Wall clock time and date at job start Tue Mar 31 2020 17:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46502 * 120.00701 * 275.00443 * 3 2 1 5 5 C 1.50696 * 109.47077 * 84.99501 * 4 3 2 6 6 H 1.08002 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47306 * 60.00244 * 9 7 5 11 11 H 1.48503 * 109.47304 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47388 * 300.00186 * 9 7 5 13 13 S 1.65603 * 119.99810 * 94.99963 * 3 2 1 14 14 O 1.42104 * 106.40314 * 203.53927 * 13 3 2 15 15 O 1.42100 * 106.40521 * 336.46437 * 13 3 2 16 16 N 1.65606 * 107.21868 * 90.00234 * 13 3 2 17 17 C 1.46497 * 119.99623 * 64.99988 * 16 13 3 18 18 C 1.53005 * 109.46878 * 165.00350 * 17 16 13 19 19 H 1.08997 * 109.04171 * 306.00687 * 18 17 16 20 20 C 1.54505 * 109.05481 * 187.08557 * 18 17 16 21 21 C 1.50468 * 108.85283 * 162.26807 * 20 18 17 22 22 C 1.54283 * 113.03837 * 92.15276 * 21 20 18 23 23 C 1.54068 * 112.28776 * 318.30491 * 22 21 20 24 24 N 1.44272 * 111.97761 * 318.91417 * 23 22 21 25 25 C 1.46905 * 110.99969 * 219.31451 * 24 23 22 26 26 C 1.45860 * 109.05956 * 64.99908 * 18 17 16 27 27 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 32 32 H 1.08997 * 109.47560 * 204.99781 * 4 3 2 33 33 H 1.09000 * 109.46547 * 324.99874 * 4 3 2 34 34 H 0.96996 * 120.00037 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00070 * 245.00010 * 16 13 3 36 36 H 1.08998 * 109.47632 * 284.99745 * 17 16 13 37 37 H 1.09004 * 109.47542 * 45.00373 * 17 16 13 38 38 H 1.09002 * 109.57514 * 282.07231 * 20 18 17 39 39 H 1.08992 * 109.57749 * 42.45604 * 20 18 17 40 40 H 1.09007 * 108.76667 * 331.23457 * 21 20 18 41 41 H 1.09005 * 108.67828 * 213.00885 * 21 20 18 42 42 H 1.09007 * 108.91840 * 197.58051 * 22 21 20 43 43 H 1.09003 * 108.84522 * 78.97703 * 22 21 20 44 44 H 1.08997 * 108.97888 * 198.27438 * 23 22 21 45 45 H 1.08992 * 108.91575 * 79.51400 * 23 22 21 46 46 H 1.09006 * 109.46955 * 298.01455 * 25 24 23 47 47 H 1.08998 * 109.47235 * 58.01111 * 25 24 23 48 48 H 1.08996 * 109.47142 * 178.01816 * 25 24 23 49 49 H 1.09003 * 108.79230 * 302.75696 * 26 18 17 50 50 H 1.09001 * 108.79272 * 61.08958 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 0.8360 2.7289 -1.6354 6 1 -0.0226 2.5948 -0.9941 7 6 0.7223 3.4675 -2.7942 8 7 1.7677 3.6304 -3.5754 9 14 -0.9168 4.2356 -3.2552 10 1 -1.3405 5.1763 -2.1872 11 1 -0.7753 4.9722 -4.5369 12 1 -1.9380 3.1683 -3.4084 13 16 2.4122 2.1201 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4414 2.4449 16 7 4.0144 1.8136 1.7138 17 6 5.0350 2.3525 0.8114 18 6 6.4085 2.2549 1.4787 19 1 6.3652 2.7397 2.4540 20 6 7.4491 2.9845 0.6000 21 6 8.6712 3.2704 1.4298 22 6 9.7372 2.1589 1.3376 23 6 9.1165 0.7493 1.3760 24 7 8.0484 0.6558 2.3413 25 6 8.0868 -0.6328 3.0457 26 6 6.7509 0.8488 1.6605 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.9079 2.8920 -1.1512 33 1 2.4689 1.4184 -2.0480 34 1 1.6878 4.1503 -4.3903 35 1 4.2771 1.2774 2.4781 36 1 5.0400 1.7789 -0.1154 37 1 4.8112 3.3964 0.5916 38 1 7.7213 2.3520 -0.2450 39 1 7.0273 3.9214 0.2362 40 1 8.3697 3.3817 2.4714 41 1 9.1119 4.2080 1.0908 42 1 10.4296 2.2630 2.1731 43 1 10.2891 2.2768 0.4050 44 1 9.8915 0.0276 1.6338 45 1 8.7235 0.5093 0.3881 46 1 7.9438 -1.4425 2.3300 47 1 9.0524 -0.7493 3.5378 48 1 7.2928 -0.6628 3.7918 49 1 5.9697 0.3707 2.2515 50 1 6.7942 0.3687 0.6829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599415791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:22 Heat of formation + Delta-G solvation = -104.279689 kcal Electronic energy + Delta-G solvation = -28793.027746 eV Core-core repulsion = 24980.640629 eV Total energy + Delta-G solvation = -3812.387116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.57355 -38.28209 -37.69569 -36.96934 -36.81461 -35.05511 -34.61839 -32.82939 -31.42171 -28.83416 -28.64923 -27.23267 -25.76802 -24.66912 -23.76408 -23.40907 -21.30891 -20.68593 -20.17823 -18.86720 -18.45932 -18.20178 -17.48156 -16.92973 -16.80639 -16.39986 -16.06198 -15.52731 -15.47169 -15.16774 -14.83707 -14.71557 -14.56081 -14.27180 -14.03040 -13.86324 -13.74753 -13.59771 -13.39394 -13.14121 -13.12940 -13.02377 -12.96272 -12.83440 -12.76572 -12.73050 -12.30580 -12.24126 -12.13537 -11.81615 -11.68342 -11.64073 -11.48425 -11.44165 -11.38697 -11.06894 -10.56723 -10.46286 -9.80600 -9.24926 -8.16212 -6.25162 -0.30849 1.39984 1.43024 1.49696 2.07442 2.42740 2.65825 2.92919 3.15372 3.45555 3.73474 3.87919 3.96788 4.03717 4.11622 4.18919 4.32174 4.37479 4.47410 4.48679 4.49712 4.55003 4.61542 4.69278 4.72215 4.73674 4.82509 4.87300 4.93846 4.97844 4.98245 5.06382 5.13810 5.19471 5.23037 5.30312 5.33533 5.39448 5.47882 5.48998 5.57247 5.59503 5.76226 5.92458 6.12651 6.16346 6.18988 6.27191 6.81909 7.42294 8.91214 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.003520 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.407044 B = 7953.153442 C = 8913.428417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 N -0.997 5.997 4 C 0.273 3.727 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.015 3.985 8 N -0.923 5.923 9 Si 0.947 3.053 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.265 1.265 13 S 2.794 3.206 14 O -1.011 7.011 15 O -1.009 7.009 16 N -1.115 6.115 17 C 0.122 3.878 18 C -0.077 4.077 19 H 0.082 0.918 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.106 4.106 23 C 0.050 3.950 24 N -0.542 5.542 25 C 0.025 3.975 26 C 0.059 3.941 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.019 0.981 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.421 0.579 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.924 -9.614 9.888 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.001 3.999 3 N -0.838 5.838 4 C 0.149 3.851 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.203 1.203 12 H -0.190 1.190 13 S 2.802 3.198 14 O -0.995 6.995 15 O -0.993 6.993 16 N -0.879 5.879 17 C -0.005 4.005 18 C -0.098 4.098 19 H 0.100 0.900 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.079 4.079 24 N -0.266 5.266 25 C -0.123 4.123 26 C -0.069 4.069 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.416 -8.558 10.473 20.508 hybrid contribution -0.814 -0.291 -1.024 1.340 sum 14.603 -8.849 9.449 19.515 Atomic orbital electron populations 1.22241 0.96849 1.02486 1.01500 1.21239 0.94566 0.80896 1.03163 1.57633 1.79238 1.24019 1.22903 1.18630 0.95604 0.90430 0.80385 1.21828 0.97394 1.32054 1.06689 0.92806 1.25640 0.99845 0.96584 0.96398 1.69984 1.30836 1.41417 1.14060 0.85775 0.80618 0.78914 0.77411 1.20587 1.20317 1.19006 1.01330 0.73359 0.72817 0.72264 1.93564 1.86403 1.33593 1.85896 1.93516 1.71307 1.76147 1.58290 1.55760 1.24190 1.68797 1.39158 1.21448 0.87877 0.98757 0.92391 1.20285 0.92063 0.97352 1.00064 0.89961 1.21380 0.95261 1.00248 0.98107 1.21135 0.94984 0.98156 1.00157 1.21926 0.97335 0.93388 1.01807 1.22001 0.94104 0.97906 0.93862 1.61529 1.02612 1.33450 1.28972 1.22518 1.03381 0.88389 0.98026 1.21040 0.91817 0.96217 0.97784 0.94365 0.89585 0.92976 0.89322 0.89627 0.96335 0.95328 0.92555 0.74199 0.91429 0.91854 0.91554 0.91938 0.92272 0.92186 0.91703 0.91460 0.90913 0.94460 0.95386 0.90388 0.91041 0.90889 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.90 9.83 71.98 0.71 -5.19 16 2 C 0.13 4.17 6.09 86.38 0.53 4.69 16 3 N -1.00 -40.09 2.86 -519.87 -1.48 -41.58 16 4 C 0.27 13.41 5.12 85.63 0.44 13.85 16 5 C -0.54 -30.02 8.41 25.60 0.22 -29.80 16 6 H 0.05 3.01 6.89 -2.91 -0.02 2.99 16 7 C 0.01 0.83 5.46 84.65 0.46 1.29 16 8 N -0.92 -53.36 13.29 21.45 0.28 -53.07 16 9 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 S 2.79 109.56 6.05 -56.49 -0.34 109.22 16 14 O -1.01 -49.50 16.58 -128.00 -2.12 -51.62 16 15 O -1.01 -40.90 17.11 -128.00 -2.19 -43.09 16 16 N -1.12 -31.63 5.89 -187.49 -1.11 -32.74 16 17 C 0.12 3.35 5.56 86.38 0.48 3.83 16 18 C -0.08 -1.66 2.06 -12.47 -0.03 -1.68 16 19 H 0.08 1.83 7.58 -2.39 -0.02 1.81 16 20 C -0.11 -2.27 4.95 30.29 0.15 -2.12 16 21 C -0.11 -1.88 5.42 30.21 0.16 -1.72 16 22 C -0.11 -1.59 6.14 31.39 0.19 -1.39 16 23 C 0.05 0.77 5.18 87.16 0.45 1.22 16 24 N -0.54 -9.19 4.48 -938.16 -4.21 -13.40 16 25 C 0.02 0.33 9.19 127.69 1.17 1.51 16 26 C 0.06 1.11 4.12 83.94 0.35 1.46 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.06 6.59 -2.38 -0.02 2.04 16 30 H 0.09 2.41 7.61 -2.39 -0.02 2.39 16 31 H 0.09 2.56 8.00 -2.39 -0.02 2.54 16 32 H 0.02 0.98 7.61 -2.39 -0.02 0.96 16 33 H 0.03 1.42 8.00 -2.39 -0.02 1.41 16 34 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.42 9.47 7.27 -96.75 -0.70 8.77 16 36 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 37 H 0.06 2.03 7.61 -2.38 -0.02 2.02 16 38 H 0.07 1.31 7.15 -2.39 -0.02 1.29 16 39 H 0.06 1.37 7.93 -2.39 -0.02 1.35 16 40 H 0.06 1.14 7.38 -2.38 -0.02 1.12 16 41 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.94 7.49 -2.39 -0.02 0.92 16 45 H 0.04 0.62 6.50 -2.39 -0.02 0.60 16 46 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 47 H 0.08 0.88 8.01 -2.39 -0.02 0.86 16 48 H 0.07 0.93 8.05 -2.39 -0.02 0.91 16 49 H 0.07 1.29 6.18 -2.39 -0.01 1.28 16 50 H 0.04 0.77 7.23 -2.39 -0.02 0.76 16 Total: -1.00 -69.42 393.04 -3.65 -73.07 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.21 Total: 20.62 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 5.28 Total: -14.06 kcal Atomic # 7 Polarization: -134.28 SS G_CDS: -6.51 Total: -140.79 kcal Atomic # 8 Polarization: -90.40 SS G_CDS: -4.31 Total: -94.71 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 109.56 SS G_CDS: -0.34 Total: 109.22 kcal Total: -69.42 -3.65 -73.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599415791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.207 kcal (2) G-P(sol) polarization free energy of solvation -69.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds