Wall clock time and date at job start Tue Mar 31 2020 17:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50695 * 109.46880 * 239.99854 * 2 1 3 5 5 H 1.08005 * 119.99691 * 245.45152 * 4 2 1 6 6 C 1.37876 * 120.00408 * 65.45362 * 4 2 1 7 7 N 1.31511 * 119.99779 * 9.61877 * 6 4 2 8 8 Si 1.86801 * 120.00254 * 189.61777 * 6 4 2 9 9 H 1.48497 * 109.47085 * 84.99782 * 8 6 4 10 10 H 1.48501 * 109.46904 * 204.99222 * 8 6 4 11 11 H 1.48501 * 109.46903 * 324.99495 * 8 6 4 12 12 N 1.46495 * 109.47091 * 119.99884 * 2 1 3 13 13 C 1.46503 * 120.00337 * 59.99975 * 12 2 1 14 14 S 1.65605 * 119.99941 * 239.99919 * 12 2 1 15 15 O 1.42105 * 106.39958 * 336.45954 * 14 12 2 16 16 O 1.42100 * 106.40216 * 203.54345 * 14 12 2 17 17 N 1.65595 * 107.22032 * 90.00055 * 14 12 2 18 18 C 1.46501 * 120.00309 * 64.99821 * 17 14 12 19 19 C 1.52997 * 109.47314 * 165.00082 * 18 17 14 20 20 H 1.08995 * 109.04515 * 306.00871 * 19 18 17 21 21 C 1.54509 * 109.05584 * 187.08995 * 19 18 17 22 22 C 1.50462 * 108.85407 * 162.26761 * 21 19 18 23 23 C 1.54298 * 113.03389 * 92.15439 * 22 21 19 24 24 C 1.54062 * 112.28507 * 318.30321 * 23 22 21 25 25 N 1.44271 * 111.98497 * 318.91137 * 24 23 22 26 26 C 1.46894 * 111.00723 * 219.31691 * 25 24 23 27 27 C 1.45863 * 109.05662 * 65.00386 * 19 18 17 28 28 H 1.08991 * 109.47560 * 63.29932 * 1 2 3 29 29 H 1.09007 * 109.46951 * 183.30266 * 1 2 3 30 30 H 1.09003 * 109.46687 * 303.29488 * 1 2 3 31 31 H 0.97003 * 120.00394 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46888 * 269.99819 * 13 12 2 33 33 H 1.08998 * 109.47050 * 29.99647 * 13 12 2 34 34 H 1.09006 * 109.47003 * 149.99934 * 13 12 2 35 35 H 0.97000 * 119.99999 * 245.00134 * 17 14 12 36 36 H 1.09002 * 109.46574 * 45.00212 * 18 17 14 37 37 H 1.08998 * 109.46948 * 285.00764 * 18 17 14 38 38 H 1.09008 * 109.57491 * 282.07855 * 21 19 18 39 39 H 1.09003 * 109.57512 * 42.45207 * 21 19 18 40 40 H 1.09000 * 108.76722 * 331.23416 * 22 21 19 41 41 H 1.09002 * 108.67607 * 213.00515 * 22 21 19 42 42 H 1.08998 * 108.91419 * 197.58083 * 23 22 21 43 43 H 1.09000 * 108.84119 * 78.97980 * 23 22 21 44 44 H 1.09006 * 108.97530 * 198.27310 * 24 23 22 45 45 H 1.09000 * 108.91539 * 79.51872 * 24 23 22 46 46 H 1.09003 * 109.46642 * 298.02250 * 26 25 24 47 47 H 1.08998 * 109.46871 * 58.01394 * 26 25 24 48 48 H 1.08998 * 109.47478 * 178.01595 * 26 25 24 49 49 H 1.08995 * 108.79143 * 302.75585 * 27 19 18 50 50 H 1.09002 * 108.79276 * 60.97959 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5787 -1.6371 -1.1337 6 6 1.7944 -0.1776 -2.4796 7 7 1.3002 1.0358 -2.5936 8 14 2.1742 -1.1790 -4.0101 9 1 1.0213 -2.0609 -4.3232 10 1 2.4211 -0.2628 -5.1524 11 1 3.3821 -2.0092 -3.7712 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.5795 1.1830 1.5747 16 8 3.7119 -0.8788 2.9814 17 7 1.9608 0.8092 3.3998 18 6 1.1510 -0.0350 4.2817 19 6 0.6088 0.8078 5.4378 20 1 1.4401 1.3113 5.9313 21 6 -0.0914 -0.1214 6.4544 22 6 -0.2331 0.6082 7.7626 23 6 -1.5763 1.3561 7.8944 24 6 -1.9783 2.0694 6.5893 25 7 -0.8508 2.7044 5.9515 26 6 -1.2301 4.0058 5.3855 27 6 -0.3080 1.8105 4.9071 28 1 -0.3634 0.4617 -0.9180 29 1 -0.3633 -1.0260 0.0592 30 1 -0.3633 0.5642 0.8590 31 1 1.1324 1.4106 -3.4724 32 1 0.7376 -2.1443 1.9995 33 1 1.5295 -2.5969 0.4710 34 1 2.4630 -2.5818 1.9865 35 1 1.9056 1.7752 3.4681 36 1 1.7671 -0.8421 4.6782 37 1 0.3189 -0.4565 3.7178 38 1 -1.0780 -0.3948 6.0800 39 1 0.5077 -1.0202 6.6006 40 1 0.5798 1.3288 7.8522 41 1 -0.1524 -0.1136 8.5754 42 1 -1.4921 2.0962 8.6901 43 1 -2.3537 0.6395 8.1595 44 1 -2.7298 2.8258 6.8158 45 1 -2.4073 1.3378 5.9045 46 1 -1.9918 3.8606 4.6194 47 1 -1.6263 4.6439 6.1754 48 1 -0.3539 4.4784 4.9418 49 1 0.2203 2.4135 4.1686 50 1 -1.1369 1.3025 4.4142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599415713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:00 Heat of formation + Delta-G solvation = -100.982540 kcal Electronic energy + Delta-G solvation = -28884.186154 eV Core-core repulsion = 25071.942013 eV Total energy + Delta-G solvation = -3812.244141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.55793 -38.31000 -37.87080 -36.94058 -36.85900 -35.03252 -34.48816 -32.80207 -30.99868 -28.83290 -27.25269 -27.19592 -26.93928 -25.75384 -23.75622 -22.64813 -21.26440 -20.62511 -20.09279 -18.80872 -18.59058 -18.13857 -17.41101 -16.89333 -16.84532 -16.41869 -15.97989 -15.48915 -15.39583 -15.13304 -14.83084 -14.78057 -14.41518 -14.21056 -13.89099 -13.80045 -13.71932 -13.44424 -13.37854 -13.25387 -13.12516 -13.04993 -12.93749 -12.74273 -12.67554 -12.63878 -12.31255 -12.25302 -12.19561 -11.87910 -11.79114 -11.66646 -11.42352 -11.36030 -11.19937 -11.04962 -10.49325 -10.41185 -9.64987 -9.26799 -8.14181 -6.23762 -0.28665 1.42962 1.44171 1.53161 2.08102 2.43994 2.65994 2.92807 3.16038 3.46980 3.75440 3.89138 4.04854 4.11559 4.14769 4.21916 4.36048 4.38893 4.47781 4.51965 4.59118 4.68804 4.74371 4.76188 4.79507 4.83195 4.86666 4.94671 4.97727 4.98939 5.03016 5.03469 5.12801 5.17733 5.27323 5.32392 5.36708 5.43423 5.49804 5.59456 5.60429 5.65997 5.86820 6.00267 6.10701 6.19643 6.26179 6.28535 6.84187 7.43834 8.92776 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.003283 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.220935 B = 8527.075346 C = 9126.134087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.272 3.728 3 H 0.027 0.973 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.995 5.995 13 C 0.089 3.911 14 S 2.796 3.204 15 O -1.020 7.020 16 O -1.010 7.010 17 N -1.120 6.120 18 C 0.119 3.881 19 C -0.080 4.080 20 H 0.079 0.921 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.106 4.106 24 C 0.049 3.951 25 N -0.541 5.541 26 C 0.024 3.976 27 C 0.056 3.944 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.418 0.582 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.024 0.976 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 -0.477 20.466 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.837 5.837 13 C -0.056 4.056 14 S 2.805 3.195 15 O -1.004 7.004 16 O -0.993 6.993 17 N -0.883 5.883 18 C -0.007 4.007 19 C -0.101 4.101 20 H 0.098 0.902 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.080 4.080 25 N -0.264 5.264 26 C -0.124 4.124 27 C -0.072 4.072 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.134 -0.412 20.684 22.229 hybrid contribution -0.664 0.217 -1.882 2.007 sum -8.798 -0.195 18.802 20.759 Atomic orbital electron populations 1.21817 0.96855 1.00145 0.99706 1.18386 0.91994 0.91666 0.81190 0.95508 1.21656 1.36132 1.08682 0.91595 0.92231 1.25658 0.95231 0.95506 1.01794 1.70060 1.45693 1.14991 1.24660 0.85642 0.78787 0.78681 0.78958 1.19233 1.21271 1.19846 1.57508 1.69942 1.21094 1.35177 1.21533 1.00692 0.80669 1.02748 1.01182 0.73626 0.72307 0.72357 1.93556 1.75995 1.57500 1.73387 1.93497 1.69955 1.61287 1.74550 1.55837 1.62314 1.17917 1.52238 1.21579 0.94736 0.93242 0.91144 1.20311 0.98769 0.95775 0.95203 0.90235 1.21368 1.00713 0.97739 0.94701 1.21149 0.97872 0.98752 0.96807 1.21926 0.97334 0.98766 0.96411 1.22020 0.91624 0.97763 0.96560 1.61565 1.32234 1.03686 1.28933 1.22507 1.00250 0.90489 0.99170 1.21077 0.98287 0.94828 0.92969 0.93500 0.93125 0.94332 0.92699 0.91079 0.90960 0.91012 0.74649 0.89892 0.90868 0.91366 0.90648 0.92642 0.91733 0.92074 0.91161 0.91347 0.94274 0.95708 0.90248 0.91524 0.92011 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 9.12 71.98 0.66 -4.74 16 2 C 0.27 13.20 2.49 44.25 0.11 13.31 16 3 H 0.03 1.51 6.85 -2.39 -0.02 1.50 16 4 C -0.54 -29.15 8.01 25.60 0.20 -28.95 16 5 H 0.06 3.17 7.16 -2.91 -0.02 3.15 16 6 C 0.02 1.00 5.17 84.65 0.44 1.43 16 7 N -0.92 -52.23 12.16 21.45 0.26 -51.96 16 8 Si 0.95 43.15 29.55 68.60 2.03 45.17 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -1.00 -39.89 3.12 -520.45 -1.62 -41.52 16 13 C 0.09 2.91 9.58 127.77 1.22 4.13 16 14 S 2.80 108.27 6.14 -56.49 -0.35 107.92 16 15 O -1.02 -49.23 16.70 -128.00 -2.14 -51.37 16 16 O -1.01 -40.81 16.21 -128.00 -2.07 -42.89 16 17 N -1.12 -31.40 5.89 -187.49 -1.11 -32.51 16 18 C 0.12 2.62 5.56 86.38 0.48 3.10 16 19 C -0.08 -1.48 2.06 -12.47 -0.03 -1.51 16 20 H 0.08 1.60 7.58 -2.39 -0.02 1.58 16 21 C -0.11 -1.60 4.95 30.29 0.15 -1.45 16 22 C -0.11 -1.54 5.42 30.21 0.16 -1.38 16 23 C -0.11 -1.39 6.15 31.39 0.19 -1.20 16 24 C 0.05 0.74 5.18 87.15 0.45 1.19 16 25 N -0.54 -9.64 4.48 -938.17 -4.21 -13.84 16 26 C 0.02 0.39 9.19 127.69 1.17 1.56 16 27 C 0.06 1.08 4.12 83.94 0.35 1.43 16 28 H 0.05 2.27 6.84 -2.39 -0.02 2.25 16 29 H 0.05 1.97 7.56 -2.38 -0.02 1.95 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 2.52 6.92 -2.39 -0.02 2.50 16 34 H 0.07 2.21 7.02 -2.38 -0.02 2.20 16 35 H 0.42 10.74 7.27 -96.75 -0.70 10.04 16 36 H 0.08 1.79 7.61 -2.39 -0.02 1.77 16 37 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 38 H 0.07 0.97 7.15 -2.38 -0.02 0.96 16 39 H 0.07 1.03 7.93 -2.39 -0.02 1.01 16 40 H 0.05 0.94 7.38 -2.39 -0.02 0.92 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.92 7.49 -2.38 -0.02 0.90 16 45 H 0.04 0.61 6.50 -2.39 -0.02 0.60 16 46 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.08 1.08 8.01 -2.39 -0.02 1.06 16 48 H 0.07 1.12 8.05 -2.39 -0.02 1.11 16 49 H 0.06 1.30 6.18 -2.39 -0.01 1.29 16 50 H 0.04 0.78 7.24 -2.39 -0.02 0.77 16 Total: -1.00 -68.69 388.62 -3.43 -72.12 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.21 Total: 21.93 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.56 Total: -13.06 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -6.67 Total: -139.83 kcal Atomic # 8 Polarization: -90.04 SS G_CDS: -4.21 Total: -94.25 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 108.27 SS G_CDS: -0.35 Total: 107.92 kcal Total: -68.69 -3.43 -72.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.863 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds