Wall clock time and date at job start Tue Mar 31 2020 18:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47356 * 239.99977 * 3 2 1 5 5 H 1.48505 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47238 * 119.99763 * 3 2 1 7 7 C 1.37877 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99500 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00219 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47391 * 185.01223 * 9 7 2 11 11 C 1.46961 * 111.00141 * 295.18537 * 10 9 7 12 12 C 1.53049 * 109.36292 * 183.18507 * 11 10 9 13 13 N 1.46948 * 109.36668 * 301.59174 * 12 11 10 14 14 C 1.38394 * 111.00429 * 183.19063 * 13 12 11 15 15 N 1.32497 * 119.17341 * 0.02562 * 14 13 12 16 16 C 1.32488 * 120.93139 * 179.97438 * 15 14 13 17 17 C 1.38128 * 119.29032 * 0.02562 * 16 15 14 18 18 C 1.39645 * 118.49135 * 0.02562 * 17 16 15 19 19 N 1.38525 * 120.48602 * 180.02562 * 18 17 16 20 20 C 1.47009 * 111.00021 * 303.63148 * 19 18 17 21 21 C 1.53100 * 109.25877 * 177.60763 * 20 19 18 22 22 O 1.43012 * 109.25886 * 56.84985 * 21 20 19 23 23 C 1.43023 * 113.73809 * 301.33187 * 22 21 20 24 24 C 1.47015 * 110.99996 * 179.97438 * 19 18 17 25 25 N 1.32437 * 119.18017 * 179.73689 * 14 13 12 26 26 C 1.46963 * 110.87814 * 59.32456 * 13 12 11 27 27 C 1.46959 * 110.99598 * 58.97957 * 10 9 7 28 28 H 0.96991 * 120.00544 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47063 * 65.01764 * 9 7 2 30 30 H 1.08993 * 109.47288 * 305.01699 * 9 7 2 31 31 H 1.08999 * 109.49056 * 63.21609 * 11 10 9 32 32 H 1.09001 * 109.48284 * 303.15232 * 11 10 9 33 33 H 1.09009 * 109.48441 * 181.62802 * 12 11 10 34 34 H 1.08997 * 109.50652 * 61.57563 * 12 11 10 35 35 H 1.07998 * 120.35730 * 180.02562 * 16 15 14 36 36 H 1.07998 * 120.75760 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.51139 * 297.54065 * 20 19 18 38 38 H 1.09006 * 109.51004 * 57.67547 * 20 19 18 39 39 H 1.08996 * 109.51023 * 296.91300 * 21 20 19 40 40 H 1.09000 * 109.54031 * 176.80200 * 21 20 19 41 41 H 1.09004 * 109.50043 * 298.73289 * 23 22 21 42 42 H 1.08996 * 109.54374 * 178.62751 * 23 22 21 43 43 H 1.09007 * 109.50328 * 302.32199 * 24 19 18 44 44 H 1.08996 * 109.50957 * 62.45547 * 24 19 18 45 45 H 1.08999 * 109.48842 * 60.64531 * 26 13 12 46 46 H 1.09002 * 109.49184 * 180.71054 * 26 13 12 47 47 H 1.09003 * 109.48832 * 296.77877 * 27 10 9 48 48 H 1.09000 * 109.49174 * 56.84879 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2012 -3.6131 0.1199 11 6 3.0784 -3.6867 -1.0569 12 6 3.9972 -4.9041 -0.9296 13 7 4.7859 -4.7924 0.3052 14 6 5.6810 -5.8417 0.4187 15 7 5.7212 -6.7622 -0.5335 16 6 6.5649 -7.7812 -0.4604 17 6 7.4117 -7.8808 0.6262 18 6 7.3459 -6.8964 1.6146 19 7 8.1764 -6.9554 2.7216 20 6 8.0152 -8.2313 3.4338 21 6 8.9915 -8.2788 4.6122 22 8 8.7607 -7.1517 5.4617 23 6 8.9098 -5.8923 4.8005 24 6 7.9331 -5.8204 3.6239 25 7 6.4799 -5.8977 1.4735 26 6 3.9087 -4.7188 1.4821 27 6 2.9899 -3.5014 1.3548 28 1 -0.4850 0.8399 -0.0004 29 1 0.6933 -2.5966 -0.9318 30 1 0.5591 -2.5192 0.8413 31 1 3.6815 -2.7808 -1.1182 32 1 2.4716 -3.7815 -1.9574 33 1 4.6685 -4.9442 -1.7875 34 1 3.3954 -5.8122 -0.8959 35 1 6.5901 -8.5260 -1.2421 36 1 8.1085 -8.7017 0.7101 37 1 6.9935 -8.3150 3.8042 38 1 8.2253 -9.0569 2.7537 39 1 10.0150 -8.2492 4.2384 40 1 8.8367 -9.1980 5.1771 41 1 9.9310 -5.7934 4.4322 42 1 8.6959 -5.0851 5.5011 43 1 8.0833 -4.8864 3.0824 44 1 6.9101 -5.8650 3.9972 45 1 3.3056 -5.6247 1.5433 46 1 4.5155 -4.6239 2.3826 47 1 3.5920 -2.5933 1.3209 48 1 2.3186 -3.4612 2.2127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601262519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:46 Heat of formation + Delta-G solvation = 32.467690 kcal Electronic energy + Delta-G solvation = -29228.395119 eV Core-core repulsion = 25318.786614 eV Total energy + Delta-G solvation = -3909.608505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50073 -40.85029 -39.85342 -37.54009 -36.53090 -34.57673 -34.05891 -32.48305 -31.97451 -31.75867 -29.53100 -28.44498 -27.08225 -25.56334 -25.02538 -24.12720 -23.79779 -23.04385 -21.70515 -20.85190 -19.23733 -18.69944 -18.46075 -17.55083 -17.10761 -16.82116 -16.66338 -16.54381 -16.14737 -16.00998 -15.92247 -15.82625 -15.66044 -15.39059 -15.22746 -14.99934 -14.58706 -14.45025 -13.86594 -13.60373 -13.41867 -12.98169 -12.89065 -12.72102 -12.51830 -12.45737 -12.36826 -12.32860 -12.12194 -11.92721 -11.85797 -11.79585 -11.68540 -11.56006 -11.33911 -10.74501 -10.61515 -10.29328 -9.91689 -9.30496 -9.10301 -8.17358 -6.35989 -0.05143 0.15581 1.36355 1.37274 1.45685 1.91893 2.36422 2.38469 2.71253 2.86640 3.08100 3.19705 3.28652 3.51325 3.77691 3.79025 3.90939 4.01625 4.05086 4.07776 4.13646 4.19964 4.23353 4.28565 4.33376 4.44059 4.46946 4.50698 4.61426 4.67669 4.75089 4.77602 4.85993 4.90782 4.93901 5.01486 5.07977 5.18476 5.19074 5.28445 5.31364 5.55598 5.68423 5.73693 5.90296 6.00243 6.09253 6.18750 6.32133 6.41313 6.83107 7.17134 7.35181 8.85596 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.002764 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.977924 B =10129.141572 C =11246.536244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.054 0.946 9 C 0.202 3.798 10 N -0.542 5.542 11 C 0.063 3.937 12 C 0.095 3.905 13 N -0.475 5.475 14 C 0.507 3.493 15 N -0.587 5.587 16 C 0.182 3.818 17 C -0.264 4.264 18 C 0.359 3.641 19 N -0.470 5.470 20 C 0.022 3.978 21 C 0.062 3.938 22 O -0.402 6.402 23 C 0.066 3.934 24 C 0.032 3.968 25 N -0.588 5.588 26 C 0.093 3.907 27 C 0.069 3.931 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.011 0.989 31 H 0.025 0.975 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.208 0.792 36 H 0.181 0.819 37 H 0.044 0.956 38 H 0.124 0.876 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.030 0.970 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.501 -21.393 6.030 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.597 4.597 8 H 0.072 0.928 9 C 0.075 3.925 10 N -0.266 5.266 11 C -0.066 4.066 12 C -0.032 4.032 13 N -0.194 5.194 14 C 0.149 3.851 15 N -0.309 5.309 16 C 0.019 3.981 17 C -0.290 4.290 18 C 0.117 3.883 19 N -0.188 5.188 20 C -0.103 4.103 21 C -0.015 4.015 22 O -0.321 6.321 23 C -0.010 4.010 24 C -0.095 4.095 25 N -0.313 5.313 26 C -0.034 4.034 27 C -0.060 4.060 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.224 0.776 36 H 0.199 0.801 37 H 0.063 0.937 38 H 0.142 0.858 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.048 0.952 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.120 -20.481 6.055 29.342 hybrid contribution -0.058 1.089 -0.205 1.110 sum 20.063 -19.392 5.850 28.509 Atomic orbital electron populations 1.70041 1.07444 1.27984 1.50919 1.25761 0.95584 1.02662 0.94469 0.85661 0.78459 0.79028 0.78868 1.19689 1.20485 1.19662 1.21920 0.93264 0.92992 1.51476 0.92802 1.19396 0.91032 0.86348 0.95695 1.62673 1.17372 1.44416 1.02144 1.22050 0.94101 0.96228 0.94221 1.21960 0.94105 0.97268 0.89833 1.58510 1.18584 1.35997 1.06357 1.20815 0.91541 0.86951 0.85758 1.68458 1.27146 1.04857 1.30463 1.23577 0.86187 0.92531 0.95847 1.22475 1.06483 1.03710 0.96322 1.20263 0.85843 0.89038 0.93106 1.59294 1.46041 1.06182 1.07321 1.23149 1.00218 0.89533 0.97396 1.22923 0.98212 0.90119 0.90225 1.88005 1.91611 1.14896 1.37546 1.22800 0.98320 0.86610 0.93319 1.22636 0.99383 0.93661 0.93827 1.67801 1.09040 1.28123 1.26315 1.22087 0.92502 0.97907 0.90862 1.21920 0.94734 0.95699 0.93597 0.92520 0.97338 0.97064 0.95656 0.90221 0.88991 0.92475 0.77558 0.80148 0.93712 0.85771 0.90697 0.85385 0.91144 0.86779 0.89860 0.93750 0.93551 0.88935 0.95193 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.31 13.29 21.45 0.28 -55.03 16 2 C 0.01 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.56 -31.41 7.66 25.60 0.20 -31.21 16 8 H 0.05 3.04 5.82 -2.91 -0.02 3.02 16 9 C 0.20 10.76 5.14 85.56 0.44 11.20 16 10 N -0.54 -24.09 4.92 -900.28 -4.43 -28.51 16 11 C 0.06 2.54 5.32 86.31 0.46 3.00 16 12 C 0.10 3.26 4.76 86.31 0.41 3.67 16 13 N -0.47 -16.57 4.77 -708.37 -3.38 -19.95 16 14 C 0.51 15.96 7.17 261.52 1.87 17.83 16 15 N -0.59 -16.05 8.69 -198.27 -1.72 -17.78 16 16 C 0.18 3.35 11.28 84.57 0.95 4.30 16 17 C -0.26 -4.36 9.30 22.58 0.21 -4.15 16 18 C 0.36 8.11 6.40 133.19 0.85 8.97 16 19 N -0.47 -8.68 4.75 -700.39 -3.33 -12.01 16 20 C 0.02 0.28 5.40 86.32 0.47 0.74 16 21 C 0.06 0.64 7.01 72.02 0.50 1.14 16 22 O -0.40 -6.74 10.83 -148.98 -1.61 -8.36 16 23 C 0.07 1.03 7.01 72.01 0.50 1.54 16 24 C 0.03 0.66 4.83 86.31 0.42 1.07 16 25 N -0.59 -17.27 8.16 -195.57 -1.60 -18.87 16 26 C 0.09 3.20 5.46 86.31 0.47 3.68 16 27 C 0.07 2.84 5.24 86.31 0.45 3.29 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.01 0.48 8.12 -2.39 -0.02 0.46 16 30 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.03 1.14 6.78 -2.39 -0.02 1.12 16 32 H 0.08 3.12 8.12 -2.39 -0.02 3.10 16 33 H 0.09 2.96 7.80 -2.38 -0.02 2.94 16 34 H 0.06 1.93 8.03 -2.39 -0.02 1.91 16 35 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.18 1.52 7.26 -2.91 -0.02 1.50 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.12 0.83 6.90 -2.38 -0.02 0.82 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.96 7.87 -2.38 -0.02 1.94 16 44 H 0.04 1.06 8.05 -2.39 -0.02 1.04 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 3.05 7.65 -2.39 -0.02 3.03 16 47 H 0.03 1.37 6.61 -2.39 -0.02 1.35 16 48 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -70.63 374.22 -4.13 -74.75 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.95 Total: 12.64 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 8.68 Total: 26.37 kcal Atomic # 7 Polarization: -137.98 SS G_CDS: -14.17 Total: -152.15 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -1.61 Total: -8.36 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.63 -4.13 -74.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.219 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds