Wall clock time and date at job start Tue Mar 31 2020 17:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99694 * 2 1 4 4 H 1.48490 * 109.47418 * 270.00071 * 3 2 1 5 5 H 1.48501 * 109.47056 * 30.00272 * 3 2 1 6 6 H 1.48503 * 109.46657 * 150.00075 * 3 2 1 7 7 C 1.38811 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00104 * 197.34965 * 7 2 1 9 9 N 1.36938 * 119.99560 * 17.35228 * 7 2 1 10 10 C 1.46934 * 120.62762 * 207.67666 * 9 7 2 11 11 C 1.53194 * 108.77406 * 233.63051 * 10 9 7 12 12 C 1.53034 * 109.31103 * 305.36581 * 11 10 9 13 13 C 1.53004 * 109.45706 * 181.38717 * 12 11 10 14 14 N 1.46497 * 109.47091 * 174.97196 * 13 12 11 15 15 C 1.34780 * 120.00352 * 180.02562 * 14 13 12 16 16 O 1.21282 * 119.99366 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00229 * 180.27517 * 15 14 13 18 18 H 1.08996 * 109.69330 * 299.17270 * 17 15 14 19 19 C 1.53444 * 109.69154 * 178.59176 * 17 15 14 20 20 C 1.53100 * 109.55678 * 190.56972 * 19 17 15 21 21 C 1.53426 * 109.58330 * 70.05084 * 20 19 17 22 22 C 1.50602 * 108.33223 * 310.17074 * 21 20 19 23 23 N 1.32908 * 129.16251 * 196.56030 * 22 21 20 24 24 N 1.29016 * 108.63384 * 179.89349 * 23 22 21 25 25 N 1.29108 * 110.26114 * 0.02562 * 24 23 22 26 26 H 0.97004 * 126.00885 * 180.02562 * 25 24 23 27 27 C 1.34392 * 107.98539 * 0.06293 * 25 24 23 28 28 C 1.53037 * 109.52912 * 61.37494 * 12 11 10 29 29 C 1.46923 * 120.63550 * 27.69852 * 9 7 2 30 30 H 0.96994 * 119.99899 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58218 * 113.84280 * 10 9 7 32 32 H 1.08996 * 109.58187 * 353.41915 * 10 9 7 33 33 H 1.08994 * 109.49464 * 185.41290 * 11 10 9 34 34 H 1.08998 * 109.51882 * 65.33436 * 11 10 9 35 35 H 1.09005 * 109.46218 * 301.35582 * 12 11 10 36 36 H 1.09004 * 109.47022 * 54.97024 * 13 12 11 37 37 H 1.09004 * 109.47230 * 294.97078 * 13 12 11 38 38 H 0.97006 * 120.00514 * 0.02562 * 14 13 12 39 39 H 1.09000 * 109.45828 * 310.59418 * 19 17 15 40 40 H 1.09000 * 109.45589 * 70.54153 * 19 17 15 41 41 H 1.09006 * 109.45385 * 310.01689 * 20 19 17 42 42 H 1.08998 * 109.43678 * 190.07636 * 20 19 17 43 43 H 1.08998 * 109.68862 * 190.46479 * 21 20 19 44 44 H 1.08995 * 109.72421 * 69.90209 * 21 20 19 45 45 H 1.08992 * 109.49975 * 58.57511 * 28 12 11 46 46 H 1.09005 * 109.49885 * 178.67464 * 28 12 11 47 47 H 1.08993 * 109.58633 * 246.15746 * 29 9 7 48 48 H 1.09001 * 109.58187 * 6.58384 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0535 -1.2235 0.2784 9 7 1.3724 -2.3609 -0.3548 10 6 1.8196 -3.6548 0.1788 11 6 2.0752 -4.6091 -0.9920 12 6 0.8198 -4.6886 -1.8635 13 6 1.0596 -5.6675 -3.0147 14 7 -0.1789 -5.8354 -3.7790 15 6 -0.2059 -6.6578 -4.8464 16 8 0.7954 -7.2585 -5.1745 17 6 -1.4782 -6.8258 -5.6363 18 1 -2.2602 -7.2275 -4.9920 19 6 -1.2345 -7.7811 -6.8121 20 6 -2.4378 -7.7468 -7.7581 21 6 -2.4832 -6.3957 -8.4835 22 6 -2.3564 -5.3019 -7.4561 23 7 -2.6363 -4.0076 -7.5691 24 7 -2.3827 -3.4311 -6.4431 25 7 -1.9449 -4.2935 -5.5879 26 1 -1.6857 -4.1073 -4.6718 27 6 -1.9107 -5.4945 -6.1900 28 6 0.5020 -3.3030 -2.4304 29 6 0.2281 -2.3340 -1.2759 30 1 -0.4850 0.8400 0.0004 31 1 1.0471 -4.0696 0.8264 32 1 2.7401 -3.5176 0.7461 33 1 2.3146 -5.6005 -0.6076 34 1 2.9092 -4.2389 -1.5882 35 1 -0.0195 -5.0356 -1.2607 36 1 1.3722 -6.6314 -2.6128 37 1 1.8395 -5.2761 -3.6680 38 1 -0.9796 -5.3547 -3.5168 39 1 -0.3395 -7.4718 -7.3518 40 1 -1.0984 -8.7945 -6.4343 41 1 -3.3547 -7.8818 -7.1843 42 1 -2.3465 -8.5491 -8.4903 43 1 -3.4309 -6.2946 -9.0125 44 1 -1.6581 -6.3309 -9.1927 45 1 1.3507 -2.9447 -3.0127 46 1 -0.3786 -3.3648 -3.0699 47 1 -0.6740 -2.6411 -0.7469 48 1 0.0986 -1.3254 -1.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597292636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:53 Heat of formation + Delta-G solvation = 38.248412 kcal Electronic energy + Delta-G solvation = -29453.489724 eV Core-core repulsion = 25544.131890 eV Total energy + Delta-G solvation = -3909.357834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.66517 -41.16743 -39.50669 -37.79608 -36.50503 -35.22471 -34.45785 -32.56441 -31.58917 -31.48914 -31.18287 -28.54000 -26.26474 -25.32484 -24.26370 -23.93604 -23.61988 -22.62003 -22.00891 -20.80003 -20.54207 -19.35310 -18.74222 -18.25204 -17.43633 -17.02448 -16.84297 -16.73641 -15.92289 -15.68213 -15.35481 -15.19933 -15.02603 -14.94795 -14.87297 -14.63814 -14.39081 -14.06300 -13.88035 -13.43020 -13.19468 -13.12322 -12.86247 -12.69912 -12.61832 -12.46131 -12.32520 -12.25458 -12.03008 -12.00053 -11.90165 -11.68255 -11.64882 -11.40081 -11.34681 -11.19549 -10.99312 -10.56785 -10.26927 -10.00361 -8.70437 -7.90963 -5.34751 0.34805 1.26576 1.41283 1.42899 1.45389 1.52903 1.60389 1.98865 2.48015 3.14063 3.23619 3.27407 3.51270 3.65525 3.69543 3.80087 3.88154 3.90785 3.99025 4.16111 4.27371 4.32381 4.44354 4.47229 4.48322 4.58717 4.62949 4.66473 4.73256 4.86174 4.96278 4.97921 4.99643 5.08174 5.12483 5.16342 5.19849 5.23792 5.27658 5.32815 5.37845 5.46706 5.51607 5.62875 5.67391 5.74850 6.24790 6.36750 6.96630 7.13160 7.28013 7.85549 8.34730 9.14747 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.002943 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.700121 B = 9511.220556 C =10835.110650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.049 4.049 3 Si 0.961 3.039 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.081 4.081 13 C 0.134 3.866 14 N -0.724 5.724 15 C 0.515 3.485 16 O -0.557 6.557 17 C -0.024 4.024 18 H 0.156 0.844 19 C -0.097 4.097 20 C -0.109 4.109 21 C -0.039 4.039 22 C -0.012 4.012 23 N -0.289 5.289 24 N -0.112 5.112 25 N -0.372 5.372 26 H 0.450 0.550 27 C -0.010 4.010 28 C -0.120 4.120 29 C 0.175 3.825 30 H 0.249 0.751 31 H 0.019 0.981 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.401 0.599 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.061 0.939 47 H 0.003 0.997 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 -20.827 -12.799 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.789 3.211 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.015 3.985 11 C -0.154 4.154 12 C -0.100 4.100 13 C 0.010 3.990 14 N -0.377 5.377 15 C 0.301 3.699 16 O -0.434 6.434 17 C -0.047 4.047 18 H 0.173 0.827 19 C -0.135 4.135 20 C -0.147 4.147 21 C -0.078 4.078 22 C -0.153 4.153 23 N -0.154 5.154 24 N -0.090 5.090 25 N -0.094 5.094 26 H 0.298 0.702 27 C -0.146 4.146 28 C -0.159 4.159 29 C 0.049 3.951 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.237 0.763 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.021 0.979 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.933 -19.594 -13.366 24.449 hybrid contribution 0.511 1.196 1.377 1.894 sum -5.422 -18.398 -11.989 22.619 Atomic orbital electron populations 1.70155 1.06440 1.25731 1.55452 1.25712 0.96038 1.01246 1.01476 0.85362 0.78273 0.80010 0.77412 1.21576 1.22114 1.19357 1.19496 0.92929 0.86290 1.40491 0.91834 1.44322 1.36002 1.02234 1.50985 1.21069 0.97353 0.85810 0.94305 1.21848 0.96652 0.99845 0.97069 1.21213 0.99559 0.93679 0.95567 1.21399 0.85737 0.99547 0.92288 1.46195 1.14587 1.46460 1.30435 1.20835 0.90345 0.78479 0.80242 1.90725 1.36350 1.47611 1.68734 1.20243 0.95572 0.89688 0.99191 0.82707 1.21522 0.99496 0.98780 0.93706 1.21672 0.98083 0.96004 0.98933 1.20247 1.04354 0.89069 0.94094 1.22406 1.03791 0.93456 0.95654 1.74840 1.18413 1.07373 1.14755 1.78642 1.17650 1.17402 0.95346 1.44955 1.43330 1.06051 1.15073 0.70167 1.21806 1.08271 0.89296 0.95274 1.22048 1.00055 0.95849 0.97955 1.20592 0.87963 0.97587 0.88938 0.94177 0.96275 0.93028 0.89367 0.92855 0.89833 0.90151 0.92674 0.76330 0.91940 0.88198 0.89770 0.87531 0.88409 0.89338 0.93726 0.92080 0.97852 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 11.19 21.65 0.24 -54.12 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 3 Si 0.96 45.02 29.59 68.60 2.03 47.05 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.26 -14.21 9.58 84.03 0.81 -13.41 16 8 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 9 N -0.61 -29.42 2.99 -699.09 -2.09 -31.52 16 10 C 0.14 5.35 6.52 86.36 0.56 5.91 16 11 C -0.11 -3.31 5.36 30.67 0.16 -3.14 16 12 C -0.08 -2.10 2.19 -10.77 -0.02 -2.12 16 13 C 0.13 2.94 5.06 86.38 0.44 3.37 16 14 N -0.72 -13.18 4.83 -463.05 -2.24 -15.42 16 15 C 0.51 10.08 7.15 87.65 0.63 10.70 16 16 O -0.56 -14.98 15.84 -3.04 -0.05 -15.03 16 17 C -0.02 -0.32 2.91 -12.19 -0.04 -0.35 16 18 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 19 C -0.10 -1.08 4.66 30.78 0.14 -0.94 16 20 C -0.11 -0.78 5.90 30.77 0.18 -0.59 16 21 C -0.04 -0.48 6.30 29.96 0.19 -0.29 16 22 C -0.01 -0.25 7.11 41.75 0.30 0.04 16 23 N -0.29 -8.11 12.40 -48.98 -0.61 -8.71 16 24 N -0.11 -3.21 13.40 37.02 0.50 -2.72 16 25 N -0.37 -8.07 6.75 -48.27 -0.33 -8.39 16 26 H 0.45 8.11 6.04 -219.67 -1.33 6.79 16 27 C -0.01 -0.18 6.38 41.50 0.26 0.08 16 28 C -0.12 -3.89 5.25 30.67 0.16 -3.73 16 29 C 0.17 7.86 5.31 86.36 0.46 8.32 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.40 5.80 5.68 -92.70 -0.53 5.28 16 39 H 0.06 0.99 7.75 -2.39 -0.02 0.97 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.43 8.12 -2.38 -0.02 0.41 16 42 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.06 1.60 6.39 -2.38 -0.02 1.59 16 47 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.05 2.59 6.04 -2.39 -0.01 2.57 16 Total: -1.00 -74.17 372.87 1.24 -72.93 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.87 Total: 14.39 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.65 Total: 1.54 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.53 Total: -120.89 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.05 Total: -15.03 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.17 1.24 -72.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597292636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.179 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds