Wall clock time and date at job start Tue Mar 31 2020 17:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99694 * 2 1 4 4 H 1.48490 * 109.47418 * 270.00071 * 3 2 1 5 5 H 1.48501 * 109.47056 * 30.00272 * 3 2 1 6 6 H 1.48503 * 109.46657 * 150.00075 * 3 2 1 7 7 C 1.38811 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00104 * 197.34965 * 7 2 1 9 9 N 1.36938 * 119.99560 * 17.35228 * 7 2 1 10 10 C 1.46934 * 120.62762 * 207.67666 * 9 7 2 11 11 C 1.53194 * 108.77406 * 233.63051 * 10 9 7 12 12 C 1.53034 * 109.31103 * 305.36581 * 11 10 9 13 13 C 1.53004 * 109.45706 * 181.38717 * 12 11 10 14 14 N 1.46497 * 109.47091 * 174.97196 * 13 12 11 15 15 C 1.34780 * 120.00352 * 180.02562 * 14 13 12 16 16 O 1.21282 * 119.99366 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00229 * 180.27517 * 15 14 13 18 18 H 1.08996 * 109.69330 * 299.17270 * 17 15 14 19 19 C 1.53444 * 109.69154 * 178.59176 * 17 15 14 20 20 C 1.53100 * 109.55678 * 190.56972 * 19 17 15 21 21 C 1.53426 * 109.58330 * 70.05084 * 20 19 17 22 22 C 1.50602 * 108.33223 * 310.17074 * 21 20 19 23 23 N 1.32908 * 129.16251 * 196.56030 * 22 21 20 24 24 N 1.29016 * 108.63384 * 179.89349 * 23 22 21 25 25 N 1.29108 * 110.26114 * 0.02562 * 24 23 22 26 26 H 0.97004 * 126.00885 * 180.02562 * 25 24 23 27 27 C 1.34392 * 107.98539 * 0.06293 * 25 24 23 28 28 C 1.53037 * 109.52912 * 61.37494 * 12 11 10 29 29 C 1.46923 * 120.63550 * 27.69852 * 9 7 2 30 30 H 0.96994 * 119.99899 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58218 * 113.84280 * 10 9 7 32 32 H 1.08996 * 109.58187 * 353.41915 * 10 9 7 33 33 H 1.08994 * 109.49464 * 185.41290 * 11 10 9 34 34 H 1.08998 * 109.51882 * 65.33436 * 11 10 9 35 35 H 1.09005 * 109.46218 * 301.35582 * 12 11 10 36 36 H 1.09004 * 109.47022 * 54.97024 * 13 12 11 37 37 H 1.09004 * 109.47230 * 294.97078 * 13 12 11 38 38 H 0.97006 * 120.00514 * 0.02562 * 14 13 12 39 39 H 1.09000 * 109.45828 * 310.59418 * 19 17 15 40 40 H 1.09000 * 109.45589 * 70.54153 * 19 17 15 41 41 H 1.09006 * 109.45385 * 310.01689 * 20 19 17 42 42 H 1.08998 * 109.43678 * 190.07636 * 20 19 17 43 43 H 1.08998 * 109.68862 * 190.46479 * 21 20 19 44 44 H 1.08995 * 109.72421 * 69.90209 * 21 20 19 45 45 H 1.08992 * 109.49975 * 58.57511 * 28 12 11 46 46 H 1.09005 * 109.49885 * 178.67464 * 28 12 11 47 47 H 1.08993 * 109.58633 * 246.15746 * 29 9 7 48 48 H 1.09001 * 109.58187 * 6.58384 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0535 -1.2235 0.2784 9 7 1.3724 -2.3609 -0.3548 10 6 1.8196 -3.6548 0.1788 11 6 2.0752 -4.6091 -0.9920 12 6 0.8198 -4.6886 -1.8635 13 6 1.0596 -5.6675 -3.0147 14 7 -0.1789 -5.8354 -3.7790 15 6 -0.2059 -6.6578 -4.8464 16 8 0.7954 -7.2585 -5.1745 17 6 -1.4782 -6.8258 -5.6363 18 1 -2.2602 -7.2275 -4.9920 19 6 -1.2345 -7.7811 -6.8121 20 6 -2.4378 -7.7468 -7.7581 21 6 -2.4832 -6.3957 -8.4835 22 6 -2.3564 -5.3019 -7.4561 23 7 -2.6363 -4.0076 -7.5691 24 7 -2.3827 -3.4311 -6.4431 25 7 -1.9449 -4.2935 -5.5879 26 1 -1.6857 -4.1073 -4.6718 27 6 -1.9107 -5.4945 -6.1900 28 6 0.5020 -3.3030 -2.4304 29 6 0.2281 -2.3340 -1.2759 30 1 -0.4850 0.8400 0.0004 31 1 1.0471 -4.0696 0.8264 32 1 2.7401 -3.5176 0.7461 33 1 2.3146 -5.6005 -0.6076 34 1 2.9092 -4.2389 -1.5882 35 1 -0.0195 -5.0356 -1.2607 36 1 1.3722 -6.6314 -2.6128 37 1 1.8395 -5.2761 -3.6680 38 1 -0.9796 -5.3547 -3.5168 39 1 -0.3395 -7.4718 -7.3518 40 1 -1.0984 -8.7945 -6.4343 41 1 -3.3547 -7.8818 -7.1843 42 1 -2.3465 -8.5491 -8.4903 43 1 -3.4309 -6.2946 -9.0125 44 1 -1.6581 -6.3309 -9.1927 45 1 1.3507 -2.9447 -3.0127 46 1 -0.3786 -3.3648 -3.0699 47 1 -0.6740 -2.6411 -0.7469 48 1 0.0986 -1.3254 -1.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597292636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:54 Heat of formation + Delta-G solvation = 60.454096 kcal Electronic energy + Delta-G solvation = -29452.526813 eV Core-core repulsion = 25544.131890 eV Total energy + Delta-G solvation = -3908.394924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.78825 -40.25038 -38.15547 -37.05570 -35.24330 -34.22448 -32.99263 -31.19675 -30.50742 -30.41489 -29.99443 -27.14885 -25.10500 -24.08076 -23.34217 -22.84232 -22.43289 -21.22306 -21.07238 -19.90789 -19.32205 -18.45625 -17.47963 -16.86807 -16.51869 -16.07794 -15.84232 -15.06492 -14.92229 -14.40601 -14.29435 -14.23082 -14.05175 -13.82959 -13.64989 -13.54164 -13.14390 -12.63001 -12.54558 -12.48054 -11.98863 -11.89169 -11.69325 -11.64193 -11.54080 -11.42133 -11.07234 -10.98751 -10.79224 -10.66275 -10.63755 -10.40437 -10.35421 -10.18316 -9.99222 -9.71963 -9.58666 -9.31102 -9.17098 -8.54170 -6.76700 -5.86349 -3.28631 1.20995 2.13683 2.27895 2.43133 2.83545 3.34311 3.41832 3.42323 3.89058 3.98381 4.23647 4.34461 4.44142 4.50317 4.76229 4.83168 4.91382 4.93379 5.04347 5.05949 5.16300 5.22986 5.33096 5.45357 5.49009 5.54643 5.63961 5.66954 5.68490 5.73752 5.85849 5.90825 5.93537 5.97388 6.08508 6.13732 6.35097 6.35268 6.49781 6.52129 6.59143 6.69036 6.86728 7.08741 7.23090 7.52470 7.73242 7.81971 8.19313 8.37335 9.13817 9.77046 10.32796 11.22283 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.002943 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.700121 B = 9511.220556 C =10835.110650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.146 3.854 11 C -0.124 4.124 12 C -0.093 4.093 13 C 0.121 3.879 14 N -0.729 5.729 15 C 0.514 3.486 16 O -0.523 6.523 17 C -0.032 4.032 18 H 0.120 0.880 19 C -0.097 4.097 20 C -0.119 4.119 21 C -0.036 4.036 22 C -0.004 4.004 23 N -0.258 5.258 24 N -0.071 5.071 25 N -0.377 5.377 26 H 0.445 0.555 27 C -0.019 4.019 28 C -0.133 4.133 29 C 0.170 3.830 30 H 0.254 0.746 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.391 0.609 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.032 0.968 47 H 0.017 0.983 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 -17.986 -12.187 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.019 3.981 11 C -0.164 4.164 12 C -0.112 4.112 13 C -0.001 4.001 14 N -0.382 5.382 15 C 0.299 3.701 16 O -0.398 6.398 17 C -0.055 4.055 18 H 0.137 0.863 19 C -0.135 4.135 20 C -0.157 4.157 21 C -0.075 4.075 22 C -0.144 4.144 23 N -0.124 5.124 24 N -0.050 5.050 25 N -0.099 5.099 26 H 0.293 0.707 27 C -0.154 4.154 28 C -0.172 4.172 29 C 0.044 3.956 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.225 0.775 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.036 0.964 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.694 -16.750 -12.761 21.814 hybrid contribution 0.407 0.370 1.151 1.275 sum -5.287 -16.381 -11.610 20.763 Atomic orbital electron populations 1.70017 1.05262 1.25615 1.53817 1.25036 0.95305 0.98466 1.00776 0.86289 0.79138 0.83589 0.77764 1.21392 1.21713 1.20406 1.19199 0.92766 0.84857 1.41565 0.91606 1.44033 1.35813 1.01458 1.50104 1.20893 0.97746 0.86824 0.92626 1.21980 0.96346 0.99424 0.98626 1.21357 0.99771 0.95045 0.95028 1.21676 0.85344 0.99868 0.93257 1.46268 1.14762 1.46521 1.30605 1.20394 0.89905 0.79321 0.80519 1.90731 1.34956 1.46227 1.67881 1.20066 0.96251 0.90626 0.98570 0.86283 1.21475 0.99503 0.98556 0.94009 1.21680 0.98453 0.96760 0.98832 1.20032 1.03720 0.89182 0.94569 1.21728 1.04465 0.93740 0.94470 1.74887 1.17412 1.05683 1.14434 1.78687 1.15498 1.16246 0.94555 1.44954 1.43941 1.05866 1.15090 0.70719 1.21438 1.09415 0.89046 0.95524 1.22271 0.99395 0.95625 0.99936 1.20771 0.88748 0.98321 0.87734 0.93573 0.96456 0.92587 0.92775 0.91958 0.91127 0.91335 0.91252 0.77501 0.89901 0.89663 0.91129 0.89887 0.89417 0.89561 0.92156 0.94938 0.96443 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.19 55.49 0.62 -24.92 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.05 2.99 -172.32 -0.52 -14.57 16 10 C 0.15 2.84 6.52 -3.71 -0.02 2.81 16 11 C -0.12 -1.92 5.36 -26.61 -0.14 -2.06 16 12 C -0.09 -1.31 2.19 -90.58 -0.20 -1.50 16 13 C 0.12 1.49 5.06 -4.04 -0.02 1.47 16 14 N -0.73 -7.62 4.83 -60.29 -0.29 -7.92 16 15 C 0.51 5.71 7.15 -10.99 -0.08 5.63 16 16 O -0.52 -7.58 15.84 5.56 0.09 -7.50 16 17 C -0.03 -0.26 2.91 -92.78 -0.27 -0.53 16 18 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 19 C -0.10 -0.70 4.66 -26.45 -0.12 -0.82 16 20 C -0.12 -0.64 5.90 -26.46 -0.16 -0.80 16 21 C -0.04 -0.26 6.30 -27.71 -0.17 -0.44 16 22 C 0.00 -0.04 7.11 -83.12 -0.59 -0.64 16 23 N -0.26 -3.64 12.40 33.17 0.41 -3.23 16 24 N -0.07 -1.01 13.40 60.35 0.81 -0.20 16 25 N -0.38 -4.27 6.75 33.39 0.23 -4.04 16 26 H 0.45 4.29 6.04 -190.07 -1.15 3.14 16 27 C -0.02 -0.19 6.38 -82.50 -0.53 -0.72 16 28 C -0.13 -2.20 5.25 -26.61 -0.14 -2.34 16 29 C 0.17 3.75 5.31 -3.71 -0.02 3.73 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.39 3.40 5.68 -40.82 -0.23 3.16 16 39 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.03 0.44 6.39 -51.93 -0.33 0.11 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -32.76 372.87 -9.06 -41.82 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.31 Total: 1.64 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.69 Total: -3.14 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 1.26 Total: -54.87 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.76 -9.06 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597292636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.275 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds