Wall clock time and date at job start Tue Mar 31 2020 17:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47311 * 2 1 4 4 C 1.50706 * 109.47149 * 240.00335 * 2 1 3 5 5 H 1.08000 * 119.99913 * 275.00137 * 4 2 1 6 6 C 1.37873 * 120.00098 * 94.99962 * 4 2 1 7 7 N 1.31517 * 120.00019 * 184.91398 * 6 4 2 8 8 Si 1.86803 * 120.00311 * 4.91234 * 6 4 2 9 9 H 1.48504 * 109.46957 * 84.83496 * 8 6 4 10 10 H 1.48490 * 109.47335 * 204.83579 * 8 6 4 11 11 H 1.48500 * 109.46866 * 324.83844 * 8 6 4 12 12 N 1.46488 * 109.47308 * 120.00210 * 2 1 3 13 13 C 1.46498 * 120.00478 * 60.00072 * 12 2 1 14 14 S 1.65599 * 120.00190 * 240.00214 * 12 2 1 15 15 O 1.42105 * 104.27719 * 333.92406 * 14 12 2 16 16 O 1.42107 * 104.28012 * 206.07142 * 14 12 2 17 17 C 1.81399 * 104.45373 * 89.99678 * 14 12 2 18 18 C 1.52994 * 109.47606 * 180.02562 * 17 14 12 19 19 C 1.52993 * 109.47345 * 180.02562 * 18 17 14 20 20 N 1.46904 * 109.47536 * 179.97438 * 19 18 17 21 21 C 1.46961 * 110.99739 * 66.17294 * 20 19 18 22 22 C 1.53050 * 109.36339 * 183.17053 * 21 20 19 23 23 N 1.46953 * 109.37982 * 301.63144 * 22 21 20 24 24 C 1.46908 * 110.99797 * 183.17591 * 23 22 21 25 25 C 1.46958 * 110.88312 * 59.31356 * 23 22 21 26 26 C 1.46948 * 111.00312 * 189.99833 * 20 19 18 27 27 H 1.08997 * 109.47364 * 294.98118 * 1 2 3 28 28 H 1.09007 * 109.47234 * 54.97920 * 1 2 3 29 29 H 1.09001 * 109.47080 * 174.97401 * 1 2 3 30 30 H 0.97004 * 119.99895 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46947 * 270.00684 * 13 12 2 32 32 H 1.09001 * 109.47117 * 29.99856 * 13 12 2 33 33 H 1.08998 * 109.47884 * 150.00167 * 13 12 2 34 34 H 1.09005 * 109.46717 * 60.00139 * 17 14 12 35 35 H 1.08999 * 109.46984 * 300.00793 * 17 14 12 36 36 H 1.08997 * 109.47381 * 59.99580 * 18 17 14 37 37 H 1.09004 * 109.47110 * 299.99882 * 18 17 14 38 38 H 1.08997 * 109.47871 * 59.99675 * 19 18 17 39 39 H 1.09003 * 109.47156 * 299.99603 * 19 18 17 40 40 H 1.09000 * 109.46935 * 63.21529 * 21 20 19 41 41 H 1.08998 * 109.50692 * 303.15142 * 21 20 19 42 42 H 1.09001 * 109.48763 * 181.65912 * 22 21 20 43 43 H 1.09000 * 109.48869 * 61.61589 * 22 21 20 44 44 H 1.09000 * 109.46768 * 60.00374 * 24 23 22 45 45 H 1.09000 * 109.47045 * 180.02562 * 24 23 22 46 46 H 1.08997 * 109.47248 * 300.00281 * 24 23 22 47 47 H 1.08999 * 109.48858 * 60.64086 * 25 23 22 48 48 H 1.08996 * 109.48929 * 180.68377 * 25 23 22 49 49 H 1.09001 * 109.49387 * 56.84426 * 26 20 19 50 50 H 1.09005 * 109.49049 * 296.77606 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3134 1.8792 -2.3175 9 1 3.5990 2.3950 -1.7823 10 1 2.1056 2.3991 -3.6928 11 1 1.1985 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1960 13 6 1.6645 -2.0932 1.4279 14 16 2.9703 0.1141 2.2861 15 8 3.6005 1.1302 1.5181 16 8 3.7316 -0.9107 2.9103 17 6 1.7964 0.8412 3.4625 18 6 2.5631 1.6210 4.5323 19 6 1.5730 2.2337 5.5248 20 7 2.3093 2.9820 6.5524 21 6 2.9850 4.1501 5.9705 22 6 3.8026 4.8557 7.0549 23 7 2.9123 5.2580 8.1527 24 6 3.6487 6.0063 9.1804 25 6 2.2371 4.0896 8.7345 26 6 1.4191 3.3842 7.6502 27 1 -0.3634 0.4340 0.9315 28 1 -0.3634 0.5898 -0.8416 29 1 -0.3633 -1.0237 -0.0900 30 1 2.9363 -0.1047 -4.2557 31 1 0.7375 -2.1444 1.9992 32 1 1.5295 -2.5969 0.4707 33 1 2.4629 -2.5819 1.9863 34 1 1.2176 0.0478 3.9355 35 1 1.1232 1.5161 2.9338 36 1 3.1417 2.4144 4.0591 37 1 3.2365 0.9464 5.0611 38 1 0.9948 1.4402 5.9981 39 1 0.8994 2.9084 4.9964 40 1 2.2405 4.8386 5.5706 41 1 3.6480 3.8251 5.1688 42 1 4.2811 5.7393 6.6324 43 1 4.5652 4.1761 7.4354 44 1 4.0829 6.9021 8.7364 45 1 2.9663 6.2914 9.9811 46 1 4.4433 5.3802 9.5863 47 1 2.9816 3.4010 9.1341 48 1 1.5747 4.4146 9.5368 49 1 0.9405 2.5008 8.0728 50 1 0.6568 4.0642 7.2698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:29 Heat of formation + Delta-G solvation = -55.535373 kcal Electronic energy + Delta-G solvation = -27891.874582 eV Core-core repulsion = 24081.601178 eV Total energy + Delta-G solvation = -3810.273404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.66620 -36.62811 -36.49242 -36.31764 -35.34407 -33.44203 -32.45389 -31.27623 -29.94611 -29.02334 -25.94221 -25.65601 -25.14837 -24.15767 -23.52953 -21.50925 -20.48675 -20.10826 -18.18346 -17.44627 -16.91851 -16.48384 -16.13111 -15.72172 -15.52927 -15.34781 -15.21037 -15.03066 -14.51049 -14.39417 -14.13611 -13.62763 -13.24415 -12.90471 -12.77448 -12.71080 -12.63710 -12.49174 -12.34136 -12.06257 -11.96772 -11.87683 -11.82527 -11.59602 -11.52659 -11.36029 -11.31511 -11.13202 -11.10734 -10.84019 -10.81341 -10.69148 -10.31416 -10.22157 -9.78966 -9.35656 -8.80776 -8.60293 -8.59651 -8.02038 -6.16542 -4.16433 0.73245 3.19960 3.32531 3.37725 3.46080 3.51688 3.57209 4.33789 4.38280 4.44964 4.50483 4.61915 4.68361 4.74901 4.84997 4.87422 5.01086 5.05704 5.14149 5.16401 5.16633 5.22706 5.26591 5.38893 5.44967 5.47184 5.51813 5.55078 5.66403 5.68761 5.69693 5.80834 5.90725 6.03466 6.12872 6.30709 6.38808 6.54832 6.55536 6.57965 6.63516 6.77883 6.78710 6.91246 7.16280 7.48947 7.64739 8.43494 8.87853 9.44842 10.95266 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002736 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.108115 B =10230.833870 C =10818.404249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.058 0.942 4 C -0.513 4.513 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.867 3.133 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.977 5.977 13 C 0.092 3.908 14 S 2.594 3.406 15 O -0.951 6.951 16 O -0.968 6.968 17 C -0.642 4.642 18 C -0.107 4.107 19 C 0.065 3.935 20 N -0.543 5.543 21 C 0.049 3.951 22 C 0.056 3.944 23 N -0.547 5.547 24 C 0.025 3.975 25 C 0.057 3.943 26 C 0.057 3.943 27 H 0.024 0.976 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.267 0.733 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 9.096 23.400 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.128 3.872 3 H 0.076 0.924 4 C -0.553 4.553 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.694 3.306 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.815 5.815 13 C -0.054 4.054 14 S 2.687 3.313 15 O -0.941 6.941 16 O -0.958 6.958 17 C -0.769 4.769 18 C -0.146 4.146 19 C -0.064 4.064 20 N -0.268 5.268 21 C -0.080 4.080 22 C -0.072 4.072 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.072 4.072 26 C -0.072 4.072 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.946 9.171 23.226 25.145 hybrid contribution -0.776 1.073 0.085 1.327 sum -3.722 10.245 23.311 25.734 Atomic orbital electron populations 1.22278 0.98344 1.01398 0.98814 1.19145 0.91023 0.93483 0.83577 0.92429 1.21114 1.44024 0.95929 0.94219 0.89970 1.25000 0.93843 0.98512 0.95302 1.69888 1.44808 1.36097 1.01717 0.87003 0.80185 0.86285 0.77148 1.18830 1.21286 1.18918 1.57664 1.70434 1.19609 1.33841 1.21365 0.98813 0.82247 1.02938 1.05557 0.76157 0.74778 0.74813 1.93586 1.72750 1.60789 1.67022 1.93517 1.67862 1.55891 1.78530 1.30838 1.18405 1.12236 1.15408 1.21271 0.98198 0.99937 0.95216 1.22052 0.94872 0.97335 0.92092 1.62140 1.30828 1.23196 1.10612 1.22286 0.98089 0.90918 0.96659 1.22187 0.94098 0.98940 0.91987 1.62167 1.30911 1.23434 1.10713 1.22344 0.97143 0.98076 0.94726 1.22170 0.97680 0.90966 0.96346 1.22151 0.94138 0.98861 0.92010 0.95722 0.92643 0.92680 0.92321 0.94513 0.89635 0.91316 0.85385 0.85414 0.90531 0.89642 0.90226 0.94152 0.93673 0.89544 0.90117 0.93737 0.91276 0.91396 0.95521 0.93857 0.90312 0.90124 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.10 37.15 0.34 -2.51 16 2 C 0.23 5.23 2.23 -69.09 -0.15 5.07 16 3 H 0.06 1.37 4.02 -51.93 -0.21 1.16 16 4 C -0.51 -13.89 8.72 -34.44 -0.30 -14.19 16 5 H 0.08 2.37 6.82 -52.49 -0.36 2.01 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 7 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 8 Si 0.87 21.57 26.99 -169.99 -4.59 16.98 16 9 H -0.26 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.07 6.82 56.52 0.39 -5.68 16 12 N -0.98 -19.29 2.99 -115.86 -0.35 -19.63 16 13 C 0.09 1.57 9.79 59.85 0.59 2.16 16 14 S 2.59 47.76 5.41 -107.50 -0.58 47.18 16 15 O -0.95 -21.26 16.57 -57.54 -0.95 -22.21 16 16 O -0.97 -19.44 16.57 -57.54 -0.95 -20.39 16 17 C -0.64 -8.15 6.18 37.15 0.23 -7.92 16 18 C -0.11 -1.28 5.15 -26.74 -0.14 -1.41 16 19 C 0.07 0.66 4.96 -3.83 -0.02 0.64 16 20 N -0.54 -5.51 4.71 -234.47 -1.10 -6.62 16 21 C 0.05 0.48 5.41 -3.77 -0.02 0.46 16 22 C 0.06 0.50 5.62 -3.77 -0.02 0.48 16 23 N -0.55 -4.78 4.97 -242.75 -1.21 -5.99 16 24 C 0.03 0.17 9.60 60.07 0.58 0.75 16 25 C 0.06 0.46 5.62 -3.77 -0.02 0.43 16 26 C 0.06 0.49 5.61 -3.77 -0.02 0.47 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.01 7.84 -51.93 -0.41 0.61 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.57 6.56 -51.93 -0.34 1.23 16 33 H 0.07 1.13 6.91 -51.93 -0.36 0.77 16 34 H 0.13 1.33 8.14 -51.92 -0.42 0.91 16 35 H 0.13 1.50 8.14 -51.92 -0.42 1.07 16 36 H 0.08 0.92 6.49 -51.93 -0.34 0.58 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 39 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.87 6.34 -51.93 -0.33 0.54 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 46 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 49 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 50 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -33.59 396.29 -11.14 -44.73 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -9.09 Total: -0.79 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 0.94 Total: -13.46 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -1.88 Total: -58.01 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.91 Total: -42.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.59 Total: 16.98 kcal Atomic # 16 Polarization: 47.76 SS G_CDS: -0.58 Total: 47.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.59 -11.14 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.807 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds