Wall clock time and date at job start Tue Mar 31 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47356 * 239.99977 * 3 2 1 5 5 H 1.48505 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47238 * 119.99763 * 3 2 1 7 7 C 1.37877 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99500 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00219 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47391 * 185.01223 * 9 7 2 11 11 C 1.46961 * 111.00141 * 295.18537 * 10 9 7 12 12 C 1.53049 * 109.36292 * 183.18507 * 11 10 9 13 13 N 1.46948 * 109.36668 * 301.59174 * 12 11 10 14 14 C 1.38394 * 111.00429 * 183.19063 * 13 12 11 15 15 N 1.32497 * 119.17341 * 0.02562 * 14 13 12 16 16 C 1.32488 * 120.93139 * 179.97438 * 15 14 13 17 17 C 1.38128 * 119.29032 * 0.02562 * 16 15 14 18 18 C 1.39645 * 118.49135 * 0.02562 * 17 16 15 19 19 N 1.38525 * 120.48602 * 180.02562 * 18 17 16 20 20 C 1.47009 * 111.00021 * 303.63148 * 19 18 17 21 21 C 1.53100 * 109.25877 * 177.60763 * 20 19 18 22 22 O 1.43012 * 109.25886 * 56.84985 * 21 20 19 23 23 C 1.43023 * 113.73809 * 301.33187 * 22 21 20 24 24 C 1.47015 * 110.99996 * 179.97438 * 19 18 17 25 25 N 1.32437 * 119.18017 * 179.73689 * 14 13 12 26 26 C 1.46963 * 110.87814 * 59.32456 * 13 12 11 27 27 C 1.46959 * 110.99598 * 58.97957 * 10 9 7 28 28 H 0.96991 * 120.00544 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47063 * 65.01764 * 9 7 2 30 30 H 1.08993 * 109.47288 * 305.01699 * 9 7 2 31 31 H 1.08999 * 109.49056 * 63.21609 * 11 10 9 32 32 H 1.09001 * 109.48284 * 303.15232 * 11 10 9 33 33 H 1.09009 * 109.48441 * 181.62802 * 12 11 10 34 34 H 1.08997 * 109.50652 * 61.57563 * 12 11 10 35 35 H 1.07998 * 120.35730 * 180.02562 * 16 15 14 36 36 H 1.07998 * 120.75760 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.51139 * 297.54065 * 20 19 18 38 38 H 1.09006 * 109.51004 * 57.67547 * 20 19 18 39 39 H 1.08996 * 109.51023 * 296.91300 * 21 20 19 40 40 H 1.09000 * 109.54031 * 176.80200 * 21 20 19 41 41 H 1.09004 * 109.50043 * 298.73289 * 23 22 21 42 42 H 1.08996 * 109.54374 * 178.62751 * 23 22 21 43 43 H 1.09007 * 109.50328 * 302.32199 * 24 19 18 44 44 H 1.08996 * 109.50957 * 62.45547 * 24 19 18 45 45 H 1.08999 * 109.48842 * 60.64531 * 26 13 12 46 46 H 1.09002 * 109.49184 * 180.71054 * 26 13 12 47 47 H 1.09003 * 109.48832 * 296.77877 * 27 10 9 48 48 H 1.09000 * 109.49174 * 56.84879 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2012 -3.6131 0.1199 11 6 3.0784 -3.6867 -1.0569 12 6 3.9972 -4.9041 -0.9296 13 7 4.7859 -4.7924 0.3052 14 6 5.6810 -5.8417 0.4187 15 7 5.7212 -6.7622 -0.5335 16 6 6.5649 -7.7812 -0.4604 17 6 7.4117 -7.8808 0.6262 18 6 7.3459 -6.8964 1.6146 19 7 8.1764 -6.9554 2.7216 20 6 8.0152 -8.2313 3.4338 21 6 8.9915 -8.2788 4.6122 22 8 8.7607 -7.1517 5.4617 23 6 8.9098 -5.8923 4.8005 24 6 7.9331 -5.8204 3.6239 25 7 6.4799 -5.8977 1.4735 26 6 3.9087 -4.7188 1.4821 27 6 2.9899 -3.5014 1.3548 28 1 -0.4850 0.8399 -0.0004 29 1 0.6933 -2.5966 -0.9318 30 1 0.5591 -2.5192 0.8413 31 1 3.6815 -2.7808 -1.1182 32 1 2.4716 -3.7815 -1.9574 33 1 4.6685 -4.9442 -1.7875 34 1 3.3954 -5.8122 -0.8959 35 1 6.5901 -8.5260 -1.2421 36 1 8.1085 -8.7017 0.7101 37 1 6.9935 -8.3150 3.8042 38 1 8.2253 -9.0569 2.7537 39 1 10.0150 -8.2492 4.2384 40 1 8.8367 -9.1980 5.1771 41 1 9.9310 -5.7934 4.4322 42 1 8.6959 -5.0851 5.5011 43 1 8.0833 -4.8864 3.0824 44 1 6.9101 -5.8650 3.9972 45 1 3.3056 -5.6247 1.5433 46 1 4.5155 -4.6239 2.3826 47 1 3.5920 -2.5933 1.3209 48 1 2.3186 -3.4612 2.2127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:47 Heat of formation + Delta-G solvation = 54.306036 kcal Electronic energy + Delta-G solvation = -29227.448138 eV Core-core repulsion = 25318.786614 eV Total energy + Delta-G solvation = -3908.661523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53452 -39.95061 -38.57584 -36.56161 -35.12747 -33.20472 -32.43610 -31.74090 -30.78720 -30.43443 -27.85602 -27.64676 -25.37623 -24.63277 -23.95092 -22.71463 -22.59866 -21.56806 -20.91520 -19.28894 -18.24169 -17.70391 -16.64600 -16.46731 -16.25278 -15.83517 -15.70192 -15.34518 -15.17564 -14.97401 -14.79219 -14.60216 -14.27907 -14.10499 -13.85405 -13.75415 -13.20664 -13.03386 -12.78839 -12.03583 -11.99072 -11.93076 -11.83595 -11.35179 -11.12415 -11.07277 -10.97449 -10.88700 -10.77546 -10.61278 -10.56484 -10.28836 -10.16402 -10.02678 -9.88290 -9.59180 -9.27715 -8.95836 -8.43348 -8.22299 -7.23117 -6.03262 -4.12315 0.91798 1.04930 2.85033 3.29755 3.34362 3.36155 3.37611 3.44835 3.69682 4.08951 4.34894 4.41086 4.47686 4.56309 4.67385 4.75512 4.84030 4.90193 4.99671 5.03026 5.11241 5.19840 5.25739 5.27156 5.34343 5.39243 5.50362 5.51966 5.61123 5.71284 5.79104 5.89974 5.96500 6.08332 6.08941 6.25550 6.51206 6.61362 6.68145 6.69534 6.79129 6.86378 6.91402 7.24699 7.35595 7.51042 7.88761 8.00042 8.19000 8.22217 8.27612 8.97607 9.54742 11.01995 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.002764 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.977924 B =10129.141572 C =11246.536244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.188 3.812 10 N -0.544 5.544 11 C 0.059 3.941 12 C 0.076 3.924 13 N -0.457 5.457 14 C 0.527 3.473 15 N -0.569 5.569 16 C 0.188 3.812 17 C -0.284 4.284 18 C 0.377 3.623 19 N -0.473 5.473 20 C 0.023 3.977 21 C 0.064 3.936 22 O -0.383 6.383 23 C 0.060 3.940 24 C 0.028 3.972 25 N -0.566 5.566 26 C 0.074 3.926 27 C 0.064 3.936 28 H 0.263 0.737 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.830 -19.303 5.984 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.076 0.924 9 C 0.063 3.937 10 N -0.269 5.269 11 C -0.070 4.070 12 C -0.051 4.051 13 N -0.176 5.176 14 C 0.170 3.830 15 N -0.291 5.291 16 C 0.023 3.977 17 C -0.311 4.311 18 C 0.134 3.866 19 N -0.191 5.191 20 C -0.103 4.103 21 C -0.013 4.013 22 O -0.302 6.302 23 C -0.017 4.017 24 C -0.099 4.099 25 N -0.290 5.290 26 C -0.052 4.052 27 C -0.065 4.065 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.184 0.816 36 H 0.160 0.840 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.402 -18.340 5.999 25.984 hybrid contribution 0.680 0.598 -0.212 0.930 sum 18.082 -17.742 5.787 25.985 Atomic orbital electron populations 1.69929 1.06019 1.26980 1.50059 1.24952 0.94750 0.99145 0.94851 0.86700 0.79669 0.83227 0.78699 1.20247 1.21232 1.20227 1.21721 0.93388 0.92036 1.51837 0.92372 1.19733 0.90746 0.85345 0.97924 1.62746 1.16895 1.46564 1.00674 1.22056 0.94287 0.95742 0.94927 1.22223 0.94595 0.99132 0.89135 1.58565 1.18356 1.33814 1.06824 1.20987 0.91173 0.86348 0.84461 1.68488 1.25696 1.04114 1.30756 1.22853 0.87173 0.93028 0.94672 1.22061 1.07138 1.03979 0.97947 1.19792 0.85963 0.89013 0.91796 1.59156 1.47150 1.05233 1.07573 1.22979 1.00565 0.90117 0.96643 1.22693 0.97942 0.90120 0.90550 1.88026 1.91464 1.14165 1.36500 1.22811 0.98556 0.86293 0.93994 1.22740 0.99868 0.94008 0.93290 1.67875 1.08263 1.26641 1.26271 1.22362 0.92953 0.99688 0.90150 1.21974 0.94883 0.95156 0.94495 0.92741 0.95297 0.94638 0.93311 0.90484 0.89964 0.92567 0.81566 0.83997 0.92369 0.88481 0.91865 0.87693 0.92115 0.87602 0.88108 0.91740 0.93686 0.89630 0.92768 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.55 -15.05 7.66 -34.44 -0.26 -15.32 16 8 H 0.06 1.59 5.82 -52.48 -0.31 1.29 16 9 C 0.19 4.79 5.14 -4.98 -0.03 4.77 16 10 N -0.54 -11.67 4.92 -235.91 -1.16 -12.83 16 11 C 0.06 1.16 5.32 -3.77 -0.02 1.14 16 12 C 0.08 1.30 4.76 -3.77 -0.02 1.28 16 13 N -0.46 -7.92 4.77 -175.25 -0.84 -8.75 16 14 C 0.53 8.47 7.17 -322.89 -2.31 6.15 16 15 N -0.57 -8.28 8.69 -14.02 -0.12 -8.40 16 16 C 0.19 2.04 11.28 -17.31 -0.20 1.85 16 17 C -0.28 -2.87 9.30 -39.10 -0.36 -3.24 16 18 C 0.38 4.61 6.40 -154.83 -0.99 3.62 16 19 N -0.47 -4.81 4.75 -172.73 -0.82 -5.63 16 20 C 0.02 0.18 5.40 -3.71 -0.02 0.16 16 21 C 0.06 0.42 7.01 37.21 0.26 0.69 16 22 O -0.38 -3.55 10.83 -35.23 -0.38 -3.94 16 23 C 0.06 0.50 7.01 37.21 0.26 0.76 16 24 C 0.03 0.29 4.83 -3.71 -0.02 0.27 16 25 N -0.57 -8.46 8.16 -13.17 -0.11 -8.57 16 26 C 0.07 1.26 5.46 -3.76 -0.02 1.24 16 27 C 0.06 1.26 5.24 -3.76 -0.02 1.24 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 1.06 6.78 -51.93 -0.35 0.71 16 32 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 33 H 0.08 1.34 7.80 -51.92 -0.40 0.94 16 34 H 0.06 0.96 8.03 -51.93 -0.42 0.55 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.14 0.99 7.26 -52.49 -0.38 0.61 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.54 6.90 -51.93 -0.36 0.18 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 1.16 7.87 -51.93 -0.41 0.75 16 44 H 0.06 0.75 8.05 -51.93 -0.42 0.34 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.38 7.65 -51.93 -0.40 0.98 16 47 H 0.05 1.19 6.61 -51.93 -0.34 0.84 16 48 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -31.74 374.22 -13.49 -45.22 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.57 Total: -0.23 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -3.85 Total: 6.36 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -2.31 Total: -69.58 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.38 Total: -3.94 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.74 -13.49 -45.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.531 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds