0.07 1.90 5.83 -2.39 -0.01 1.88 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.46 7.67 -2.39 -0.02 1.44 16 39 H 0.06 0.93 5.83 -2.38 -0.01 0.91 16 40 H 0.06 0.75 6.26 -2.38 -0.01 0.74 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.74 6.02 -2.38 -0.01 0.72 16 43 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.77 7.22 -2.39 -0.02 0.75 16 46 H 0.06 0.77 6.85 -2.39 -0.02 0.75 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.08 1.22 5.40 -2.39 -0.01 1.21 16 50 H 0.09 1.66 7.67 -2.39 -0.02 1.64 16 Total: -1.00 -68.38 383.60 -3.45 -71.82 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.08 Total: 22.47 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.64 Total: -14.67 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -6.60 Total: -139.12 kcal Atomic # 8 Polarization: -90.23 SS G_CDS: -4.26 Total: -94.49 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 108.51 SS G_CDS: -0.34 Total: 108.16 kcal Total: -68.38 -3.45 -71.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594799262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.180 kcal (2) G-P(sol) polarization free energy of solvation -68.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds