Wall clock time and date at job start Tue Mar 31 2020 17:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47374 * 2 1 4 4 C 1.50695 * 109.47341 * 120.00593 * 2 1 3 5 5 H 1.08000 * 120.00135 * 87.21854 * 4 2 1 6 6 C 1.37879 * 119.99887 * 267.21664 * 4 2 1 7 7 N 1.31519 * 119.99884 * 176.77106 * 6 4 2 8 8 Si 1.86800 * 120.00031 * 356.77589 * 6 4 2 9 9 H 1.48499 * 109.47070 * 269.83783 * 8 6 4 10 10 H 1.48498 * 109.47042 * 29.84211 * 8 6 4 11 11 H 1.48506 * 109.47101 * 149.83875 * 8 6 4 12 12 N 1.46497 * 109.46910 * 240.00646 * 2 1 3 13 13 C 1.46504 * 120.00009 * 300.00012 * 12 2 1 14 14 S 1.65598 * 120.00415 * 120.00041 * 12 2 1 15 15 O 1.42097 * 106.40717 * 203.54057 * 14 12 2 16 16 O 1.42104 * 106.40162 * 336.45851 * 14 12 2 17 17 N 1.65601 * 107.22047 * 89.99650 * 14 12 2 18 18 C 1.46496 * 119.99734 * 64.99827 * 17 14 12 19 19 C 1.53006 * 109.47102 * 165.00144 * 18 17 14 20 20 H 1.09001 * 109.04453 * 306.01177 * 19 18 17 21 21 C 1.54504 * 109.05711 * 187.08862 * 19 18 17 22 22 C 1.50465 * 108.85033 * 162.26673 * 21 19 18 23 23 C 1.54286 * 113.03483 * 92.15947 * 22 21 19 24 24 C 1.54070 * 112.28868 * 318.29635 * 23 22 21 25 25 N 1.44275 * 111.97813 * 318.92175 * 24 23 22 26 26 C 1.46902 * 110.99722 * 219.30806 * 25 24 23 27 27 C 1.45866 * 109.05332 * 65.00252 * 19 18 17 28 28 H 1.09005 * 109.46630 * 299.72328 * 1 2 3 29 29 H 1.09003 * 109.47263 * 59.72227 * 1 2 3 30 30 H 1.08995 * 109.47247 * 179.72097 * 1 2 3 31 31 H 0.97000 * 119.99779 * 180.02562 * 7 6 4 32 32 H 1.08991 * 109.47192 * 90.00162 * 13 12 2 33 33 H 1.08994 * 109.46968 * 210.00507 * 13 12 2 34 34 H 1.09002 * 109.46869 * 330.00139 * 13 12 2 35 35 H 0.97002 * 120.00273 * 245.00599 * 17 14 12 36 36 H 1.08997 * 109.47992 * 285.00205 * 18 17 14 37 37 H 1.09003 * 109.46953 * 45.00936 * 18 17 14 38 38 H 1.08995 * 109.57527 * 282.08031 * 21 19 18 39 39 H 1.09004 * 109.57459 * 42.45700 * 21 19 18 40 40 H 1.08993 * 108.77221 * 331.23831 * 22 21 19 41 41 H 1.09002 * 108.67517 * 213.00880 * 22 21 19 42 42 H 1.09004 * 108.92082 * 197.57873 * 23 22 21 43 43 H 1.08999 * 108.84931 * 78.97530 * 23 22 21 44 44 H 1.08993 * 108.98478 * 198.27315 * 24 23 22 45 45 H 1.09002 * 108.90978 * 79.51407 * 24 23 22 46 46 H 1.09005 * 109.46893 * 298.01371 * 26 25 24 47 47 H 1.08995 * 109.47422 * 58.01399 * 26 25 24 48 48 H 1.08999 * 109.47140 * 178.02064 * 26 25 24 49 49 H 1.09001 * 108.79136 * 302.75445 * 27 19 18 50 50 H 1.08999 * 108.79383 * 60.98319 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.1696 -1.7817 1.2171 6 6 2.3169 0.0070 2.3729 7 7 2.6944 -0.6196 3.4658 8 14 2.1659 1.8689 2.3684 9 1 3.4643 2.4698 1.9706 10 1 1.1145 2.2779 1.4028 11 1 1.7989 2.3390 3.7284 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5643 -3.5260 16 8 2.6903 1.4974 -2.1192 17 7 4.5437 -0.1041 -1.8181 18 6 5.1356 -1.4439 -1.8417 19 6 6.6577 -1.3311 -1.7337 20 1 7.0209 -0.6620 -2.5138 21 6 7.2830 -2.7290 -1.9386 22 6 8.7424 -2.5654 -2.2664 23 6 9.6502 -2.6136 -1.0199 24 6 9.0551 -1.8319 0.1670 25 7 8.4578 -0.5871 -0.2515 26 6 8.7357 0.4819 0.7171 27 6 7.0026 -0.7745 -0.4303 28 1 -0.3633 0.5096 0.8925 29 1 -0.3634 0.5182 -0.8875 30 1 -0.3633 -1.0276 -0.0050 31 1 2.8942 -0.1148 4.2697 32 1 0.7375 -2.1442 -1.9995 33 1 2.4628 -2.5817 -1.9866 34 1 1.5294 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5282 36 1 4.7540 -2.0247 -1.0020 37 1 4.8735 -1.9405 -2.7760 38 1 7.1772 -3.3138 -1.0250 39 1 6.7789 -3.2377 -2.7604 40 1 8.8843 -1.6077 -2.7669 41 1 9.0387 -3.3635 -2.9472 42 1 10.6208 -2.1869 -1.2728 43 1 9.7880 -3.6537 -0.7245 44 1 9.8470 -1.6213 0.8856 45 1 8.2940 -2.4461 0.6484 46 1 8.2956 0.2230 1.6801 47 1 9.8135 0.5989 0.8298 48 1 8.3041 1.4169 0.3600 49 1 6.5079 0.1903 -0.3184 50 1 6.6370 -1.4463 0.3463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599415717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:07 Heat of formation + Delta-G solvation = -99.290225 kcal Electronic energy + Delta-G solvation = -29379.301725 eV Core-core repulsion = 25567.130968 eV Total energy + Delta-G solvation = -3812.170757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57883 -38.38568 -37.99654 -36.96128 -36.92000 -35.05026 -34.48575 -32.82687 -31.67169 -28.87054 -27.38323 -27.19848 -26.96071 -25.78376 -23.78767 -22.47402 -21.29611 -20.66054 -20.13995 -19.29940 -18.59647 -18.28549 -17.52629 -16.93516 -16.89829 -16.39663 -16.02172 -15.53622 -15.41242 -15.22263 -14.82013 -14.68482 -14.50522 -14.41370 -14.24467 -13.93649 -13.77518 -13.54008 -13.41222 -13.39362 -13.21983 -13.10609 -13.07783 -13.00321 -12.76815 -12.57751 -12.47402 -12.34351 -12.08340 -11.82474 -11.77428 -11.69538 -11.44068 -11.38358 -11.26207 -11.06587 -10.75056 -10.41627 -9.70111 -9.33565 -8.31173 -6.33095 -0.31869 1.28040 1.35512 1.44196 1.96025 2.29930 2.58113 2.88979 3.07158 3.38761 3.72500 3.86131 4.01501 4.04662 4.07964 4.18395 4.32104 4.36466 4.43467 4.44547 4.48830 4.63233 4.65565 4.71560 4.73656 4.77472 4.80485 4.84777 4.88479 4.92187 4.96174 4.97795 4.98904 5.13496 5.16060 5.30204 5.33254 5.34964 5.40984 5.47302 5.47882 5.54133 5.58868 5.86980 6.04318 6.10725 6.20898 6.34637 6.73150 7.32020 8.83577 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.004874 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.827545 B = 5743.696448 C = 7050.417944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.235 3.765 3 H 0.043 0.957 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.035 3.965 7 N -0.932 5.932 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.247 1.247 11 H -0.281 1.281 12 N -0.992 5.992 13 C 0.098 3.902 14 S 2.793 3.207 15 O -1.001 7.001 16 O -1.017 7.017 17 N -1.121 6.121 18 C 0.121 3.879 19 C -0.078 4.078 20 H 0.087 0.913 21 C -0.108 4.108 22 C -0.106 4.106 23 C -0.104 4.104 24 C 0.047 3.953 25 N -0.533 5.533 26 C 0.023 3.977 27 C 0.058 3.942 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.265 0.735 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.416 0.584 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.015 0.985 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.704 -3.849 -9.348 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.061 0.939 4 C -0.544 4.544 5 H 0.078 0.922 6 C -0.165 4.165 7 N -0.571 5.571 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.171 1.171 11 H -0.207 1.207 12 N -0.834 5.834 13 C -0.047 4.047 14 S 2.803 3.197 15 O -0.985 6.985 16 O -1.001 7.001 17 N -0.884 5.884 18 C -0.005 4.005 19 C -0.098 4.098 20 H 0.105 0.895 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.082 4.082 25 N -0.257 5.257 26 C -0.125 4.125 27 C -0.070 4.070 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.034 0.966 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.553 -3.352 -10.459 15.941 hybrid contribution -0.173 0.877 2.059 2.245 sum 11.381 -2.476 -8.399 14.360 Atomic orbital electron populations 1.22143 0.96473 1.01854 0.99985 1.18929 0.92962 0.92118 0.82982 0.93868 1.21307 1.42766 0.95445 0.94917 0.92170 1.25491 0.94468 1.01185 0.95328 1.69985 1.47590 1.37212 1.02345 0.86490 0.80178 0.82971 0.78131 1.19667 1.17102 1.20663 1.57672 1.65294 1.22540 1.37866 1.21430 1.00865 0.80351 1.02097 1.01340 0.73046 0.72134 0.73220 1.93532 1.86442 1.76194 1.42295 1.93530 1.84667 1.34592 1.87357 1.55789 1.31052 1.16390 1.85141 1.21524 0.94464 0.82131 1.02385 1.20300 0.92487 0.99030 0.98011 0.89506 1.21373 0.96431 0.94534 1.02254 1.21141 0.93639 1.02099 0.97508 1.21915 0.98758 0.99196 0.94386 1.22047 0.98537 0.90225 0.97394 1.61653 1.10273 1.06919 1.46805 1.22526 1.02353 0.94606 0.93042 1.21052 0.88186 1.00312 0.97459 0.93091 0.93736 0.91785 0.92521 0.92141 0.90737 0.90959 0.74881 0.92042 0.89251 0.92192 0.90217 0.92227 0.91306 0.91580 0.91257 0.91297 0.95125 0.96593 0.89670 0.91404 0.92410 0.95560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.13 71.98 0.66 -5.13 16 2 C 0.24 10.43 2.18 44.24 0.10 10.53 16 3 H 0.04 2.05 4.16 -2.39 -0.01 2.04 16 4 C -0.50 -25.62 8.72 25.60 0.22 -25.40 16 5 H 0.06 3.28 6.83 -2.91 -0.02 3.26 16 6 C 0.04 1.88 5.47 84.65 0.46 2.34 16 7 N -0.93 -53.59 13.96 21.45 0.30 -53.29 16 8 Si 0.90 42.02 26.74 68.60 1.83 43.86 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.99 -38.00 3.12 -520.47 -1.62 -39.62 16 13 C 0.10 3.15 9.33 127.77 1.19 4.34 16 14 S 2.79 103.36 6.09 -56.49 -0.34 103.01 16 15 O -1.00 -37.96 16.68 -128.00 -2.14 -40.09 16 16 O -1.02 -43.88 16.70 -128.00 -2.14 -46.02 16 17 N -1.12 -34.71 5.89 -187.49 -1.11 -35.81 16 18 C 0.12 3.21 5.56 86.38 0.48 3.69 16 19 C -0.08 -1.80 2.06 -12.47 -0.03 -1.82 16 20 H 0.09 1.97 7.58 -2.39 -0.02 1.95 16 21 C -0.11 -2.06 4.95 30.29 0.15 -1.91 16 22 C -0.11 -1.82 5.42 30.21 0.16 -1.65 16 23 C -0.10 -1.74 6.14 31.39 0.19 -1.55 16 24 C 0.05 0.96 5.18 87.16 0.45 1.41 16 25 N -0.53 -12.35 4.48 -938.12 -4.21 -16.56 16 26 C 0.02 0.50 9.19 127.69 1.17 1.67 16 27 C 0.06 1.52 4.12 83.94 0.35 1.86 16 28 H 0.05 2.05 7.67 -2.38 -0.02 2.04 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 2.37 7.66 -2.39 -0.02 2.35 16 31 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.04 7.79 -2.39 -0.02 2.02 16 34 H 0.07 2.45 6.57 -2.39 -0.02 2.44 16 35 H 0.42 12.10 7.27 -96.74 -0.70 11.40 16 36 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 37 H 0.09 2.15 7.61 -2.39 -0.02 2.13 16 38 H 0.06 1.22 7.15 -2.39 -0.02 1.20 16 39 H 0.08 1.33 7.93 -2.38 -0.02 1.31 16 40 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.28 7.49 -2.39 -0.02 1.26 16 45 H 0.03 0.71 6.50 -2.39 -0.02 0.70 16 46 H 0.02 0.38 8.14 -2.38 -0.02 0.36 16 47 H 0.08 1.52 8.01 -2.39 -0.02 1.50 16 48 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 49 H 0.06 1.64 6.18 -2.39 -0.01 1.62 16 50 H 0.03 0.79 7.24 -2.39 -0.02 0.78 16 Total: -1.00 -64.25 386.25 -3.70 -67.94 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.16 Total: 28.20 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 5.56 Total: -11.62 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -6.64 Total: -145.28 kcal Atomic # 8 Polarization: -81.84 SS G_CDS: -4.27 Total: -86.11 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.83 Total: 43.86 kcal Atomic # 16 Polarization: 103.36 SS G_CDS: -0.34 Total: 103.01 kcal Total: -64.25 -3.70 -67.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.346 kcal (2) G-P(sol) polarization free energy of solvation -64.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds