Wall clock time and date at job start Tue Mar 31 2020 17:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46502 * 120.00701 * 275.00443 * 3 2 1 5 5 C 1.50696 * 109.47077 * 84.99501 * 4 3 2 6 6 H 1.08002 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47306 * 60.00244 * 9 7 5 11 11 H 1.48503 * 109.47304 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47388 * 300.00186 * 9 7 5 13 13 S 1.65603 * 119.99810 * 94.99963 * 3 2 1 14 14 O 1.42104 * 106.40314 * 203.53927 * 13 3 2 15 15 O 1.42100 * 106.40521 * 336.46437 * 13 3 2 16 16 N 1.65606 * 107.21868 * 90.00234 * 13 3 2 17 17 C 1.46497 * 119.99623 * 64.99988 * 16 13 3 18 18 C 1.53005 * 109.46878 * 165.00350 * 17 16 13 19 19 H 1.08997 * 109.04171 * 306.00687 * 18 17 16 20 20 C 1.54505 * 109.05481 * 187.08557 * 18 17 16 21 21 C 1.50468 * 108.85283 * 162.26807 * 20 18 17 22 22 C 1.54283 * 113.03837 * 92.15276 * 21 20 18 23 23 C 1.54068 * 112.28776 * 318.30491 * 22 21 20 24 24 N 1.44272 * 111.97761 * 318.91417 * 23 22 21 25 25 C 1.46905 * 110.99969 * 219.31451 * 24 23 22 26 26 C 1.45860 * 109.05956 * 64.99908 * 18 17 16 27 27 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 32 32 H 1.08997 * 109.47560 * 204.99781 * 4 3 2 33 33 H 1.09000 * 109.46547 * 324.99874 * 4 3 2 34 34 H 0.96996 * 120.00037 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00070 * 245.00010 * 16 13 3 36 36 H 1.08998 * 109.47632 * 284.99745 * 17 16 13 37 37 H 1.09004 * 109.47542 * 45.00373 * 17 16 13 38 38 H 1.09002 * 109.57514 * 282.07231 * 20 18 17 39 39 H 1.08992 * 109.57749 * 42.45604 * 20 18 17 40 40 H 1.09007 * 108.76667 * 331.23457 * 21 20 18 41 41 H 1.09005 * 108.67828 * 213.00885 * 21 20 18 42 42 H 1.09007 * 108.91840 * 197.58051 * 22 21 20 43 43 H 1.09003 * 108.84522 * 78.97703 * 22 21 20 44 44 H 1.08997 * 108.97888 * 198.27438 * 23 22 21 45 45 H 1.08992 * 108.91575 * 79.51400 * 23 22 21 46 46 H 1.09006 * 109.46955 * 298.01455 * 25 24 23 47 47 H 1.08998 * 109.47235 * 58.01111 * 25 24 23 48 48 H 1.08996 * 109.47142 * 178.01816 * 25 24 23 49 49 H 1.09003 * 108.79230 * 302.75696 * 26 18 17 50 50 H 1.09001 * 108.79272 * 61.08958 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 0.8360 2.7289 -1.6354 6 1 -0.0226 2.5948 -0.9941 7 6 0.7223 3.4675 -2.7942 8 7 1.7677 3.6304 -3.5754 9 14 -0.9168 4.2356 -3.2552 10 1 -1.3405 5.1763 -2.1872 11 1 -0.7753 4.9722 -4.5369 12 1 -1.9380 3.1683 -3.4084 13 16 2.4122 2.1201 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4414 2.4449 16 7 4.0144 1.8136 1.7138 17 6 5.0350 2.3525 0.8114 18 6 6.4085 2.2549 1.4787 19 1 6.3652 2.7397 2.4540 20 6 7.4491 2.9845 0.6000 21 6 8.6712 3.2704 1.4298 22 6 9.7372 2.1589 1.3376 23 6 9.1165 0.7493 1.3760 24 7 8.0484 0.6558 2.3413 25 6 8.0868 -0.6328 3.0457 26 6 6.7509 0.8488 1.6605 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.9079 2.8920 -1.1512 33 1 2.4689 1.4184 -2.0480 34 1 1.6878 4.1503 -4.3903 35 1 4.2771 1.2774 2.4781 36 1 5.0400 1.7789 -0.1154 37 1 4.8112 3.3964 0.5916 38 1 7.7213 2.3520 -0.2450 39 1 7.0273 3.9214 0.2362 40 1 8.3697 3.3817 2.4714 41 1 9.1119 4.2080 1.0908 42 1 10.4296 2.2630 2.1731 43 1 10.2891 2.2768 0.4050 44 1 9.8915 0.0276 1.6338 45 1 8.7235 0.5093 0.3881 46 1 7.9438 -1.4425 2.3300 47 1 9.0524 -0.7493 3.5378 48 1 7.2928 -0.6628 3.7918 49 1 5.9697 0.3707 2.2515 50 1 6.7942 0.3687 0.6829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599415791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:23 Heat of formation + Delta-G solvation = -80.841675 kcal Electronic energy + Delta-G solvation = -28792.011397 eV Core-core repulsion = 24980.640629 eV Total energy + Delta-G solvation = -3811.370768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.75632 -36.62098 -36.08224 -35.88888 -35.09859 -34.24116 -32.57737 -31.85430 -29.80019 -28.11711 -26.73665 -26.25219 -25.01998 -22.97544 -22.68850 -21.85070 -20.40473 -19.83125 -18.81765 -17.20862 -16.80093 -16.40232 -16.25689 -15.99242 -15.56458 -15.03927 -14.72302 -14.64119 -14.23182 -13.88072 -13.72479 -13.44613 -13.10372 -13.03567 -12.95592 -12.83007 -12.55784 -12.21534 -11.99221 -11.85973 -11.73038 -11.55159 -11.46181 -11.32396 -11.19160 -11.02993 -10.97281 -10.96221 -10.90018 -10.59215 -10.53738 -10.43577 -10.37726 -10.28562 -9.90041 -9.60976 -9.21513 -8.54384 -8.41555 -8.07875 -6.04723 -4.07401 1.27220 3.34635 3.38238 3.43058 3.58170 3.66701 4.17512 4.46248 4.55258 4.65833 4.83920 4.92827 4.94364 5.09314 5.12592 5.14331 5.17328 5.27987 5.29848 5.43201 5.50074 5.53639 5.62767 5.63726 5.66038 5.71114 5.78004 5.85429 5.86248 5.92348 6.03671 6.09842 6.11242 6.17516 6.28740 6.33125 6.39352 6.43377 6.71415 6.84847 6.94793 6.99875 7.14229 7.27914 7.43396 7.66167 7.93346 8.23258 8.94258 9.57210 11.03963 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.003520 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.407044 B = 7953.153442 C = 8913.428417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.137 3.863 3 N -0.993 5.993 4 C 0.258 3.742 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 S 2.780 3.220 14 O -0.964 6.964 15 O -0.999 6.999 16 N -1.137 6.137 17 C 0.124 3.876 18 C -0.089 4.089 19 H 0.084 0.916 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.109 4.109 23 C 0.052 3.948 24 N -0.535 5.535 25 C 0.026 3.974 26 C 0.058 3.942 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.025 0.975 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.114 -8.163 9.320 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.836 5.836 4 C 0.136 3.864 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.788 3.212 14 O -0.947 6.947 15 O -0.983 6.983 16 N -0.896 5.896 17 C -0.003 4.003 18 C -0.109 4.109 19 H 0.103 0.897 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.077 4.077 24 N -0.258 5.258 25 C -0.122 4.122 26 C -0.069 4.069 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.615 -7.074 9.883 19.008 hybrid contribution -0.610 -0.700 -0.904 1.296 sum 14.005 -7.774 8.979 18.363 Atomic orbital electron populations 1.22262 0.96424 1.00793 1.03678 1.20921 0.94800 0.82291 1.00938 1.57759 1.78489 1.22961 1.24370 1.19052 0.97540 0.90856 0.78994 1.21488 0.96370 1.31859 1.06721 0.91986 1.24912 0.96793 0.96010 0.96238 1.69900 1.29305 1.40714 1.13674 0.86623 0.83954 0.79566 0.77704 1.20028 1.21241 1.20233 1.02005 0.72568 0.73936 0.72734 1.93622 1.85293 1.30507 1.85317 1.93541 1.70219 1.76326 1.58190 1.56291 1.25947 1.68801 1.38542 1.21363 0.86810 1.00055 0.92095 1.20377 0.93715 0.96317 1.00478 0.89727 1.21378 0.94980 1.00731 0.97926 1.21173 0.95189 0.97316 1.01006 1.21933 0.97677 0.93975 1.01096 1.21956 0.93991 0.97475 0.94253 1.61541 1.03018 1.32368 1.28881 1.22465 1.02602 0.89133 0.98039 1.21104 0.90954 0.97244 0.97607 0.92836 0.93153 0.90277 0.92267 0.91212 0.94518 0.94867 0.92723 0.76103 0.91612 0.89727 0.91803 0.91034 0.91477 0.92726 0.92242 0.92311 0.92175 0.93943 0.95679 0.91477 0.91273 0.91316 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.83 37.16 0.37 -2.70 16 2 C 0.14 2.36 6.09 -4.04 -0.02 2.34 16 3 N -0.99 -20.07 2.86 -115.67 -0.33 -20.40 16 4 C 0.26 6.23 5.12 -5.19 -0.03 6.20 16 5 C -0.52 -14.37 8.41 -34.44 -0.29 -14.66 16 6 H 0.06 1.70 6.89 -52.49 -0.36 1.34 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 S 2.78 54.54 6.05 -107.50 -0.65 53.89 16 14 O -0.96 -23.02 16.58 -57.17 -0.95 -23.96 16 15 O -1.00 -20.68 17.11 -57.17 -0.98 -21.66 16 16 N -1.14 -16.50 5.89 -10.61 -0.06 -16.56 16 17 C 0.12 1.70 5.56 -4.04 -0.02 1.68 16 18 C -0.09 -0.98 2.06 -93.21 -0.19 -1.17 16 19 H 0.08 0.97 7.58 -51.93 -0.39 0.58 16 20 C -0.11 -1.16 4.95 -27.21 -0.13 -1.30 16 21 C -0.11 -1.02 5.42 -27.32 -0.15 -1.17 16 22 C -0.11 -0.91 6.14 -25.50 -0.16 -1.07 16 23 C 0.05 0.45 5.18 -4.67 -0.02 0.43 16 24 N -0.53 -5.06 4.48 -247.88 -1.11 -6.17 16 25 C 0.03 0.20 9.19 60.07 0.55 0.76 16 26 C 0.06 0.59 4.12 -6.71 -0.03 0.57 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 30 H 0.06 0.89 7.61 -51.93 -0.40 0.49 16 31 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 32 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 33 H 0.03 0.82 8.00 -51.93 -0.42 0.40 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.41 4.89 7.27 -34.47 -0.25 4.64 16 36 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.08 1.31 7.61 -51.93 -0.40 0.91 16 38 H 0.06 0.65 7.15 -51.93 -0.37 0.28 16 39 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 40 H 0.07 0.68 7.38 -51.93 -0.38 0.30 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.46 7.49 -51.93 -0.39 0.07 16 45 H 0.04 0.39 6.50 -51.93 -0.34 0.05 16 46 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.07 0.47 8.01 -51.93 -0.42 0.05 16 48 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 49 H 0.07 0.68 6.18 -51.93 -0.32 0.36 16 50 H 0.04 0.44 7.23 -51.93 -0.38 0.06 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -32.43 393.04 -11.55 -43.98 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.88 Total: 1.68 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.23 Total: -8.45 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.77 Total: -68.07 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.93 Total: -45.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 54.54 SS G_CDS: -0.65 Total: 53.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.43 -11.55 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.859 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds