Wall clock time and date at job start Tue Mar 31 2020 17:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46691 * 2 1 4 4 C 1.46495 * 119.99910 * 274.99547 * 3 2 1 5 5 C 1.50700 * 109.47094 * 280.12589 * 4 3 2 6 6 H 1.08004 * 120.00179 * 4.08713 * 5 4 3 7 7 C 1.37881 * 119.99722 * 184.09345 * 5 4 3 8 8 N 1.31512 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99732 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47190 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47343 * 119.99930 * 9 7 5 12 12 H 1.48495 * 109.47007 * 239.99799 * 9 7 5 13 13 S 1.65604 * 119.99960 * 94.99990 * 3 2 1 14 14 O 1.42102 * 106.40152 * 330.10817 * 13 3 2 15 15 O 1.42096 * 106.39959 * 197.18875 * 13 3 2 16 16 N 1.65603 * 107.21678 * 83.64817 * 13 3 2 17 17 C 1.46501 * 119.99718 * 65.49800 * 16 13 3 18 18 C 1.52998 * 109.46981 * 165.60418 * 17 16 13 19 19 H 1.08992 * 109.54495 * 55.17205 * 18 17 16 20 20 C 1.50750 * 109.54212 * 175.43795 * 18 17 16 21 21 C 1.54177 * 112.61630 * 212.87024 * 20 18 17 22 22 C 1.53819 * 111.96747 * 318.48755 * 21 20 18 23 23 C 1.50814 * 111.61594 * 319.03884 * 22 21 20 24 24 N 1.47633 * 108.03461 * 95.07213 * 23 22 21 25 25 C 1.46899 * 110.99705 * 150.30444 * 24 23 22 26 26 C 1.39773 * 114.76847 * 277.16788 * 24 23 22 27 27 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47411 * 299.99851 * 1 2 3 29 29 H 1.08996 * 109.47458 * 60.00712 * 1 2 3 30 30 H 1.08992 * 109.47146 * 239.99783 * 2 1 3 31 31 H 1.09001 * 109.46998 * 119.99298 * 2 1 3 32 32 H 1.09001 * 109.47091 * 40.12330 * 4 3 2 33 33 H 1.08998 * 109.47286 * 160.11957 * 4 3 2 34 34 H 0.97003 * 119.99568 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99664 * 245.49118 * 16 13 3 36 36 H 1.09000 * 109.46771 * 285.60191 * 17 16 13 37 37 H 1.09003 * 109.47248 * 45.60134 * 17 16 13 38 38 H 1.08991 * 108.85675 * 333.68104 * 20 18 17 39 39 H 1.09007 * 108.85350 * 92.06542 * 20 18 17 40 40 H 1.08997 * 108.98621 * 197.84547 * 21 20 18 41 41 H 1.09003 * 108.91008 * 79.07994 * 21 20 18 42 42 H 1.09002 * 109.04603 * 198.49208 * 22 21 20 43 43 H 1.08995 * 108.99581 * 79.55602 * 22 21 20 44 44 H 1.09000 * 109.75245 * 335.43362 * 23 22 21 45 45 H 1.09001 * 109.75108 * 214.70480 * 23 22 21 46 46 H 1.09006 * 109.47033 * 188.90658 * 25 24 23 47 47 H 1.08996 * 109.47487 * 308.90922 * 25 24 23 48 48 H 1.09006 * 109.47087 * 68.91114 * 25 24 23 49 49 H 1.08997 * 109.02803 * 301.68706 * 26 24 23 50 50 H 1.09004 * 108.96267 * 182.82137 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4375 1.6934 -1.9435 6 1 4.0489 0.9136 -1.5137 7 6 3.8277 2.3091 -3.1139 8 7 3.0831 3.2584 -3.6374 9 14 5.4139 1.7949 -3.9559 10 1 6.0634 0.7147 -3.1708 11 1 5.1109 1.3002 -5.3229 12 1 6.3287 2.9613 -4.0431 13 16 2.4121 2.1203 1.4287 14 8 1.5768 1.5428 2.4228 15 8 2.4514 3.5153 1.1613 16 7 3.9619 1.6717 1.8018 17 6 5.0730 2.0944 0.9456 18 6 6.3965 1.8690 1.6792 19 1 6.4662 0.8279 1.9940 20 6 7.5451 2.1977 0.7598 21 6 8.7828 1.3157 1.0186 22 6 9.0403 1.1122 2.5214 23 6 8.8201 2.3847 3.3001 24 7 7.4402 2.3667 3.8246 25 6 7.3465 3.1144 5.0855 26 6 6.4636 2.7889 2.9180 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.3118 1.8788 -1.9111 33 1 2.1833 3.1802 -1.0656 34 1 3.3579 3.6917 -4.4606 35 1 4.1340 1.1292 2.5872 36 1 5.0641 1.5114 0.0246 37 1 4.9655 3.1525 0.7068 38 1 7.2219 2.0573 -0.2716 39 1 7.8214 3.2427 0.9011 40 1 9.6560 1.7897 0.5703 41 1 8.6280 0.3436 0.5505 42 1 10.0689 0.7810 2.6644 43 1 8.3640 0.3440 2.8963 44 1 8.9539 3.2455 2.6449 45 1 9.5278 2.4374 4.1275 46 1 6.3642 2.9548 5.5305 47 1 8.1175 2.7661 5.7727 48 1 7.4880 4.1772 4.8891 49 1 6.6940 3.8040 2.5947 50 1 5.4937 2.7863 3.4155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599415790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:19 Heat of formation + Delta-G solvation = -105.760411 kcal Electronic energy + Delta-G solvation = -29311.808864 eV Core-core repulsion = 25499.357539 eV Total energy + Delta-G solvation = -3812.451325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63224 -38.29727 -37.66803 -36.86705 -36.82047 -35.23745 -34.64868 -32.68353 -31.49092 -28.71845 -28.48627 -27.36022 -25.68559 -24.92397 -23.75393 -23.23129 -21.59631 -20.65967 -19.93271 -18.63279 -18.55901 -18.24065 -17.37616 -16.90098 -16.65817 -16.56614 -16.11167 -15.77654 -15.61322 -15.27150 -14.80235 -14.68268 -14.56101 -14.32803 -14.09892 -13.76103 -13.62487 -13.46074 -13.30112 -13.23744 -13.14728 -13.00357 -12.98813 -12.85193 -12.72153 -12.64143 -12.41018 -12.26510 -12.08841 -11.89488 -11.75316 -11.68781 -11.54400 -11.44369 -11.24618 -11.15930 -10.55924 -10.32663 -9.75483 -9.16086 -8.13209 -6.25943 -0.25362 1.43599 1.46067 1.56489 2.04241 2.44852 2.64534 2.99932 3.19504 3.47944 3.73166 3.85745 3.88512 4.01112 4.15497 4.22017 4.33524 4.39758 4.46662 4.48732 4.52694 4.57641 4.61511 4.67791 4.72770 4.77950 4.81571 4.87883 4.94346 5.01478 5.02967 5.05191 5.12941 5.18517 5.22361 5.29571 5.31524 5.36359 5.44291 5.49751 5.55966 5.56765 5.81518 5.93948 6.15305 6.21814 6.26321 6.43787 6.86410 7.43736 8.95464 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.005247 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.187969 B = 5335.280526 C = 7323.891886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.951 3.049 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.284 1.284 13 S 2.798 3.202 14 O -1.006 7.006 15 O -1.020 7.020 16 N -1.111 6.111 17 C 0.128 3.872 18 C -0.076 4.076 19 H 0.098 0.902 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.113 4.113 23 C 0.062 3.938 24 N -0.563 5.563 25 C 0.028 3.972 26 C 0.081 3.919 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.016 0.984 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.422 0.578 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.020 0.980 49 H 0.008 0.992 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 -6.782 13.286 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.134 3.866 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.776 3.224 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.210 1.210 13 S 2.806 3.194 14 O -0.990 6.990 15 O -1.003 7.003 16 N -0.874 5.874 17 C 0.002 3.998 18 C -0.096 4.096 19 H 0.116 0.884 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.065 4.065 24 N -0.287 5.287 25 C -0.119 4.119 26 C -0.049 4.049 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.039 0.961 49 H 0.026 0.974 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.611 -6.413 13.569 18.381 hybrid contribution 0.673 0.814 -1.109 1.531 sum 11.283 -5.600 12.461 17.718 Atomic orbital electron populations 1.22199 0.96095 1.03166 1.01297 1.21237 0.94512 0.81228 1.03310 1.57614 1.79360 1.24091 1.22604 1.18752 0.96573 0.91054 0.80218 1.21835 1.07180 1.20262 1.07820 0.90384 1.25778 1.00183 0.94785 0.97968 1.70085 1.39932 1.25956 1.21034 0.85611 0.79705 0.78575 0.78537 1.17392 1.21073 1.21022 1.01156 0.73200 0.72800 0.72224 1.93531 1.66380 1.79586 1.59541 1.93525 1.87333 1.33780 1.85693 1.55572 1.23712 1.69747 1.38387 1.21432 0.85580 0.99618 0.93204 1.21131 0.92431 1.01614 0.94455 0.88419 1.21464 0.95155 1.00228 0.99198 1.21889 0.96475 0.99662 0.97019 1.21381 1.02217 0.97797 0.93671 1.21926 0.88148 0.97760 0.98646 1.58889 1.05085 1.58585 1.06133 1.22420 1.03300 0.95285 0.90922 1.20933 0.95700 0.95131 0.93180 0.89106 0.93426 0.93513 0.89984 0.89623 0.96639 0.96221 0.92767 0.74199 0.90611 0.93066 0.92599 0.92674 0.91508 0.91809 0.90264 0.91179 0.94672 0.89418 0.91513 0.89689 0.96092 0.97379 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.18 10.24 71.98 0.74 -4.45 16 2 C 0.12 4.06 6.02 86.38 0.52 4.58 16 3 N -1.00 -40.54 2.84 -519.85 -1.48 -42.02 16 4 C 0.26 12.91 5.46 85.63 0.47 13.38 16 5 C -0.53 -26.79 8.51 25.60 0.22 -26.57 16 6 H 0.08 3.65 6.47 -2.91 -0.02 3.63 16 7 C 0.01 0.64 5.46 84.66 0.46 1.10 16 8 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 9 Si 0.95 40.87 29.54 68.60 2.03 42.90 16 10 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 S 2.80 110.57 6.07 -56.49 -0.34 110.23 16 14 O -1.01 -40.14 17.17 -128.00 -2.20 -42.34 16 15 O -1.02 -49.16 16.01 -128.00 -2.05 -51.21 16 16 N -1.11 -34.72 5.36 -187.49 -1.01 -35.73 16 17 C 0.13 4.18 5.43 86.38 0.47 4.65 16 18 C -0.08 -1.94 1.93 -11.03 -0.02 -1.96 16 19 H 0.10 2.29 7.11 -2.39 -0.02 2.28 16 20 C -0.12 -3.02 4.87 30.26 0.15 -2.87 16 21 C -0.11 -2.16 5.92 31.27 0.18 -1.98 16 22 C -0.11 -1.86 5.41 30.16 0.16 -1.70 16 23 C 0.06 1.07 5.37 85.45 0.46 1.53 16 24 N -0.56 -11.49 4.19 -939.53 -3.94 -15.42 16 25 C 0.03 0.48 9.46 127.69 1.21 1.69 16 26 C 0.08 1.99 4.29 88.08 0.38 2.37 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.54 7.97 -2.39 -0.02 1.52 16 29 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 30 H 0.08 2.69 8.09 -2.39 -0.02 2.67 16 31 H 0.09 2.40 7.78 -2.39 -0.02 2.38 16 32 H 0.02 0.82 8.10 -2.39 -0.02 0.80 16 33 H 0.02 1.13 6.77 -2.39 -0.02 1.11 16 34 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.42 10.58 8.47 -96.75 -0.82 9.77 16 36 H 0.08 2.69 5.70 -2.39 -0.01 2.67 16 37 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 38 H 0.06 1.56 7.61 -2.39 -0.02 1.54 16 39 H 0.05 1.38 6.58 -2.38 -0.02 1.37 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.27 7.26 -2.39 -0.02 1.26 16 44 H 0.03 0.68 6.66 -2.39 -0.02 0.66 16 45 H 0.09 1.21 7.62 -2.39 -0.02 1.19 16 46 H 0.07 1.15 8.04 -2.38 -0.02 1.13 16 47 H 0.08 1.13 7.83 -2.39 -0.02 1.11 16 48 H 0.02 0.37 8.14 -2.38 -0.02 0.35 16 49 H 0.01 0.22 7.55 -2.39 -0.02 0.21 16 50 H 0.07 1.76 7.03 -2.38 -0.02 1.74 16 Total: -1.00 -66.19 391.67 -3.21 -69.39 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.10 Total: 27.74 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.39 Total: -10.22 kcal Atomic # 7 Polarization: -140.36 SS G_CDS: -6.13 Total: -146.49 kcal Atomic # 8 Polarization: -89.30 SS G_CDS: -4.25 Total: -93.55 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 110.57 SS G_CDS: -0.34 Total: 110.23 kcal Total: -66.19 -3.21 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.369 kcal (2) G-P(sol) polarization free energy of solvation -66.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds