Wall clock time and date at job start Tue Mar 31 2020 17:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46691 * 2 1 4 4 C 1.46495 * 119.99910 * 274.99547 * 3 2 1 5 5 C 1.50700 * 109.47094 * 280.12589 * 4 3 2 6 6 H 1.08004 * 120.00179 * 4.08713 * 5 4 3 7 7 C 1.37881 * 119.99722 * 184.09345 * 5 4 3 8 8 N 1.31512 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99732 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47190 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47343 * 119.99930 * 9 7 5 12 12 H 1.48495 * 109.47007 * 239.99799 * 9 7 5 13 13 S 1.65604 * 119.99960 * 94.99990 * 3 2 1 14 14 O 1.42102 * 106.40152 * 330.10817 * 13 3 2 15 15 O 1.42096 * 106.39959 * 197.18875 * 13 3 2 16 16 N 1.65603 * 107.21678 * 83.64817 * 13 3 2 17 17 C 1.46501 * 119.99718 * 65.49800 * 16 13 3 18 18 C 1.52998 * 109.46981 * 165.60418 * 17 16 13 19 19 H 1.08992 * 109.54495 * 55.17205 * 18 17 16 20 20 C 1.50750 * 109.54212 * 175.43795 * 18 17 16 21 21 C 1.54177 * 112.61630 * 212.87024 * 20 18 17 22 22 C 1.53819 * 111.96747 * 318.48755 * 21 20 18 23 23 C 1.50814 * 111.61594 * 319.03884 * 22 21 20 24 24 N 1.47633 * 108.03461 * 95.07213 * 23 22 21 25 25 C 1.46899 * 110.99705 * 150.30444 * 24 23 22 26 26 C 1.39773 * 114.76847 * 277.16788 * 24 23 22 27 27 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47411 * 299.99851 * 1 2 3 29 29 H 1.08996 * 109.47458 * 60.00712 * 1 2 3 30 30 H 1.08992 * 109.47146 * 239.99783 * 2 1 3 31 31 H 1.09001 * 109.46998 * 119.99298 * 2 1 3 32 32 H 1.09001 * 109.47091 * 40.12330 * 4 3 2 33 33 H 1.08998 * 109.47286 * 160.11957 * 4 3 2 34 34 H 0.97003 * 119.99568 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99664 * 245.49118 * 16 13 3 36 36 H 1.09000 * 109.46771 * 285.60191 * 17 16 13 37 37 H 1.09003 * 109.47248 * 45.60134 * 17 16 13 38 38 H 1.08991 * 108.85675 * 333.68104 * 20 18 17 39 39 H 1.09007 * 108.85350 * 92.06542 * 20 18 17 40 40 H 1.08997 * 108.98621 * 197.84547 * 21 20 18 41 41 H 1.09003 * 108.91008 * 79.07994 * 21 20 18 42 42 H 1.09002 * 109.04603 * 198.49208 * 22 21 20 43 43 H 1.08995 * 108.99581 * 79.55602 * 22 21 20 44 44 H 1.09000 * 109.75245 * 335.43362 * 23 22 21 45 45 H 1.09001 * 109.75108 * 214.70480 * 23 22 21 46 46 H 1.09006 * 109.47033 * 188.90658 * 25 24 23 47 47 H 1.08996 * 109.47487 * 308.90922 * 25 24 23 48 48 H 1.09006 * 109.47087 * 68.91114 * 25 24 23 49 49 H 1.08997 * 109.02803 * 301.68706 * 26 24 23 50 50 H 1.09004 * 108.96267 * 182.82137 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4375 1.6934 -1.9435 6 1 4.0489 0.9136 -1.5137 7 6 3.8277 2.3091 -3.1139 8 7 3.0831 3.2584 -3.6374 9 14 5.4139 1.7949 -3.9559 10 1 6.0634 0.7147 -3.1708 11 1 5.1109 1.3002 -5.3229 12 1 6.3287 2.9613 -4.0431 13 16 2.4121 2.1203 1.4287 14 8 1.5768 1.5428 2.4228 15 8 2.4514 3.5153 1.1613 16 7 3.9619 1.6717 1.8018 17 6 5.0730 2.0944 0.9456 18 6 6.3965 1.8690 1.6792 19 1 6.4662 0.8279 1.9940 20 6 7.5451 2.1977 0.7598 21 6 8.7828 1.3157 1.0186 22 6 9.0403 1.1122 2.5214 23 6 8.8201 2.3847 3.3001 24 7 7.4402 2.3667 3.8246 25 6 7.3465 3.1144 5.0855 26 6 6.4636 2.7889 2.9180 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.3118 1.8788 -1.9111 33 1 2.1833 3.1802 -1.0656 34 1 3.3579 3.6917 -4.4606 35 1 4.1340 1.1292 2.5872 36 1 5.0641 1.5114 0.0246 37 1 4.9655 3.1525 0.7068 38 1 7.2219 2.0573 -0.2716 39 1 7.8214 3.2427 0.9011 40 1 9.6560 1.7897 0.5703 41 1 8.6280 0.3436 0.5505 42 1 10.0689 0.7810 2.6644 43 1 8.3640 0.3440 2.8963 44 1 8.9539 3.2455 2.6449 45 1 9.5278 2.4374 4.1275 46 1 6.3642 2.9548 5.5305 47 1 8.1175 2.7661 5.7727 48 1 7.4880 4.1772 4.8891 49 1 6.6940 3.8040 2.5947 50 1 5.4937 2.7863 3.4155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599415790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:20 Heat of formation + Delta-G solvation = -84.379777 kcal Electronic energy + Delta-G solvation = -29310.881730 eV Core-core repulsion = 25499.357539 eV Total energy + Delta-G solvation = -3811.524191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.67577 -36.61137 -36.03102 -35.61376 -35.14420 -34.28449 -32.70998 -31.58747 -29.89892 -27.85957 -26.65855 -26.24002 -24.75087 -23.14330 -22.69335 -21.65039 -20.60642 -19.52126 -18.54071 -17.05783 -16.84182 -16.47436 -15.98212 -15.68863 -15.59793 -15.18181 -14.84134 -14.65635 -14.26528 -13.79099 -13.74358 -13.31018 -13.12640 -13.00240 -12.86929 -12.44908 -12.32830 -12.05128 -12.03344 -11.97892 -11.67745 -11.61894 -11.48064 -11.29291 -11.25106 -11.07661 -11.00578 -10.93222 -10.84692 -10.52129 -10.46538 -10.33429 -10.27827 -10.21309 -9.99935 -9.76983 -8.89534 -8.51069 -8.27404 -8.02810 -6.12046 -4.18318 1.36531 3.21659 3.30565 3.31648 3.60661 3.86656 4.23042 4.34074 4.71774 4.75839 4.92937 4.98741 5.09929 5.17215 5.21859 5.27222 5.29457 5.39516 5.43995 5.49317 5.52736 5.69936 5.74592 5.77372 5.79926 5.83408 5.87433 5.89024 5.92706 6.03941 6.12198 6.20639 6.25676 6.31943 6.34110 6.37155 6.49448 6.62503 6.70946 6.76083 7.04621 7.32633 7.36187 7.41564 7.49618 7.71955 7.85870 8.16086 8.86322 9.47130 10.95955 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.005247 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.187969 B = 5335.280526 C = 7323.891886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.785 3.215 14 O -1.002 7.002 15 O -0.980 6.980 16 N -1.130 6.130 17 C 0.125 3.875 18 C -0.087 4.087 19 H 0.086 0.914 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.118 4.118 23 C 0.064 3.936 24 N -0.558 5.558 25 C 0.030 3.970 26 C 0.074 3.926 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.263 0.737 35 H 0.407 0.593 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.023 0.977 49 H 0.022 0.978 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -4.589 11.978 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.793 3.207 14 O -0.987 6.987 15 O -0.964 6.964 16 N -0.889 5.889 17 C -0.002 4.002 18 C -0.107 4.107 19 H 0.104 0.896 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.063 4.063 24 N -0.282 5.282 25 C -0.118 4.118 26 C -0.055 4.055 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.469 -4.183 12.221 15.446 hybrid contribution 1.379 0.133 -0.772 1.586 sum 9.849 -4.050 11.449 15.636 Atomic orbital electron populations 1.22213 0.97022 1.01288 1.02461 1.20935 0.93597 0.82925 1.01953 1.57716 1.78668 1.22903 1.24079 1.19211 0.97198 0.92576 0.78966 1.21564 1.07234 1.20622 1.08182 0.91723 1.24945 0.97001 0.94780 0.97061 1.69944 1.37845 1.24355 1.20400 0.86611 0.83602 0.78576 0.79684 1.19508 1.20993 1.20860 1.01728 0.72658 0.73723 0.72617 1.93545 1.65645 1.79793 1.59672 1.93572 1.86595 1.31004 1.85191 1.55989 1.25169 1.69798 1.37928 1.21500 0.84053 1.01512 0.93113 1.21227 0.94200 1.00861 0.94428 0.89600 1.21450 0.94339 0.99726 1.00374 1.21905 0.97468 1.00120 0.95909 1.21412 1.01143 0.98220 0.94803 1.21833 0.88567 0.97911 0.97978 1.58861 1.04789 1.58524 1.06062 1.22351 1.02545 0.95496 0.91382 1.21062 0.95278 0.95974 0.93187 0.92489 0.92500 0.92131 0.90208 0.92213 0.94860 0.92656 0.92664 0.76107 0.89297 0.90490 0.90946 0.92300 0.92447 0.92014 0.92276 0.90580 0.93880 0.91360 0.91449 0.91637 0.95832 0.95993 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.28 6.02 -4.04 -0.02 2.26 16 3 N -0.99 -20.07 2.84 -115.66 -0.33 -20.40 16 4 C 0.24 5.88 5.46 -5.20 -0.03 5.85 16 5 C -0.54 -13.40 8.51 -34.44 -0.29 -13.69 16 6 H 0.06 1.54 6.47 -52.48 -0.34 1.20 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 9 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 S 2.78 54.71 6.07 -107.50 -0.65 54.05 16 14 O -1.00 -20.42 17.17 -57.17 -0.98 -21.40 16 15 O -0.98 -22.80 16.01 -57.17 -0.92 -23.71 16 16 N -1.13 -17.98 5.36 -10.61 -0.06 -18.04 16 17 C 0.12 2.03 5.43 -4.04 -0.02 2.01 16 18 C -0.09 -1.15 1.93 -90.99 -0.18 -1.33 16 19 H 0.09 1.10 7.11 -51.93 -0.37 0.73 16 20 C -0.12 -1.55 4.87 -27.24 -0.13 -1.68 16 21 C -0.12 -1.26 5.92 -25.69 -0.15 -1.41 16 22 C -0.12 -1.15 5.41 -27.40 -0.15 -1.30 16 23 C 0.06 0.64 5.37 -4.52 -0.02 0.62 16 24 N -0.56 -6.26 4.19 -248.32 -1.04 -7.30 16 25 C 0.03 0.29 9.46 60.06 0.57 0.86 16 26 C 0.07 0.95 4.29 -6.74 -0.03 0.92 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.95 7.97 -51.93 -0.41 0.53 16 29 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 31 H 0.06 0.91 7.78 -51.93 -0.40 0.51 16 32 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.06 1.50 6.77 -51.93 -0.35 1.15 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.41 5.43 8.47 -34.47 -0.29 5.14 16 36 H 0.09 1.59 5.70 -51.93 -0.30 1.29 16 37 H 0.08 1.40 7.75 -51.93 -0.40 1.00 16 38 H 0.07 1.03 7.61 -51.93 -0.40 0.64 16 39 H 0.06 0.75 6.58 -51.92 -0.34 0.41 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.81 7.26 -51.93 -0.38 0.44 16 44 H 0.04 0.46 6.66 -51.93 -0.35 0.11 16 45 H 0.07 0.59 7.62 -51.93 -0.40 0.19 16 46 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 47 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 48 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.02 0.30 7.55 -51.93 -0.39 -0.09 16 50 H 0.07 1.00 7.03 -51.93 -0.36 0.63 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -30.35 391.67 -11.35 -41.70 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.82 Total: 6.00 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.18 Total: -7.62 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -0.69 Total: -69.86 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.90 Total: -45.11 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 54.71 SS G_CDS: -0.65 Total: 54.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.35 -11.35 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.675 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds