Wall clock time and date at job start Tue Mar 31 2020 17:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47374 * 2 1 4 4 C 1.50695 * 109.47341 * 120.00593 * 2 1 3 5 5 H 1.08000 * 120.00135 * 87.21854 * 4 2 1 6 6 C 1.37879 * 119.99887 * 267.21664 * 4 2 1 7 7 N 1.31519 * 119.99884 * 176.77106 * 6 4 2 8 8 Si 1.86800 * 120.00031 * 356.77589 * 6 4 2 9 9 H 1.48499 * 109.47070 * 269.83783 * 8 6 4 10 10 H 1.48498 * 109.47042 * 29.84211 * 8 6 4 11 11 H 1.48506 * 109.47101 * 149.83875 * 8 6 4 12 12 N 1.46497 * 109.46910 * 240.00646 * 2 1 3 13 13 C 1.46504 * 120.00009 * 300.00012 * 12 2 1 14 14 S 1.65598 * 120.00415 * 120.00041 * 12 2 1 15 15 O 1.42097 * 106.40717 * 203.54057 * 14 12 2 16 16 O 1.42104 * 106.40162 * 336.45851 * 14 12 2 17 17 N 1.65601 * 107.22047 * 89.99650 * 14 12 2 18 18 C 1.46496 * 119.99734 * 64.99827 * 17 14 12 19 19 C 1.53006 * 109.47102 * 165.00144 * 18 17 14 20 20 H 1.09001 * 109.04453 * 306.01177 * 19 18 17 21 21 C 1.54504 * 109.05711 * 187.08862 * 19 18 17 22 22 C 1.50465 * 108.85033 * 162.26673 * 21 19 18 23 23 C 1.54286 * 113.03483 * 92.15947 * 22 21 19 24 24 C 1.54070 * 112.28868 * 318.29635 * 23 22 21 25 25 N 1.44275 * 111.97813 * 318.92175 * 24 23 22 26 26 C 1.46902 * 110.99722 * 219.30806 * 25 24 23 27 27 C 1.45866 * 109.05332 * 65.00252 * 19 18 17 28 28 H 1.09005 * 109.46630 * 299.72328 * 1 2 3 29 29 H 1.09003 * 109.47263 * 59.72227 * 1 2 3 30 30 H 1.08995 * 109.47247 * 179.72097 * 1 2 3 31 31 H 0.97000 * 119.99779 * 180.02562 * 7 6 4 32 32 H 1.08991 * 109.47192 * 90.00162 * 13 12 2 33 33 H 1.08994 * 109.46968 * 210.00507 * 13 12 2 34 34 H 1.09002 * 109.46869 * 330.00139 * 13 12 2 35 35 H 0.97002 * 120.00273 * 245.00599 * 17 14 12 36 36 H 1.08997 * 109.47992 * 285.00205 * 18 17 14 37 37 H 1.09003 * 109.46953 * 45.00936 * 18 17 14 38 38 H 1.08995 * 109.57527 * 282.08031 * 21 19 18 39 39 H 1.09004 * 109.57459 * 42.45700 * 21 19 18 40 40 H 1.08993 * 108.77221 * 331.23831 * 22 21 19 41 41 H 1.09002 * 108.67517 * 213.00880 * 22 21 19 42 42 H 1.09004 * 108.92082 * 197.57873 * 23 22 21 43 43 H 1.08999 * 108.84931 * 78.97530 * 23 22 21 44 44 H 1.08993 * 108.98478 * 198.27315 * 24 23 22 45 45 H 1.09002 * 108.90978 * 79.51407 * 24 23 22 46 46 H 1.09005 * 109.46893 * 298.01371 * 26 25 24 47 47 H 1.08995 * 109.47422 * 58.01399 * 26 25 24 48 48 H 1.08999 * 109.47140 * 178.02064 * 26 25 24 49 49 H 1.09001 * 108.79136 * 302.75445 * 27 19 18 50 50 H 1.08999 * 108.79383 * 60.98319 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.1696 -1.7817 1.2171 6 6 2.3169 0.0070 2.3729 7 7 2.6944 -0.6196 3.4658 8 14 2.1659 1.8689 2.3684 9 1 3.4643 2.4698 1.9706 10 1 1.1145 2.2779 1.4028 11 1 1.7989 2.3390 3.7284 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5643 -3.5260 16 8 2.6903 1.4974 -2.1192 17 7 4.5437 -0.1041 -1.8181 18 6 5.1356 -1.4439 -1.8417 19 6 6.6577 -1.3311 -1.7337 20 1 7.0209 -0.6620 -2.5138 21 6 7.2830 -2.7290 -1.9386 22 6 8.7424 -2.5654 -2.2664 23 6 9.6502 -2.6136 -1.0199 24 6 9.0551 -1.8319 0.1670 25 7 8.4578 -0.5871 -0.2515 26 6 8.7357 0.4819 0.7171 27 6 7.0026 -0.7745 -0.4303 28 1 -0.3633 0.5096 0.8925 29 1 -0.3634 0.5182 -0.8875 30 1 -0.3633 -1.0276 -0.0050 31 1 2.8942 -0.1148 4.2697 32 1 0.7375 -2.1442 -1.9995 33 1 2.4628 -2.5817 -1.9866 34 1 1.5294 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5282 36 1 4.7540 -2.0247 -1.0020 37 1 4.8735 -1.9405 -2.7760 38 1 7.1772 -3.3138 -1.0250 39 1 6.7789 -3.2377 -2.7604 40 1 8.8843 -1.6077 -2.7669 41 1 9.0387 -3.3635 -2.9472 42 1 10.6208 -2.1869 -1.2728 43 1 9.7880 -3.6537 -0.7245 44 1 9.8470 -1.6213 0.8856 45 1 8.2940 -2.4461 0.6484 46 1 8.2956 0.2230 1.6801 47 1 9.8135 0.5989 0.8298 48 1 8.3041 1.4169 0.3600 49 1 6.5079 0.1903 -0.3184 50 1 6.6370 -1.4463 0.3463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599415717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:07 Heat of formation + Delta-G solvation = -76.863603 kcal Electronic energy + Delta-G solvation = -29378.329233 eV Core-core repulsion = 25567.130968 eV Total energy + Delta-G solvation = -3811.198266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.61801 -36.77576 -36.33904 -35.82712 -35.31389 -34.14829 -32.52701 -31.76330 -29.95319 -27.97170 -26.18651 -25.67327 -25.19175 -24.89783 -22.79453 -20.74265 -20.25968 -19.72803 -18.73795 -17.55216 -17.07319 -16.54042 -16.22330 -15.95041 -15.50242 -15.10606 -14.64869 -14.56433 -14.15168 -13.77602 -13.60730 -13.36288 -13.23337 -12.88751 -12.78533 -12.64924 -12.55149 -12.47962 -11.98859 -11.86403 -11.81803 -11.71800 -11.60081 -11.44396 -11.42133 -11.22497 -10.92330 -10.83425 -10.79539 -10.70456 -10.55097 -10.47526 -10.37187 -10.20509 -9.84361 -9.44149 -9.11513 -8.69852 -8.36008 -8.07806 -6.25290 -4.25688 1.20361 3.18294 3.28662 3.36429 3.45206 3.84540 4.08998 4.27806 4.64509 4.75494 4.91256 4.95372 5.03829 5.08001 5.08991 5.22635 5.28071 5.31213 5.43814 5.53724 5.66502 5.68035 5.70264 5.74570 5.79278 5.86371 5.89476 5.93856 6.03250 6.07888 6.13433 6.13833 6.19116 6.32483 6.33176 6.40644 6.44201 6.46105 6.55965 6.67416 6.94206 7.02412 7.13423 7.16687 7.26856 7.45163 7.65403 8.35980 8.79230 9.36726 10.86385 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.004874 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.827545 B = 5743.696448 C = 7050.417944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.518 4.518 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.858 3.142 9 H -0.273 1.273 10 H -0.257 1.257 11 H -0.284 1.284 12 N -0.986 5.986 13 C 0.104 3.896 14 S 2.779 3.221 15 O -0.996 6.996 16 O -0.988 6.988 17 N -1.127 6.127 18 C 0.125 3.875 19 C -0.085 4.085 20 H 0.082 0.918 21 C -0.111 4.111 22 C -0.108 4.108 23 C -0.108 4.108 24 C 0.051 3.949 25 N -0.534 5.534 26 C 0.025 3.975 27 C 0.054 3.946 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.266 0.734 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.028 0.972 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.960 -3.604 -7.732 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.074 0.926 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.684 3.316 9 H -0.198 1.198 10 H -0.181 1.181 11 H -0.210 1.210 12 N -0.828 5.828 13 C -0.042 4.042 14 S 2.788 3.212 15 O -0.980 6.980 16 O -0.972 6.972 17 N -0.887 5.887 18 C -0.002 4.002 19 C -0.106 4.106 20 H 0.101 0.899 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.078 4.078 25 N -0.257 5.257 26 C -0.124 4.124 27 C -0.074 4.074 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.820 -3.099 -8.830 14.305 hybrid contribution 0.018 0.884 1.608 1.835 sum 10.838 -2.215 -7.222 13.211 Atomic orbital electron populations 1.22184 0.98032 1.00825 0.99381 1.19096 0.91739 0.92981 0.83165 0.92597 1.21177 1.44169 0.96350 0.94020 0.89987 1.24941 0.94108 0.98024 0.95419 1.69886 1.45239 1.35912 1.01637 0.87143 0.79939 0.86600 0.77892 1.19837 1.18088 1.20978 1.57819 1.64692 1.21408 1.38883 1.21237 0.99141 0.81875 1.01950 1.01930 0.72735 0.73062 0.73483 1.93541 1.86039 1.76241 1.42145 1.93573 1.83888 1.32772 1.87013 1.55989 1.32101 1.15167 1.85405 1.21342 0.93364 0.83394 1.02116 1.20350 0.93751 0.97752 0.98700 0.89921 1.21372 0.95723 0.95846 1.01963 1.21158 0.94328 1.01884 0.97201 1.21924 0.98713 0.98761 0.95186 1.21960 0.98698 0.90796 0.96392 1.61570 1.11342 1.06219 1.46599 1.22465 1.01195 0.94835 0.93859 1.21106 0.87286 1.01535 0.97426 0.92632 0.95396 0.92940 0.92450 0.93832 0.92904 0.90070 0.75556 0.91137 0.90569 0.91699 0.91507 0.91498 0.92933 0.92309 0.92410 0.92186 0.93809 0.95302 0.91601 0.91297 0.91082 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.13 37.16 0.34 -2.65 16 2 C 0.23 5.29 2.18 -69.09 -0.15 5.13 16 3 H 0.06 1.35 4.16 -51.93 -0.22 1.13 16 4 C -0.52 -13.07 8.72 -34.44 -0.30 -13.37 16 5 H 0.08 2.20 6.83 -52.49 -0.36 1.84 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -25.08 13.96 55.43 0.77 -24.31 16 8 Si 0.86 20.50 26.74 -169.99 -4.55 15.95 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.26 -6.00 6.53 56.52 0.37 -5.63 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.99 -19.46 3.12 -115.86 -0.36 -19.82 16 13 C 0.10 1.76 9.33 59.85 0.56 2.32 16 14 S 2.78 53.16 6.09 -107.50 -0.66 52.51 16 15 O -1.00 -19.89 16.68 -57.17 -0.95 -20.85 16 16 O -0.99 -21.79 16.70 -57.17 -0.95 -22.74 16 17 N -1.13 -17.91 5.89 -10.61 -0.06 -17.97 16 18 C 0.13 1.72 5.56 -4.04 -0.02 1.70 16 19 C -0.09 -1.03 2.06 -93.20 -0.19 -1.22 16 20 H 0.08 1.01 7.58 -51.93 -0.39 0.61 16 21 C -0.11 -1.16 4.95 -27.21 -0.13 -1.29 16 22 C -0.11 -1.05 5.42 -27.32 -0.15 -1.20 16 23 C -0.11 -1.01 6.14 -25.50 -0.16 -1.17 16 24 C 0.05 0.55 5.18 -4.67 -0.02 0.52 16 25 N -0.53 -6.37 4.48 -247.87 -1.11 -7.48 16 26 C 0.02 0.28 9.19 60.07 0.55 0.83 16 27 C 0.05 0.71 4.12 -6.70 -0.03 0.68 16 28 H 0.05 1.16 7.67 -51.93 -0.40 0.76 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 34 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 35 H 0.41 6.07 7.27 -34.47 -0.25 5.82 16 36 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 37 H 0.08 1.00 7.61 -51.93 -0.40 0.60 16 38 H 0.06 0.70 7.15 -51.93 -0.37 0.33 16 39 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 40 H 0.07 0.71 7.38 -51.93 -0.38 0.33 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.60 7.49 -51.93 -0.39 0.21 16 45 H 0.04 0.51 6.50 -51.93 -0.34 0.17 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.63 8.01 -51.93 -0.42 0.22 16 48 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 49 H 0.07 0.99 6.18 -51.93 -0.32 0.67 16 50 H 0.05 0.70 7.24 -51.93 -0.38 0.32 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -30.58 386.25 -10.56 -41.14 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.71 Total: 5.49 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.20 Total: -7.73 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.76 Total: -69.59 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.91 Total: -43.59 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.55 Total: 15.95 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.66 Total: 52.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.58 -10.56 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.720 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds