Wall clock time and date at job start Tue Mar 31 2020 17:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50695 * 109.46880 * 239.99854 * 2 1 3 5 5 H 1.08005 * 119.99691 * 245.45152 * 4 2 1 6 6 C 1.37876 * 120.00408 * 65.45362 * 4 2 1 7 7 N 1.31511 * 119.99779 * 9.61877 * 6 4 2 8 8 Si 1.86801 * 120.00254 * 189.61777 * 6 4 2 9 9 H 1.48497 * 109.47085 * 84.99782 * 8 6 4 10 10 H 1.48501 * 109.46904 * 204.99222 * 8 6 4 11 11 H 1.48501 * 109.46903 * 324.99495 * 8 6 4 12 12 N 1.46495 * 109.47091 * 119.99884 * 2 1 3 13 13 C 1.46503 * 120.00337 * 59.99975 * 12 2 1 14 14 S 1.65605 * 119.99941 * 239.99919 * 12 2 1 15 15 O 1.42105 * 106.39958 * 336.45954 * 14 12 2 16 16 O 1.42100 * 106.40216 * 203.54345 * 14 12 2 17 17 N 1.65595 * 107.22032 * 90.00055 * 14 12 2 18 18 C 1.46501 * 120.00309 * 64.99821 * 17 14 12 19 19 C 1.52997 * 109.47314 * 165.00082 * 18 17 14 20 20 H 1.08995 * 109.04515 * 306.00871 * 19 18 17 21 21 C 1.54509 * 109.05584 * 187.08995 * 19 18 17 22 22 C 1.50462 * 108.85407 * 162.26761 * 21 19 18 23 23 C 1.54298 * 113.03389 * 92.15439 * 22 21 19 24 24 C 1.54062 * 112.28507 * 318.30321 * 23 22 21 25 25 N 1.44271 * 111.98497 * 318.91137 * 24 23 22 26 26 C 1.46894 * 111.00723 * 219.31691 * 25 24 23 27 27 C 1.45863 * 109.05662 * 65.00386 * 19 18 17 28 28 H 1.08991 * 109.47560 * 63.29932 * 1 2 3 29 29 H 1.09007 * 109.46951 * 183.30266 * 1 2 3 30 30 H 1.09003 * 109.46687 * 303.29488 * 1 2 3 31 31 H 0.97003 * 120.00394 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46888 * 269.99819 * 13 12 2 33 33 H 1.08998 * 109.47050 * 29.99647 * 13 12 2 34 34 H 1.09006 * 109.47003 * 149.99934 * 13 12 2 35 35 H 0.97000 * 119.99999 * 245.00134 * 17 14 12 36 36 H 1.09002 * 109.46574 * 45.00212 * 18 17 14 37 37 H 1.08998 * 109.46948 * 285.00764 * 18 17 14 38 38 H 1.09008 * 109.57491 * 282.07855 * 21 19 18 39 39 H 1.09003 * 109.57512 * 42.45207 * 21 19 18 40 40 H 1.09000 * 108.76722 * 331.23416 * 22 21 19 41 41 H 1.09002 * 108.67607 * 213.00515 * 22 21 19 42 42 H 1.08998 * 108.91419 * 197.58083 * 23 22 21 43 43 H 1.09000 * 108.84119 * 78.97980 * 23 22 21 44 44 H 1.09006 * 108.97530 * 198.27310 * 24 23 22 45 45 H 1.09000 * 108.91539 * 79.51872 * 24 23 22 46 46 H 1.09003 * 109.46642 * 298.02250 * 26 25 24 47 47 H 1.08998 * 109.46871 * 58.01394 * 26 25 24 48 48 H 1.08998 * 109.47478 * 178.01595 * 26 25 24 49 49 H 1.08995 * 108.79143 * 302.75585 * 27 19 18 50 50 H 1.09002 * 108.79276 * 60.97959 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5787 -1.6371 -1.1337 6 6 1.7944 -0.1776 -2.4796 7 7 1.3002 1.0358 -2.5936 8 14 2.1742 -1.1790 -4.0101 9 1 1.0213 -2.0609 -4.3232 10 1 2.4211 -0.2628 -5.1524 11 1 3.3821 -2.0092 -3.7712 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.5795 1.1830 1.5747 16 8 3.7119 -0.8788 2.9814 17 7 1.9608 0.8092 3.3998 18 6 1.1510 -0.0350 4.2817 19 6 0.6088 0.8078 5.4378 20 1 1.4401 1.3113 5.9313 21 6 -0.0914 -0.1214 6.4544 22 6 -0.2331 0.6082 7.7626 23 6 -1.5763 1.3561 7.8944 24 6 -1.9783 2.0694 6.5893 25 7 -0.8508 2.7044 5.9515 26 6 -1.2301 4.0058 5.3855 27 6 -0.3080 1.8105 4.9071 28 1 -0.3634 0.4617 -0.9180 29 1 -0.3633 -1.0260 0.0592 30 1 -0.3633 0.5642 0.8590 31 1 1.1324 1.4106 -3.4724 32 1 0.7376 -2.1443 1.9995 33 1 1.5295 -2.5969 0.4710 34 1 2.4630 -2.5818 1.9865 35 1 1.9056 1.7752 3.4681 36 1 1.7671 -0.8421 4.6782 37 1 0.3189 -0.4565 3.7178 38 1 -1.0780 -0.3948 6.0800 39 1 0.5077 -1.0202 6.6006 40 1 0.5798 1.3288 7.8522 41 1 -0.1524 -0.1136 8.5754 42 1 -1.4921 2.0962 8.6901 43 1 -2.3537 0.6395 8.1595 44 1 -2.7298 2.8258 6.8158 45 1 -2.4073 1.3378 5.9045 46 1 -1.9918 3.8606 4.6194 47 1 -1.6263 4.6439 6.1754 48 1 -0.3539 4.4784 4.9418 49 1 0.2203 2.4135 4.1686 50 1 -1.1369 1.3025 4.4142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599415713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:01 Heat of formation + Delta-G solvation = -77.751656 kcal Electronic energy + Delta-G solvation = -28883.178788 eV Core-core repulsion = 25071.942013 eV Total energy + Delta-G solvation = -3811.236775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79297 -36.65830 -36.18856 -35.93037 -35.17893 -34.28973 -32.54255 -31.88381 -29.20791 -28.13298 -26.31532 -25.51497 -25.14970 -25.04824 -22.93810 -20.87727 -20.42118 -19.86856 -18.69837 -17.30203 -16.85362 -16.55379 -16.21907 -15.92651 -15.50745 -15.12383 -14.77709 -14.65792 -14.21365 -13.91276 -13.54512 -13.45918 -13.31680 -12.98952 -12.91014 -12.71395 -12.59426 -12.04361 -12.01666 -11.81003 -11.74544 -11.57272 -11.47001 -11.42829 -11.18838 -11.07151 -10.95057 -10.94286 -10.82687 -10.68069 -10.59946 -10.47399 -10.35426 -10.30756 -10.02514 -9.33939 -9.24292 -8.54003 -8.42212 -7.99095 -6.09513 -4.12478 1.25991 3.28488 3.35384 3.38332 3.54370 3.66484 4.15610 4.40518 4.50193 4.60859 4.78242 4.85975 4.89485 5.04020 5.09658 5.12475 5.15469 5.23288 5.26288 5.47746 5.48427 5.54583 5.57774 5.62733 5.67816 5.70837 5.72397 5.77028 5.91676 6.00205 6.03831 6.09132 6.18475 6.22971 6.29641 6.36672 6.61227 6.71016 6.75603 6.84577 6.95450 6.97402 7.16050 7.41109 7.62325 7.76996 7.95839 8.26202 8.89145 9.51696 10.98425 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.003283 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.220935 B = 8527.075346 C = 9126.134087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.267 3.733 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.095 3.905 14 S 2.779 3.221 15 O -0.974 6.974 16 O -0.998 6.998 17 N -1.134 6.134 18 C 0.126 3.874 19 C -0.088 4.088 20 H 0.085 0.915 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.108 4.108 24 C 0.052 3.948 25 N -0.534 5.534 26 C 0.025 3.975 27 C 0.056 3.944 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.026 0.974 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 0.726 19.064 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.788 3.212 15 O -0.957 6.957 16 O -0.981 6.981 17 N -0.894 5.894 18 C -0.002 4.002 19 C -0.109 4.109 20 H 0.104 0.896 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.077 4.077 25 N -0.258 5.258 26 C -0.123 4.123 27 C -0.072 4.072 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.847 0.812 19.269 20.466 hybrid contribution -1.065 -0.173 -1.557 1.894 sum -7.913 0.639 17.712 19.410 Atomic orbital electron populations 1.22028 0.98699 0.99113 1.00057 1.18717 0.90744 0.93567 0.80584 0.91735 1.21294 1.36236 1.08687 0.90179 0.91854 1.24914 0.95150 0.94652 0.98996 1.69949 1.44627 1.13738 1.24114 0.86568 0.78738 0.80033 0.82423 1.20553 1.21239 1.19874 1.57647 1.69936 1.19749 1.35773 1.21328 0.98678 0.82556 1.02616 1.01931 0.73635 0.73177 0.72431 1.93622 1.74345 1.55928 1.71854 1.93519 1.69246 1.60842 1.74508 1.56268 1.62621 1.17275 1.53211 1.21303 0.94773 0.93190 0.90922 1.20380 0.98952 0.95803 0.95732 0.89633 1.21375 1.00572 0.97870 0.95060 1.21169 0.98004 0.98796 0.96729 1.21930 0.97282 0.98574 0.96881 1.21955 0.91839 0.97557 0.96366 1.61538 1.31524 1.03502 1.29192 1.22475 1.00445 0.90621 0.98789 1.21101 0.98411 0.94784 0.92856 0.90768 0.94653 0.96761 0.92687 0.94587 0.89916 0.91858 0.75634 0.90308 0.91926 0.91880 0.91379 0.91396 0.92822 0.92185 0.92385 0.92116 0.94025 0.95501 0.91476 0.91101 0.90994 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.12 37.16 0.34 -2.71 16 2 C 0.27 6.44 2.49 -69.09 -0.17 6.27 16 3 H 0.06 1.75 6.85 -51.93 -0.36 1.40 16 4 C -0.52 -14.02 8.01 -34.44 -0.28 -14.30 16 5 H 0.06 1.68 7.16 -52.48 -0.38 1.30 16 6 C 0.07 1.79 5.17 -17.82 -0.09 1.70 16 7 N -0.89 -24.88 12.16 55.43 0.67 -24.21 16 8 Si 0.89 21.00 29.55 -169.99 -5.02 15.98 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -20.11 3.12 -115.85 -0.36 -20.48 16 13 C 0.09 1.64 9.58 59.85 0.57 2.21 16 14 S 2.78 54.06 6.14 -107.50 -0.66 53.40 16 15 O -0.97 -22.89 16.70 -57.17 -0.95 -23.84 16 16 O -1.00 -20.57 16.21 -57.17 -0.93 -21.50 16 17 N -1.13 -16.42 5.89 -10.61 -0.06 -16.48 16 18 C 0.13 1.50 5.56 -4.04 -0.02 1.48 16 19 C -0.09 -0.90 2.06 -93.21 -0.19 -1.09 16 20 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 21 C -0.11 -0.96 4.95 -27.21 -0.13 -1.10 16 22 C -0.11 -0.90 5.42 -27.32 -0.15 -1.05 16 23 C -0.11 -0.84 6.15 -25.50 -0.16 -0.99 16 24 C 0.05 0.44 5.18 -4.68 -0.02 0.42 16 25 N -0.53 -5.15 4.48 -247.89 -1.11 -6.26 16 26 C 0.02 0.22 9.19 60.06 0.55 0.77 16 27 C 0.06 0.58 4.12 -6.71 -0.03 0.55 16 28 H 0.07 1.80 6.84 -51.93 -0.36 1.44 16 29 H 0.03 0.71 7.56 -51.92 -0.39 0.32 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.50 6.92 -51.93 -0.36 1.14 16 34 H 0.06 1.03 7.02 -51.93 -0.36 0.67 16 35 H 0.41 5.36 7.27 -34.47 -0.25 5.11 16 36 H 0.08 0.94 7.61 -51.93 -0.40 0.55 16 37 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 38 H 0.06 0.54 7.15 -51.92 -0.37 0.17 16 39 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 40 H 0.07 0.63 7.38 -51.93 -0.38 0.25 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.47 7.49 -51.93 -0.39 0.08 16 45 H 0.04 0.37 6.50 -51.93 -0.34 0.03 16 46 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.07 0.51 8.01 -51.93 -0.42 0.09 16 48 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 49 H 0.07 0.79 6.18 -51.93 -0.32 0.46 16 50 H 0.04 0.45 7.24 -51.93 -0.38 0.07 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -31.92 388.62 -11.11 -43.03 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.76 Total: 2.35 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.22 Total: -7.85 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.86 Total: -67.42 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.88 Total: -45.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.66 Total: 53.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.92 -11.11 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.722 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds